Wall clock time and date at job start Tue Mar 31 2020 16:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.36787 * 2 1 4 4 C 1.54386 * 110.51267 * 237.58570 * 2 1 3 5 5 H 1.09003 * 110.32051 * 336.21842 * 4 2 1 6 6 C 1.52997 * 110.32110 * 98.31661 * 4 2 1 7 7 C 1.53004 * 109.47240 * 185.00218 * 6 4 2 8 8 F 1.39900 * 109.46834 * 59.99992 * 7 6 4 9 9 F 1.39891 * 109.47668 * 180.02562 * 7 6 4 10 10 F 1.39902 * 109.46875 * 300.00269 * 7 6 4 11 11 C 1.54255 * 105.06105 * 217.31964 * 4 2 1 12 12 C 1.54374 * 105.06031 * 359.97438 * 11 4 2 13 13 H 1.08999 * 110.41183 * 265.07325 * 12 11 4 14 14 C 1.53002 * 110.41037 * 142.63691 * 12 11 4 15 15 N 1.48557 * 104.59783 * 23.85576 * 12 11 4 16 16 C 1.46895 * 111.00218 * 200.95808 * 15 12 11 17 17 C 1.53006 * 109.47032 * 52.10393 * 16 15 12 18 18 C 1.52999 * 109.46920 * 174.23895 * 17 16 15 19 19 S 1.81000 * 109.47180 * 180.02562 * 18 17 16 20 20 C 1.76193 * 100.00247 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00017 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00165 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00443 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00001 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47155 * 89.99376 * 24 22 20 26 26 H 1.48500 * 109.47100 * 209.99655 * 24 22 20 27 27 H 1.48499 * 109.46578 * 329.99382 * 24 22 20 28 28 H 1.09000 * 109.47053 * 299.09309 * 1 2 3 29 29 H 1.09000 * 109.47219 * 59.09879 * 1 2 3 30 30 H 1.09004 * 109.47089 * 179.09859 * 1 2 3 31 31 H 1.08996 * 109.47513 * 304.99830 * 6 4 2 32 32 H 1.09001 * 109.47455 * 65.00515 * 6 4 2 33 33 H 1.08997 * 110.32698 * 118.89900 * 11 4 2 34 34 H 1.09010 * 110.31873 * 241.10195 * 11 4 2 35 35 H 1.09005 * 109.46759 * 299.49379 * 14 12 11 36 36 H 1.09001 * 109.47341 * 59.49564 * 14 12 11 37 37 H 1.09003 * 109.47367 * 179.50020 * 14 12 11 38 38 H 1.09000 * 109.47164 * 292.10549 * 16 15 12 39 39 H 1.08999 * 109.47026 * 172.10571 * 16 15 12 40 40 H 1.08995 * 109.46878 * 294.24195 * 17 16 15 41 41 H 1.09004 * 109.46991 * 54.24571 * 17 16 15 42 42 H 1.08997 * 109.47549 * 300.00641 * 18 17 16 43 43 H 1.09004 * 109.47231 * 60.00332 * 18 17 16 44 44 H 0.96995 * 120.00601 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0710 -0.7751 -1.2207 5 1 1.3276 -1.4888 -1.5757 6 6 2.4516 0.1956 -2.3404 7 6 2.8665 -0.5958 -3.5824 8 9 1.7995 -1.3972 -4.0025 9 9 3.2150 0.2916 -4.6060 10 9 3.9647 -1.4056 -3.2739 11 6 3.3209 -1.5162 -0.7031 12 6 3.4305 -1.1261 0.7865 13 1 4.1073 -0.2806 0.9093 14 6 3.9087 -2.3189 1.6167 15 7 2.0486 -0.7443 1.1761 16 6 2.0551 0.1040 2.3753 17 6 3.0128 1.2785 2.1640 18 6 2.9126 2.2382 3.3513 19 16 4.0449 3.6279 3.1010 20 6 3.7326 4.5459 4.5722 21 1 3.0138 4.1837 5.2923 22 6 4.4111 5.7339 4.8061 23 7 4.1774 6.4200 5.9049 24 14 5.6548 6.3600 3.5609 25 1 4.9707 7.2340 2.5744 26 1 6.7096 7.1356 4.2617 27 1 6.2730 5.2080 2.8567 28 1 -0.3633 0.4997 0.8980 29 1 -0.3634 0.5278 -0.8818 30 1 -0.3633 -1.0276 -0.0162 31 1 1.5959 0.8265 -2.5808 32 1 3.2829 0.8200 -2.0131 33 1 3.1912 -2.5937 -0.8041 34 1 4.2074 -1.1882 -1.2462 35 1 3.1939 -3.1365 1.5233 36 1 4.8838 -2.6456 1.2553 37 1 3.9891 -2.0245 2.6632 38 1 2.3833 -0.4824 3.2335 39 1 1.0496 0.4833 2.5575 40 1 4.0336 0.9050 2.0837 41 1 2.7454 1.8050 1.2477 42 1 1.8917 2.6116 3.4316 43 1 3.1799 1.7118 4.2676 44 1 4.6513 7.2504 6.0682 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451151806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:30 Heat of formation + Delta-G solvation = -191.494908 kcal Electronic energy + Delta-G solvation = -26407.793227 eV Core-core repulsion = 22262.553692 eV Total energy + Delta-G solvation = -4145.239535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.138 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.07278 -48.57802 -48.54261 -40.97364 -36.24851 -34.69952 -34.01571 -32.97067 -30.25645 -28.85534 -27.98494 -26.08714 -25.25842 -23.64836 -23.23175 -21.14638 -20.40545 -19.63118 -19.48778 -19.23914 -18.08789 -17.20444 -17.03996 -16.40601 -16.25512 -15.95282 -15.75990 -15.44173 -15.35256 -14.97300 -14.94911 -14.77691 -14.69993 -14.53581 -14.38170 -14.04875 -13.75831 -13.55240 -13.41551 -13.25283 -13.07686 -13.00155 -12.93625 -12.73002 -12.60931 -12.25233 -12.17227 -12.04824 -11.79771 -11.68114 -11.53955 -11.49822 -11.19722 -11.08363 -10.61443 -9.32368 -9.00610 -8.53264 -6.24635 1.11940 1.30373 1.45846 1.74586 1.84382 2.23090 2.67077 2.79351 2.84880 2.92538 3.13241 3.16752 3.59755 3.64874 3.83521 3.91676 4.07689 4.18465 4.27416 4.29247 4.34707 4.42133 4.45763 4.48614 4.58702 4.71047 4.74972 4.80419 4.84196 4.88496 4.94865 5.06548 5.10498 5.13124 5.22244 5.23873 5.32629 5.39829 5.49974 5.68353 5.99781 6.08916 6.10481 6.90868 8.59992 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.003007 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.088530 B = 9310.342918 C =10138.580073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.057 3.943 3 H 0.061 0.939 4 C -0.085 4.085 5 H 0.097 0.903 6 C -0.158 4.158 7 C 0.453 3.547 8 F -0.188 7.188 9 F -0.193 7.193 10 F -0.186 7.186 11 C -0.122 4.122 12 C 0.044 3.956 13 H 0.057 0.943 14 C -0.132 4.132 15 N -0.498 5.498 16 C 0.056 3.944 17 C -0.125 4.125 18 C -0.065 4.065 19 S -0.222 6.222 20 C -0.522 4.522 21 H 0.049 0.951 22 C 0.038 3.962 23 N -0.923 5.923 24 Si 0.926 3.074 25 H -0.261 1.261 26 H -0.264 1.264 27 H -0.229 1.229 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.284 -18.385 -19.631 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.052 4.052 3 H 0.079 0.921 4 C -0.104 4.104 5 H 0.115 0.885 6 C -0.196 4.196 7 C 0.400 3.600 8 F -0.170 7.170 9 F -0.175 7.175 10 F -0.168 7.168 11 C -0.160 4.160 12 C -0.064 4.064 13 H 0.074 0.926 14 C -0.190 4.190 15 N -0.221 5.221 16 C -0.075 4.075 17 C -0.165 4.165 18 C -0.214 4.214 19 S 0.006 5.994 20 C -0.670 4.670 21 H 0.068 0.932 22 C -0.167 4.167 23 N -0.561 5.561 24 Si 0.747 3.253 25 H -0.185 1.185 26 H -0.188 1.188 27 H -0.152 1.152 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.868 -18.506 -20.254 27.707 hybrid contribution 0.119 1.165 1.047 1.571 sum -3.749 -17.341 -19.206 26.147 Atomic orbital electron populations 1.21713 0.92794 1.02596 1.02100 1.22743 0.96834 0.96270 0.89307 0.92140 1.21896 0.98575 0.96573 0.93336 0.88492 1.23040 1.06891 0.98951 0.90715 1.20789 0.74594 0.78500 0.86157 1.93171 1.56554 1.75597 1.91662 1.93181 1.92416 1.68522 1.63342 1.93152 1.55794 1.75174 1.92646 1.22682 0.97692 1.01355 0.94246 1.22842 0.90132 0.98134 0.95286 0.92551 1.21661 1.01051 0.97155 0.99117 1.65637 1.18000 1.35786 1.02671 1.22234 0.99252 0.91814 0.94176 1.21957 1.01663 0.96157 0.96723 1.23042 1.00150 0.96491 1.01764 1.83797 1.57628 1.26775 1.31194 1.22346 1.28511 1.10396 1.05749 0.93238 1.25792 0.98184 0.95473 0.97262 1.70038 1.43048 1.16179 1.26867 0.85708 0.79413 0.80771 0.79408 1.18541 1.18833 1.15236 0.93079 0.90867 0.91772 0.85346 0.86583 0.90275 0.90009 0.91841 0.91473 0.93400 0.90286 0.90239 0.91016 0.90894 0.91698 0.91799 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.35 71.98 0.67 -1.34 16 2 C 0.06 0.94 2.29 45.07 0.10 1.04 16 3 H 0.06 1.10 5.48 -2.39 -0.01 1.09 16 4 C -0.08 -1.18 2.55 -9.90 -0.03 -1.20 16 5 H 0.10 1.31 7.36 -2.39 -0.02 1.29 16 6 C -0.16 -1.89 4.57 30.59 0.14 -1.75 16 7 C 0.45 6.83 3.16 71.98 0.23 7.06 16 8 F -0.19 -3.09 16.71 44.97 0.75 -2.34 16 9 F -0.19 -3.36 17.32 44.97 0.78 -2.58 16 10 F -0.19 -3.14 14.44 44.97 0.65 -2.49 16 11 C -0.12 -1.88 5.20 31.49 0.16 -1.71 16 12 C 0.04 0.81 2.67 45.06 0.12 0.93 16 13 H 0.06 1.17 5.44 -2.39 -0.01 1.16 16 14 C -0.13 -2.28 9.32 71.98 0.67 -1.61 16 15 N -0.50 -9.60 5.01 -832.16 -4.17 -13.77 16 16 C 0.06 1.24 5.33 86.31 0.46 1.70 16 17 C -0.13 -3.37 4.36 30.60 0.13 -3.24 16 18 C -0.07 -2.39 5.67 71.98 0.41 -1.99 16 19 S -0.22 -10.42 19.41 -56.49 -1.10 -11.52 16 20 C -0.52 -30.63 10.04 67.95 0.68 -29.94 16 21 H 0.05 3.17 8.03 -2.91 -0.02 3.14 16 22 C 0.04 2.19 5.50 84.86 0.47 2.66 16 23 N -0.92 -56.76 13.97 21.65 0.30 -56.45 16 24 Si 0.93 43.73 27.74 68.60 1.90 45.64 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 26 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 27 H -0.23 -10.38 6.74 99.48 0.67 -9.71 16 28 H 0.05 0.86 7.38 -2.39 -0.02 0.84 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.96 8.12 -2.38 -0.02 0.94 16 31 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.12 1.34 8.13 -2.39 -0.02 1.32 16 33 H 0.08 1.19 7.86 -2.39 -0.02 1.17 16 34 H 0.08 1.24 6.01 -2.38 -0.01 1.23 16 35 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 0.90 7.76 -2.39 -0.02 0.88 16 38 H 0.08 1.78 7.75 -2.39 -0.02 1.76 16 39 H 0.08 1.76 7.31 -2.39 -0.02 1.74 16 40 H 0.07 1.96 6.26 -2.39 -0.01 1.95 16 41 H 0.07 1.92 5.96 -2.38 -0.01 1.91 16 42 H 0.06 2.41 8.14 -2.40 -0.02 2.39 16 43 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -65.16 361.57 4.30 -60.86 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.96 Total: 12.05 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 4.22 Total: -29.40 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -3.87 Total: -70.22 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 2.18 Total: -7.41 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.90 Total: 45.64 kcal Atomic # 16 Polarization: -10.42 SS G_CDS: -1.10 Total: -11.52 kcal Total: -65.16 4.30 -60.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451151806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.630 kcal (2) G-P(sol) polarization free energy of solvation -65.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds