Wall clock time and date at job start Tue Mar 31 2020 16:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.36787 * 2 1 4 4 C 1.54386 * 110.51267 * 237.58570 * 2 1 3 5 5 H 1.09003 * 110.32051 * 336.21842 * 4 2 1 6 6 C 1.52997 * 110.32110 * 98.31661 * 4 2 1 7 7 C 1.53004 * 109.47240 * 185.00218 * 6 4 2 8 8 F 1.39900 * 109.46834 * 59.99992 * 7 6 4 9 9 F 1.39891 * 109.47668 * 180.02562 * 7 6 4 10 10 F 1.39902 * 109.46875 * 300.00269 * 7 6 4 11 11 C 1.54255 * 105.06105 * 217.31964 * 4 2 1 12 12 C 1.54374 * 105.06031 * 359.97438 * 11 4 2 13 13 H 1.08999 * 110.41183 * 265.07325 * 12 11 4 14 14 C 1.53002 * 110.41037 * 142.63691 * 12 11 4 15 15 N 1.48557 * 104.59783 * 23.85576 * 12 11 4 16 16 C 1.46895 * 111.00218 * 200.95808 * 15 12 11 17 17 C 1.53006 * 109.47032 * 52.10393 * 16 15 12 18 18 C 1.52999 * 109.46920 * 174.23895 * 17 16 15 19 19 S 1.81000 * 109.47180 * 180.02562 * 18 17 16 20 20 C 1.76193 * 100.00247 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00017 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00165 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00443 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00001 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47155 * 89.99376 * 24 22 20 26 26 H 1.48500 * 109.47100 * 209.99655 * 24 22 20 27 27 H 1.48499 * 109.46578 * 329.99382 * 24 22 20 28 28 H 1.09000 * 109.47053 * 299.09309 * 1 2 3 29 29 H 1.09000 * 109.47219 * 59.09879 * 1 2 3 30 30 H 1.09004 * 109.47089 * 179.09859 * 1 2 3 31 31 H 1.08996 * 109.47513 * 304.99830 * 6 4 2 32 32 H 1.09001 * 109.47455 * 65.00515 * 6 4 2 33 33 H 1.08997 * 110.32698 * 118.89900 * 11 4 2 34 34 H 1.09010 * 110.31873 * 241.10195 * 11 4 2 35 35 H 1.09005 * 109.46759 * 299.49379 * 14 12 11 36 36 H 1.09001 * 109.47341 * 59.49564 * 14 12 11 37 37 H 1.09003 * 109.47367 * 179.50020 * 14 12 11 38 38 H 1.09000 * 109.47164 * 292.10549 * 16 15 12 39 39 H 1.08999 * 109.47026 * 172.10571 * 16 15 12 40 40 H 1.08995 * 109.46878 * 294.24195 * 17 16 15 41 41 H 1.09004 * 109.46991 * 54.24571 * 17 16 15 42 42 H 1.08997 * 109.47549 * 300.00641 * 18 17 16 43 43 H 1.09004 * 109.47231 * 60.00332 * 18 17 16 44 44 H 0.96995 * 120.00601 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0710 -0.7751 -1.2207 5 1 1.3276 -1.4888 -1.5757 6 6 2.4516 0.1956 -2.3404 7 6 2.8665 -0.5958 -3.5824 8 9 1.7995 -1.3972 -4.0025 9 9 3.2150 0.2916 -4.6060 10 9 3.9647 -1.4056 -3.2739 11 6 3.3209 -1.5162 -0.7031 12 6 3.4305 -1.1261 0.7865 13 1 4.1073 -0.2806 0.9093 14 6 3.9087 -2.3189 1.6167 15 7 2.0486 -0.7443 1.1761 16 6 2.0551 0.1040 2.3753 17 6 3.0128 1.2785 2.1640 18 6 2.9126 2.2382 3.3513 19 16 4.0449 3.6279 3.1010 20 6 3.7326 4.5459 4.5722 21 1 3.0138 4.1837 5.2923 22 6 4.4111 5.7339 4.8061 23 7 4.1774 6.4200 5.9049 24 14 5.6548 6.3600 3.5609 25 1 4.9707 7.2340 2.5744 26 1 6.7096 7.1356 4.2617 27 1 6.2730 5.2080 2.8567 28 1 -0.3633 0.4997 0.8980 29 1 -0.3634 0.5278 -0.8818 30 1 -0.3633 -1.0276 -0.0162 31 1 1.5959 0.8265 -2.5808 32 1 3.2829 0.8200 -2.0131 33 1 3.1912 -2.5937 -0.8041 34 1 4.2074 -1.1882 -1.2462 35 1 3.1939 -3.1365 1.5233 36 1 4.8838 -2.6456 1.2553 37 1 3.9891 -2.0245 2.6632 38 1 2.3833 -0.4824 3.2335 39 1 1.0496 0.4833 2.5575 40 1 4.0336 0.9050 2.0837 41 1 2.7454 1.8050 1.2477 42 1 1.8917 2.6116 3.4316 43 1 3.1799 1.7118 4.2676 44 1 4.6513 7.2504 6.0682 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451151806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:31 Heat of formation + Delta-G solvation = -174.536364 kcal Electronic energy + Delta-G solvation = -26407.057849 eV Core-core repulsion = 22262.553692 eV Total energy + Delta-G solvation = -4144.504157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.138 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.38785 -47.87931 -47.85545 -40.17349 -35.33853 -33.16978 -32.47565 -32.08363 -29.36498 -28.15346 -25.81353 -24.96542 -24.56894 -22.62122 -22.44282 -20.42617 -19.46456 -18.81369 -18.57228 -17.53558 -17.40355 -16.20768 -15.49921 -15.30327 -15.03522 -15.01356 -14.74295 -14.61333 -14.27631 -14.25510 -14.04773 -13.97063 -13.54692 -13.44625 -13.28333 -12.97356 -12.89359 -12.60690 -12.39331 -12.18112 -12.11441 -11.94389 -11.57813 -11.46306 -11.29425 -11.13977 -11.04039 -10.93440 -10.82969 -10.77381 -10.35192 -10.14484 -9.88079 -9.04457 -8.66561 -8.38312 -6.99477 -6.31901 -4.04789 2.48975 2.97467 3.26165 3.41150 3.46449 3.54500 3.61449 3.76098 3.91234 4.27662 4.33671 4.34467 4.54383 4.74831 4.86401 4.88197 4.98292 5.06499 5.08691 5.12687 5.20369 5.29482 5.34292 5.41510 5.47193 5.48792 5.54620 5.63534 5.68443 5.73689 5.82595 5.94092 6.00446 6.03951 6.05166 6.09521 6.27648 6.35807 6.54716 6.80945 6.97497 7.91890 8.40894 9.13900 10.77644 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.003007 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.088530 B = 9310.342918 C =10138.580073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.059 3.941 3 H 0.067 0.933 4 C -0.091 4.091 5 H 0.093 0.907 6 C -0.163 4.163 7 C 0.453 3.547 8 F -0.184 7.184 9 F -0.187 7.187 10 F -0.181 7.181 11 C -0.125 4.125 12 C 0.047 3.953 13 H 0.068 0.932 14 C -0.135 4.135 15 N -0.498 5.498 16 C 0.046 3.954 17 C -0.140 4.140 18 C -0.078 4.078 19 S -0.220 6.220 20 C -0.502 4.502 21 H 0.088 0.912 22 C 0.092 3.908 23 N -0.881 5.881 24 Si 0.862 3.138 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.239 1.239 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.558 -17.585 -17.562 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.049 4.049 3 H 0.085 0.915 4 C -0.110 4.110 5 H 0.111 0.889 6 C -0.201 4.201 7 C 0.399 3.601 8 F -0.166 7.166 9 F -0.168 7.168 10 F -0.162 7.162 11 C -0.163 4.163 12 C -0.061 4.061 13 H 0.085 0.915 14 C -0.192 4.192 15 N -0.221 5.221 16 C -0.084 4.084 17 C -0.180 4.180 18 C -0.227 4.227 19 S 0.008 5.992 20 C -0.649 4.649 21 H 0.106 0.894 22 C -0.116 4.116 23 N -0.518 5.518 24 Si 0.687 3.313 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.163 1.163 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.134 -17.691 -18.183 25.704 hybrid contribution 0.295 1.019 0.370 1.123 sum -3.839 -16.672 -17.813 24.698 Atomic orbital electron populations 1.21720 0.93497 1.02424 1.01790 1.22682 0.96272 0.96642 0.89347 0.91515 1.21958 0.98879 0.96552 0.93626 0.88914 1.23035 1.06035 0.99238 0.91806 1.20622 0.74890 0.78652 0.85954 1.93178 1.56425 1.75434 1.91559 1.93193 1.92353 1.68327 1.62926 1.93163 1.55445 1.74955 1.92638 1.22699 0.97244 1.01076 0.95248 1.22801 0.90745 0.98314 0.94230 0.91468 1.21679 1.00474 0.97372 0.99721 1.65589 1.17595 1.36264 1.02657 1.22363 0.99975 0.92728 0.93315 1.22036 1.00777 0.96439 0.98703 1.22964 1.01920 0.97969 0.99817 1.84133 1.55650 1.25306 1.34149 1.22108 1.29278 1.09352 1.04193 0.89404 1.24800 0.96212 0.95342 0.95286 1.69933 1.41618 1.15420 1.24853 0.86672 0.81802 0.81017 0.81852 1.19392 1.20062 1.16255 0.92173 0.92387 0.91847 0.86999 0.86992 0.90556 0.90243 0.92003 0.92406 0.92533 0.90268 0.90437 0.91061 0.91408 0.91477 0.91354 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.35 37.16 0.35 -0.83 16 2 C 0.06 0.55 2.29 -66.08 -0.15 0.40 16 3 H 0.07 0.69 5.48 -51.93 -0.28 0.40 16 4 C -0.09 -0.74 2.55 -89.24 -0.23 -0.97 16 5 H 0.09 0.75 7.36 -51.93 -0.38 0.37 16 6 C -0.16 -1.18 4.57 -26.73 -0.12 -1.30 16 7 C 0.45 3.86 3.16 37.16 0.12 3.98 16 8 F -0.18 -1.69 16.71 2.25 0.04 -1.65 16 9 F -0.19 -1.78 17.32 2.25 0.04 -1.74 16 10 F -0.18 -1.68 14.44 2.25 0.03 -1.65 16 11 C -0.12 -1.09 5.20 -25.35 -0.13 -1.23 16 12 C 0.05 0.47 2.67 -66.07 -0.18 0.30 16 13 H 0.07 0.76 5.44 -51.93 -0.28 0.47 16 14 C -0.13 -1.27 9.32 37.16 0.35 -0.93 16 15 N -0.50 -5.26 5.01 -214.38 -1.07 -6.34 16 16 C 0.05 0.55 5.33 -3.82 -0.02 0.53 16 17 C -0.14 -1.99 4.36 -26.73 -0.12 -2.10 16 18 C -0.08 -1.44 5.67 37.16 0.21 -1.23 16 19 S -0.22 -5.24 19.41 -107.50 -2.09 -7.33 16 20 C -0.50 -14.42 10.04 30.94 0.31 -14.11 16 21 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 22 C 0.09 2.67 5.50 -17.43 -0.10 2.57 16 23 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 24 Si 0.86 21.36 27.74 -169.99 -4.72 16.65 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 28 H 0.06 0.56 7.38 -51.93 -0.38 0.18 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 31 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.08 0.66 7.86 -51.93 -0.41 0.25 16 34 H 0.08 0.69 6.01 -51.92 -0.31 0.37 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.57 7.76 -51.93 -0.40 0.16 16 38 H 0.08 0.95 7.75 -51.93 -0.40 0.54 16 39 H 0.08 0.92 7.31 -51.93 -0.38 0.54 16 40 H 0.07 1.03 6.26 -51.93 -0.33 0.71 16 41 H 0.07 0.96 5.96 -51.93 -0.31 0.65 16 42 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 43 H 0.07 1.29 8.14 -51.91 -0.42 0.86 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -30.29 361.57 -8.08 -38.38 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.83 Total: -1.01 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 0.29 Total: -14.92 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: -0.30 Total: -32.17 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.11 Total: -5.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.72 Total: 16.65 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.09 Total: -7.33 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.29 -8.08 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451151806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.161 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds