Wall clock time and date at job start Tue Mar 31 2020 14:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46927 * 2 1 4 4 N 1.46495 * 109.47174 * 180.02562 * 3 2 1 5 5 C 1.39681 * 120.00355 * 84.99779 * 4 3 2 6 6 C 1.38916 * 120.07086 * 61.29068 * 5 4 3 7 7 C 1.38103 * 119.92244 * 180.02562 * 6 5 4 8 8 C 1.38294 * 120.07406 * 0.02562 * 7 6 5 9 9 C 1.50691 * 119.92210 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47132 * 90.00114 * 9 8 7 11 11 C 1.38286 * 120.14928 * 0.27646 * 8 7 6 12 12 C 1.38104 * 120.07599 * 359.44692 * 11 8 7 13 13 S 1.65596 * 120.00037 * 265.00088 * 4 3 2 14 14 O 1.42103 * 104.28028 * 31.64178 * 13 4 3 15 15 O 1.42097 * 104.28274 * 159.50223 * 13 4 3 16 16 C 1.81408 * 104.44853 * 275.57345 * 13 4 3 17 17 C 1.53004 * 109.46935 * 179.97438 * 16 13 4 18 18 C 1.50698 * 109.46703 * 180.02562 * 17 16 13 19 19 H 1.08002 * 120.00187 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99925 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00102 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47092 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47145 * 120.00190 * 22 20 18 25 25 H 1.48498 * 109.47055 * 240.00185 * 22 20 18 26 26 H 1.08999 * 109.46851 * 299.99597 * 1 2 3 27 27 H 1.08995 * 109.47071 * 60.00515 * 1 2 3 28 28 H 1.09003 * 109.46639 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46864 * 239.99886 * 2 1 3 30 30 H 1.08996 * 109.47401 * 120.00187 * 2 1 3 31 31 H 1.09001 * 109.47207 * 59.99752 * 3 2 1 32 32 H 1.09001 * 109.47189 * 299.99813 * 3 2 1 33 33 H 1.07994 * 120.03376 * 0.02562 * 6 5 4 34 34 H 1.07996 * 119.96500 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47788 * 329.99997 * 9 8 7 36 36 H 1.09002 * 109.47216 * 210.00052 * 9 8 7 37 37 H 1.09008 * 109.47372 * 179.97438 * 10 9 8 38 38 H 1.09007 * 109.47207 * 60.00043 * 10 9 8 39 39 H 1.09000 * 109.47728 * 299.99837 * 10 9 8 40 40 H 1.07998 * 119.95875 * 179.70589 * 11 8 7 41 41 H 1.07997 * 120.04469 * 180.27774 * 12 11 8 42 42 H 1.08994 * 109.46807 * 299.99828 * 16 13 4 43 43 H 1.08995 * 109.46811 * 59.99794 * 16 13 4 44 44 H 1.08995 * 109.46818 * 299.99501 * 17 16 13 45 45 H 1.08995 * 109.47448 * 60.00296 * 17 16 13 46 46 H 0.96999 * 120.00549 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2030 1.3373 -1.2060 6 6 4.0505 2.3101 -2.1859 7 6 4.7416 2.2027 -3.3766 8 6 5.5844 1.1280 -3.5943 9 6 6.3364 1.0139 -4.8951 10 6 7.6876 1.7201 -4.7667 11 6 5.7336 0.1546 -2.6234 12 6 5.0498 0.2588 -1.4281 13 16 4.3336 1.5674 1.4277 14 8 3.4939 0.9250 2.3773 15 8 5.6258 1.0573 1.1291 16 6 4.4122 3.3507 1.7511 17 6 5.1630 3.5988 3.0609 18 6 5.2277 5.0802 3.3298 19 1 4.7787 5.7752 2.6357 20 6 5.8602 5.5484 4.4620 21 7 6.4066 4.7021 5.3075 22 14 5.9411 7.3846 4.7950 23 1 5.2565 8.1170 3.6995 24 1 5.2705 7.6837 6.0857 25 1 7.3613 7.8131 4.8641 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.3922 3.1493 -2.0166 34 1 4.6233 2.9583 -4.1391 35 1 5.7571 1.4803 -5.6920 36 1 6.4972 -0.0381 -5.1308 37 1 8.2319 1.6372 -5.7075 38 1 8.2671 1.2536 -3.9699 39 1 7.5270 2.7721 -4.5310 40 1 6.3889 -0.6858 -2.7986 41 1 5.1702 -0.4993 -0.6684 42 1 4.9351 3.8455 0.9327 43 1 3.4013 3.7503 1.8308 44 1 4.6396 3.1040 3.8790 45 1 6.1739 3.1991 2.9816 46 1 6.8519 5.0314 6.1038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451095179.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:35 Heat of formation + Delta-G solvation = -90.287134 kcal Electronic energy + Delta-G solvation = -25968.042647 eV Core-core repulsion = 22369.048551 eV Total energy + Delta-G solvation = -3598.994096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.69648 -38.37275 -37.88882 -37.06210 -35.94297 -34.88064 -33.24429 -33.17449 -31.87873 -29.46921 -27.65149 -26.79014 -24.53811 -23.84936 -23.49155 -22.38181 -21.82314 -20.15412 -19.27893 -18.52847 -17.94971 -17.23427 -16.81091 -16.54833 -16.42986 -16.20976 -15.77793 -15.23846 -14.95827 -14.75561 -14.52371 -14.49727 -14.43270 -14.13295 -13.79035 -13.73866 -13.40237 -13.25435 -13.23853 -12.97857 -12.90914 -12.82426 -12.72849 -12.59584 -12.37399 -12.31638 -12.13987 -12.08723 -11.82820 -11.77669 -11.64895 -11.56368 -11.17492 -10.68268 -10.55545 -9.84074 -9.21438 -8.28396 -6.43192 -0.89021 0.35743 0.49927 1.39881 1.40811 1.54132 1.58232 2.36414 2.72828 2.75824 3.04855 3.10329 3.65710 3.93382 3.94737 3.97601 4.01058 4.07478 4.10323 4.21253 4.37556 4.38323 4.51288 4.58311 4.61223 4.65890 4.67630 4.71455 4.80142 4.88271 5.00185 5.08328 5.13812 5.16864 5.20280 5.21101 5.21680 5.28985 5.37270 5.44610 5.46509 5.57925 5.65144 5.73217 5.73867 6.02068 6.17666 6.70186 7.27302 8.84201 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.003926 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.941091 B = 7129.362041 C = 8756.807873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.145 4.145 3 C 0.114 3.886 4 N -0.944 5.944 5 C 0.120 3.880 6 C -0.119 4.119 7 C -0.109 4.109 8 C -0.085 4.085 9 C -0.080 4.080 10 C -0.149 4.149 11 C -0.116 4.116 12 C -0.123 4.123 13 S 2.597 3.403 14 O -0.983 6.983 15 O -0.984 6.984 16 C -0.583 4.583 17 C 0.023 3.977 18 C -0.539 4.539 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.976 3.024 23 H -0.255 1.255 24 H -0.276 1.276 25 H -0.278 1.278 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.137 0.863 41 H 0.107 0.893 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.007 0.993 45 H 0.004 0.996 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.056 -5.853 -22.955 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.184 4.184 3 C -0.009 4.009 4 N -0.774 5.774 5 C 0.027 3.973 6 C -0.140 4.140 7 C -0.128 4.128 8 C -0.086 4.086 9 C -0.117 4.117 10 C -0.207 4.207 11 C -0.135 4.135 12 C -0.144 4.144 13 S 2.698 3.302 14 O -0.974 6.974 15 O -0.974 6.974 16 C -0.716 4.716 17 C -0.016 4.016 18 C -0.578 4.578 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.799 3.201 23 H -0.178 1.178 24 H -0.202 1.202 25 H -0.203 1.203 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.131 0.869 33 H 0.166 0.834 34 H 0.171 0.829 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.155 0.845 41 H 0.125 0.875 42 H 0.156 0.844 43 H 0.163 0.837 44 H 0.025 0.975 45 H 0.022 0.978 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.685 -6.629 -22.243 24.449 hybrid contribution 0.323 0.944 1.031 1.435 sum -7.362 -5.685 -21.211 23.161 Atomic orbital electron populations 1.21674 0.93095 1.02645 1.02790 1.21951 0.97884 0.96734 1.01863 1.21792 0.75718 0.98380 1.05026 1.55233 1.15490 1.87416 1.19301 1.17517 0.97117 0.95704 0.87008 1.21492 1.01081 0.97799 0.93655 1.21241 0.96039 0.98264 0.97233 1.20291 0.97028 0.94374 0.96920 1.20580 0.95688 1.02382 0.93048 1.21774 0.96269 1.00462 1.02162 1.21104 0.99552 1.00250 0.92581 1.21423 0.98312 0.96971 0.97706 1.05377 0.73094 0.78839 0.72922 1.93507 1.68249 1.73915 1.61691 1.93510 1.41737 1.78807 1.83387 1.30339 1.10898 1.22447 1.07870 1.18815 0.94042 0.99122 0.89661 1.21520 1.36724 0.91718 1.07817 0.90519 1.26143 0.94520 1.03884 0.95661 1.70110 1.37394 1.36926 1.12970 0.85236 0.78145 0.78100 0.78611 1.17798 1.20192 1.20327 0.92400 0.90771 0.91956 0.91539 0.93538 0.89476 0.86930 0.83402 0.82866 0.89187 0.90149 0.90834 0.93730 0.92848 0.84536 0.87511 0.84433 0.83726 0.97472 0.97813 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 71.98 0.71 -1.73 16 2 C -0.15 -3.31 6.24 30.60 0.19 -3.12 16 3 C 0.11 2.58 5.17 86.38 0.45 3.03 16 4 N -0.94 -27.31 2.77 -339.41 -0.94 -28.24 16 5 C 0.12 3.30 5.20 38.21 0.20 3.49 16 6 C -0.12 -2.55 9.44 22.40 0.21 -2.34 16 7 C -0.11 -2.00 9.69 22.25 0.22 -1.78 16 8 C -0.09 -1.64 5.14 -19.84 -0.10 -1.75 16 9 C -0.08 -1.06 6.06 29.84 0.18 -0.88 16 10 C -0.15 -2.11 9.89 71.98 0.71 -1.39 16 11 C -0.12 -2.73 9.69 22.25 0.22 -2.51 16 12 C -0.12 -3.59 8.56 22.40 0.19 -3.39 16 13 S 2.60 100.68 5.30 -56.49 -0.30 100.38 16 14 O -0.98 -42.71 16.78 -127.65 -2.14 -44.85 16 15 O -0.98 -43.88 15.50 -127.65 -1.98 -45.86 16 16 C -0.58 -23.23 6.12 71.98 0.44 -22.79 16 17 C 0.02 1.21 4.98 29.85 0.15 1.36 16 18 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 19 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 20 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 21 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 22 Si 0.98 43.43 29.54 68.60 2.03 45.46 16 23 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.32 7.70 -2.39 -0.02 1.30 16 31 H 0.09 1.93 7.77 -2.39 -0.02 1.92 16 32 H 0.11 1.80 7.64 -2.39 -0.02 1.78 16 33 H 0.15 2.46 8.00 -2.91 -0.02 2.43 16 34 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 36 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 37 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 41 H 0.11 3.46 7.45 -2.91 -0.02 3.44 16 42 H 0.14 4.95 8.14 -2.39 -0.02 4.93 16 43 H 0.14 4.92 8.14 -2.39 -0.02 4.90 16 44 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -76.03 391.61 2.34 -73.69 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.93 Total: 20.17 kcal Atomic # 6 Polarization: -68.06 SS G_CDS: 4.46 Total: -63.60 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -0.65 Total: -85.38 kcal Atomic # 8 Polarization: -86.59 SS G_CDS: -4.12 Total: -90.71 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 100.68 SS G_CDS: -0.30 Total: 100.38 kcal Total: -76.03 2.34 -73.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451095179.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.602 kcal (2) G-P(sol) polarization free energy of solvation -76.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds