Wall clock time and date at job start Tue Mar 31 2020 16:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.05993 * 2 1 4 4 C 1.53982 * 109.92140 * 238.79182 * 2 1 3 5 5 H 1.09003 * 110.39374 * 120.46099 * 4 2 1 6 6 C 1.53002 * 110.30851 * 358.33601 * 4 2 1 7 7 C 1.53001 * 109.47101 * 177.82855 * 6 4 2 8 8 F 1.39904 * 109.47153 * 60.00107 * 7 6 4 9 9 F 1.39901 * 109.47414 * 179.97438 * 7 6 4 10 10 F 1.39903 * 109.47281 * 300.00451 * 7 6 4 11 11 C 1.54595 * 105.14149 * 239.42297 * 4 2 1 12 12 C 1.54936 * 103.08155 * 337.95046 * 11 4 2 13 13 H 1.09006 * 110.66970 * 279.07291 * 12 11 4 14 14 C 1.52995 * 110.66905 * 155.93931 * 12 11 4 15 15 N 1.47899 * 109.91565 * 121.19751 * 2 1 3 16 16 C 1.46901 * 111.00468 * 265.20066 * 15 2 1 17 17 C 1.53003 * 109.47046 * 294.47519 * 16 15 2 18 18 C 1.53001 * 109.47205 * 174.70888 * 17 16 15 19 19 S 1.80994 * 109.47293 * 179.97438 * 18 17 16 20 20 C 1.76194 * 100.00216 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99904 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00145 * 179.97438 * 20 19 18 23 23 N 1.31639 * 120.00164 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00089 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47280 * 89.99707 * 24 22 20 26 26 H 1.48504 * 109.47310 * 209.99866 * 24 22 20 27 27 H 1.48501 * 109.47229 * 329.99750 * 24 22 20 28 28 H 1.08998 * 109.46584 * 181.20730 * 1 2 3 29 29 H 1.09002 * 109.47230 * 301.20943 * 1 2 3 30 30 H 1.08999 * 109.46914 * 61.21402 * 1 2 3 31 31 H 1.08997 * 109.47471 * 297.82900 * 6 4 2 32 32 H 1.09003 * 109.46871 * 57.83405 * 6 4 2 33 33 H 1.08994 * 110.72881 * 96.40035 * 11 4 2 34 34 H 1.09008 * 110.72612 * 219.50696 * 11 4 2 35 35 H 1.09000 * 109.47200 * 65.87847 * 14 12 11 36 36 H 1.09004 * 109.47343 * 185.88043 * 14 12 11 37 37 H 1.08999 * 109.47049 * 305.87700 * 14 12 11 38 38 H 1.09003 * 109.47043 * 54.46760 * 16 15 2 39 39 H 1.08994 * 109.47378 * 174.46570 * 16 15 2 40 40 H 1.09007 * 109.46644 * 294.70210 * 17 16 15 41 41 H 1.08992 * 109.47286 * 54.70429 * 17 16 15 42 42 H 1.09002 * 109.46879 * 299.99962 * 18 17 16 43 43 H 1.09006 * 109.47133 * 59.99526 * 18 17 16 44 44 H 0.96997 * 120.00023 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0547 -0.7501 -1.2382 5 1 2.6711 -0.0905 -1.8490 6 6 0.8872 -1.2977 -2.0616 7 6 1.4273 -1.9916 -3.3137 8 9 2.2671 -3.0453 -2.9373 9 9 0.3598 -2.4928 -4.0663 10 9 2.1490 -1.0718 -4.0820 11 6 2.9060 -1.9117 -0.6760 12 6 3.2723 -1.4210 0.7473 13 1 4.1139 -0.7292 0.7110 14 6 3.5846 -2.6060 1.6633 15 7 2.0338 -0.7203 1.1895 16 6 2.3211 0.2125 2.2874 17 6 3.4777 1.1307 1.8871 18 6 3.6905 2.1863 2.9740 19 16 5.0592 3.2720 2.5008 20 6 5.0822 4.3578 3.8882 21 1 4.3729 4.2227 4.6914 22 6 6.0118 5.3867 3.9490 23 7 6.0286 6.1982 4.9853 24 14 7.2381 5.6207 2.5595 25 1 6.6627 6.5346 1.5401 26 1 8.4914 6.2070 3.0988 27 1 7.5351 4.3067 1.9348 28 1 -0.3632 -1.0274 0.0217 29 1 -0.3634 0.5325 0.8789 30 1 -0.3633 0.4949 -0.9007 31 1 0.3249 -2.0143 -1.4630 32 1 0.2329 -0.4767 -2.3549 33 1 2.3216 -2.8305 -0.6287 34 1 3.8039 -2.0578 -1.2766 35 1 4.4882 -3.1062 1.3150 36 1 3.7370 -2.2479 2.6815 37 1 2.7510 -3.3080 1.6461 38 1 1.4355 0.8132 2.4949 39 1 2.5957 -0.3501 3.1796 40 1 4.3867 0.5404 1.7710 41 1 3.2411 1.6229 0.9438 42 1 2.7815 2.7765 3.0902 43 1 3.9271 1.6940 3.9173 44 1 6.6785 6.9170 5.0279 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451151813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:35 Heat of formation + Delta-G solvation = -188.316636 kcal Electronic energy + Delta-G solvation = -26360.691983 eV Core-core repulsion = 22215.590268 eV Total energy + Delta-G solvation = -4145.101715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.138 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.02972 -48.53480 -48.50647 -41.00848 -36.41488 -34.70675 -34.15154 -32.69533 -29.97699 -29.15496 -27.99088 -26.05835 -25.02032 -24.04315 -23.22437 -21.08775 -20.10416 -19.63193 -19.47284 -19.12013 -18.30794 -17.30905 -17.10193 -16.43971 -16.10334 -15.91940 -15.65395 -15.51325 -15.08970 -14.98623 -14.95807 -14.82968 -14.67305 -14.61158 -14.44010 -14.20060 -13.87138 -13.52158 -13.40274 -13.30530 -13.03360 -12.94464 -12.82791 -12.64258 -12.44373 -12.25000 -12.16636 -12.00849 -11.78074 -11.69569 -11.60881 -11.45706 -11.21327 -11.12518 -10.61974 -9.28824 -9.02007 -8.54112 -6.25581 1.10892 1.29478 1.45111 1.73528 1.89543 2.22332 2.66345 2.83946 2.88995 2.96227 3.06018 3.17135 3.57366 3.64205 3.87025 3.89495 4.07794 4.20887 4.27837 4.28615 4.32751 4.42754 4.46474 4.57794 4.65691 4.70617 4.73268 4.75645 4.81867 4.88018 4.96241 5.08311 5.09835 5.14183 5.19234 5.23349 5.31665 5.42232 5.50857 5.67735 6.02819 6.08115 6.11253 6.90091 8.59107 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.002702 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.257229 B =10360.493217 C =10821.999138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.060 3.940 3 H 0.054 0.946 4 C -0.096 4.096 5 H 0.083 0.917 6 C -0.149 4.149 7 C 0.447 3.553 8 F -0.188 7.188 9 F -0.192 7.192 10 F -0.194 7.194 11 C -0.112 4.112 12 C 0.046 3.954 13 H 0.054 0.946 14 C -0.130 4.130 15 N -0.500 5.500 16 C 0.058 3.942 17 C -0.125 4.125 18 C -0.064 4.064 19 S -0.226 6.226 20 C -0.521 4.521 21 H 0.050 0.950 22 C 0.037 3.963 23 N -0.923 5.923 24 Si 0.926 3.074 25 H -0.261 1.261 26 H -0.263 1.263 27 H -0.230 1.230 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.988 -20.415 -16.573 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.048 4.048 3 H 0.072 0.928 4 C -0.115 4.115 5 H 0.101 0.899 6 C -0.187 4.187 7 C 0.394 3.606 8 F -0.169 7.169 9 F -0.173 7.173 10 F -0.176 7.176 11 C -0.150 4.150 12 C -0.062 4.062 13 H 0.072 0.928 14 C -0.188 4.188 15 N -0.224 5.224 16 C -0.072 4.072 17 C -0.165 4.165 18 C -0.213 4.213 19 S 0.002 5.998 20 C -0.668 4.668 21 H 0.069 0.931 22 C -0.167 4.167 23 N -0.561 5.561 24 Si 0.747 3.253 25 H -0.186 1.186 26 H -0.187 1.187 27 H -0.154 1.154 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.639 -20.661 -17.220 29.306 hybrid contribution 0.645 1.360 0.812 1.710 sum -10.995 -19.301 -16.407 27.615 Atomic orbital electron populations 1.21907 0.92561 1.02998 1.02153 1.22439 0.97383 0.96251 0.88748 0.92794 1.21988 0.95727 0.97753 0.96065 0.89894 1.23181 1.00120 1.03725 0.91641 1.21030 0.75549 0.77294 0.86771 1.93176 1.72994 1.59700 1.91075 1.93175 1.56474 1.88459 1.79225 1.93170 1.79362 1.66594 1.78486 1.22765 0.99907 0.98002 0.94368 1.23037 0.91901 0.96121 0.95158 0.92841 1.21605 1.01760 0.96820 0.98613 1.65146 1.26156 1.24817 1.06236 1.22235 0.96493 0.93206 0.95293 1.21957 1.00856 0.96153 0.97492 1.23040 0.98283 0.98266 1.01757 1.83855 1.46209 1.37270 1.32474 1.22327 1.21857 1.16752 1.05905 0.93146 1.25786 0.98551 0.93926 0.98463 1.70040 1.37105 1.17866 1.31056 0.85711 0.78915 0.81367 0.79323 1.18601 1.18724 1.15366 0.90804 0.93182 0.90541 0.85225 0.85135 0.89433 0.90865 0.91617 0.93289 0.91540 0.90292 0.90136 0.91142 0.91342 0.91674 0.91659 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.36 71.98 0.60 -1.17 16 2 C 0.06 1.00 2.85 45.06 0.13 1.12 16 3 H 0.05 1.08 5.82 -2.38 -0.01 1.06 16 4 C -0.10 -1.38 2.94 -9.92 -0.03 -1.40 16 5 H 0.08 1.31 7.73 -2.39 -0.02 1.29 16 6 C -0.15 -1.54 3.55 30.60 0.11 -1.43 16 7 C 0.45 6.44 3.16 71.98 0.23 6.67 16 8 F -0.19 -3.06 14.65 44.97 0.66 -2.40 16 9 F -0.19 -3.01 17.32 44.97 0.78 -2.23 16 10 F -0.19 -3.42 16.75 44.97 0.75 -2.67 16 11 C -0.11 -1.74 4.37 31.80 0.14 -1.60 16 12 C 0.05 0.84 2.69 45.17 0.12 0.96 16 13 H 0.05 1.17 5.49 -2.38 -0.01 1.16 16 14 C -0.13 -2.21 9.52 71.98 0.69 -1.53 16 15 N -0.50 -9.45 4.88 -832.28 -4.06 -13.51 16 16 C 0.06 1.30 5.32 86.30 0.46 1.76 16 17 C -0.12 -3.47 4.36 30.60 0.13 -3.34 16 18 C -0.06 -2.40 5.67 71.98 0.41 -1.99 16 19 S -0.23 -10.81 19.41 -56.49 -1.10 -11.91 16 20 C -0.52 -30.76 10.04 67.95 0.68 -30.08 16 21 H 0.05 3.24 8.03 -2.91 -0.02 3.22 16 22 C 0.04 2.20 5.50 84.86 0.47 2.67 16 23 N -0.92 -56.96 13.97 21.65 0.30 -56.65 16 24 Si 0.93 44.22 27.74 68.60 1.90 46.12 16 25 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.23 -10.61 6.74 99.48 0.67 -9.93 16 28 H 0.07 0.81 6.78 -2.39 -0.02 0.80 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.71 6.74 -2.39 -0.02 0.70 16 31 H 0.13 1.02 6.85 -2.39 -0.02 1.01 16 32 H 0.13 0.93 6.59 -2.39 -0.02 0.91 16 33 H 0.09 1.25 7.06 -2.39 -0.02 1.23 16 34 H 0.07 1.16 7.95 -2.38 -0.02 1.14 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 0.91 7.64 -2.39 -0.02 0.89 16 37 H 0.07 1.05 8.11 -2.39 -0.02 1.03 16 38 H 0.08 1.74 8.13 -2.39 -0.02 1.72 16 39 H 0.08 1.80 7.66 -2.39 -0.02 1.78 16 40 H 0.07 2.00 6.25 -2.38 -0.01 1.99 16 41 H 0.07 1.92 6.14 -2.39 -0.01 1.90 16 42 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -66.06 357.83 4.34 -61.72 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.96 Total: 10.88 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 4.13 Total: -29.34 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -3.76 Total: -70.17 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 2.19 Total: -7.30 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.90 Total: 46.12 kcal Atomic # 16 Polarization: -10.81 SS G_CDS: -1.10 Total: -11.91 kcal Total: -66.06 4.34 -61.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451151813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.593 kcal (2) G-P(sol) polarization free energy of solvation -66.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds