Wall clock time and date at job start Tue Mar 31 2020 14:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47000 * 241.80089 * 3 2 1 5 5 C 1.46503 * 119.99947 * 274.99888 * 4 3 2 6 6 C 1.52996 * 109.46806 * 60.00172 * 5 4 3 7 7 C 1.53005 * 109.47004 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46829 * 60.00122 * 7 6 5 9 9 C 1.52996 * 109.47228 * 299.99741 * 8 7 6 10 10 C 1.52996 * 109.47135 * 300.00228 * 5 4 3 11 11 S 1.65606 * 120.00058 * 95.00461 * 4 3 2 12 12 O 1.42100 * 104.27702 * 153.92610 * 11 4 3 13 13 O 1.42098 * 104.27694 * 26.06994 * 11 4 3 14 14 C 1.81401 * 104.44489 * 269.99889 * 11 4 3 15 15 C 1.53002 * 109.46726 * 185.15273 * 14 11 4 16 16 C 1.50691 * 115.55353 * 294.83966 * 15 14 11 17 17 H 1.07997 * 120.00373 * 95.18485 * 16 15 14 18 18 C 1.37875 * 120.00158 * 274.91260 * 16 15 14 19 19 N 1.31514 * 120.00009 * 6.58356 * 18 16 15 20 20 Si 1.86799 * 120.00325 * 186.58091 * 18 16 15 21 21 H 1.48501 * 109.47090 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47115 * 119.99996 * 20 18 16 23 23 H 1.48498 * 109.47465 * 239.99898 * 20 18 16 24 24 C 1.53008 * 117.49831 * 80.51247 * 15 14 11 25 25 C 1.53002 * 117.49589 * 149.17052 * 15 14 11 26 26 H 4.40632 * 5.51399 * 179.97438 * 4 1 2 27 27 H 1.09006 * 109.47106 * 121.79971 * 3 2 1 28 28 H 1.09005 * 109.47353 * 1.80292 * 3 2 1 29 29 H 1.09003 * 109.46789 * 180.02562 * 5 4 3 30 30 H 1.08991 * 109.47457 * 300.00017 * 6 5 4 31 31 H 1.09006 * 109.47059 * 60.00071 * 6 5 4 32 32 H 1.09003 * 109.46897 * 300.00230 * 7 6 5 33 33 H 1.09004 * 109.46894 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.47087 * 180.02562 * 8 7 6 35 35 H 1.08994 * 109.47399 * 60.00433 * 8 7 6 36 36 H 1.09003 * 109.47482 * 300.00494 * 9 8 7 37 37 H 1.08998 * 109.47300 * 179.97438 * 9 8 7 38 38 H 1.09004 * 109.47472 * 299.99701 * 10 5 4 39 39 H 1.08994 * 109.47399 * 60.00378 * 10 5 4 40 40 H 1.08994 * 109.47181 * 65.15542 * 14 11 4 41 41 H 1.09003 * 109.47267 * 305.15007 * 14 11 4 42 42 H 0.97004 * 120.00186 * 185.04263 * 19 18 16 43 43 H 1.08995 * 117.49885 * 214.99893 * 24 15 14 44 44 H 1.08994 * 117.49717 * 0.02562 * 24 15 14 45 45 H 1.09000 * 117.50103 * 359.97339 * 25 15 14 46 46 H 1.08998 * 117.49837 * 144.97773 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6535 1.2173 5 6 3.2732 2.1113 1.2611 6 6 1.9105 2.7614 1.0139 7 6 2.0558 4.2838 1.0604 8 6 3.0399 4.7353 -0.0206 9 6 4.4026 4.0852 0.2266 10 6 4.2572 2.5624 0.1798 11 16 3.5283 -0.2562 2.5437 12 8 4.4860 0.5320 3.2371 13 8 3.8745 -1.5258 2.0075 14 6 1.9861 -0.3649 3.4926 15 6 2.2526 -1.0806 4.8184 16 6 2.6637 -2.5260 4.7057 17 1 3.7105 -2.7915 4.7088 18 6 1.7033 -3.5100 4.6043 19 7 0.4364 -3.1815 4.4755 20 14 2.2016 -5.3097 4.6498 21 1 3.6755 -5.4117 4.7999 22 1 1.5391 -5.9779 5.7988 23 1 1.7863 -5.9705 3.3864 24 6 2.8648 -0.2585 5.9544 25 6 1.3952 -0.6817 6.0212 26 1 -1.0501 0.0001 -0.0003 27 1 3.0091 0.5424 -0.8735 28 1 3.0098 -1.0264 -0.0323 29 1 3.6471 2.4112 2.2401 30 1 1.5370 2.4614 0.0349 31 1 1.2095 2.4400 1.7843 32 1 2.4291 4.5834 2.0397 33 1 1.0848 4.7469 0.8847 34 1 3.1438 5.8199 0.0127 35 1 2.6666 4.4357 -0.9998 36 1 4.7759 4.3849 1.2059 37 1 5.1036 4.4066 -0.5437 38 1 5.2281 2.0992 0.3559 39 1 3.8838 2.2624 -0.7992 40 1 1.2460 -0.9241 2.9202 41 1 1.6099 0.6387 3.6907 42 1 -0.2461 -3.8709 4.4776 43 1 3.5648 -0.7631 6.6202 44 1 3.0773 0.7922 5.7573 45 1 0.6416 0.0908 5.8681 46 1 1.1282 -1.4648 6.7308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491791901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:56 Heat of formation + Delta-G solvation = -8.133432 kcal Electronic energy + Delta-G solvation = -27352.623768 eV Core-core repulsion = 23757.192123 eV Total energy + Delta-G solvation = -3595.431644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -39.10434 -36.75580 -36.38947 -35.57998 -35.06573 -32.50640 -32.02638 -30.80393 -29.42355 -28.14853 -26.35218 -25.41996 -22.65263 -22.14137 -21.20630 -19.81624 -19.58903 -18.61395 -17.81860 -17.17315 -16.50946 -16.17079 -15.16063 -15.00190 -14.69142 -14.34399 -14.26761 -14.20904 -14.09373 -13.74335 -13.22828 -13.06707 -12.87788 -12.64558 -12.24431 -11.92361 -11.82903 -11.52407 -11.42066 -11.29724 -11.24993 -11.07880 -11.05104 -10.92326 -10.68374 -10.57921 -10.47847 -10.41040 -10.35122 -10.12130 -10.06440 -9.87384 -9.67443 -8.97896 -8.91494 -8.53854 -8.07295 -6.13272 -4.23643 1.01315 2.78076 3.04202 3.29226 3.37773 3.44771 3.51478 4.39083 4.47988 4.59394 4.61581 4.70991 4.76316 4.90965 5.02442 5.14852 5.18663 5.19952 5.29389 5.39888 5.42550 5.44937 5.56982 5.57716 5.68391 5.77086 5.88598 5.95190 5.96248 6.02018 6.08884 6.10645 6.13086 6.22597 6.27014 6.31355 6.38604 6.49597 6.63433 6.72024 6.84009 7.00222 7.26145 7.39608 7.79702 7.81243 8.21082 8.82521 9.48105 10.95075 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017528 B = 0.004561 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.089289 B = 6136.954094 C = 6422.237729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.204 4.204 3 C 0.222 3.778 4 N -1.000 6.000 5 C 0.148 3.852 6 C -0.131 4.131 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.118 4.118 10 C -0.126 4.126 11 S 2.601 3.399 12 O -0.969 6.969 13 O -0.947 6.947 14 C -0.549 4.549 15 C 0.042 3.958 16 C -0.513 4.513 17 H 0.068 0.932 18 C 0.082 3.918 19 N -0.873 5.873 20 Si 0.890 3.110 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.209 4.209 25 C -0.140 4.140 26 H 0.215 0.785 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.262 0.738 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 13.899 -9.944 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.206 4.206 3 C 0.097 3.903 4 N -0.832 5.832 5 C 0.042 3.958 6 C -0.170 4.170 7 C -0.157 4.157 8 C -0.157 4.157 9 C -0.156 4.156 10 C -0.165 4.165 11 S 2.701 3.299 12 O -0.959 6.959 13 O -0.937 6.937 14 C -0.682 4.682 15 C 0.040 3.960 16 C -0.550 4.550 17 H 0.086 0.914 18 C -0.123 4.123 19 N -0.508 5.508 20 Si 0.717 3.283 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.206 1.206 24 C -0.246 4.246 25 C -0.179 4.179 26 H 0.231 0.769 27 H 0.117 0.883 28 H 0.135 0.865 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.152 0.848 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.668 13.445 -9.894 16.776 hybrid contribution -1.065 -0.821 0.111 1.350 sum 0.602 12.624 -9.783 15.982 Atomic orbital electron populations 1.24889 0.95860 1.01057 0.98860 1.23710 0.95065 1.00237 1.01600 1.18160 0.83389 1.00165 0.88574 1.58109 1.81406 1.15763 1.27949 1.20900 0.95331 0.78635 1.00945 1.21985 0.97107 0.94868 1.03014 1.21533 0.99300 0.95476 0.99393 1.21553 0.95418 0.99710 0.99033 1.21527 0.97076 0.94835 1.02168 1.21873 0.99750 0.95764 0.99134 1.05402 0.77817 0.73171 0.73527 1.93485 1.58231 1.70423 1.73795 1.93518 1.82491 1.40864 1.76863 1.30001 1.19654 1.06459 1.12091 1.18313 1.00846 0.93478 0.83388 1.20567 0.93507 0.88294 1.52621 0.91376 1.24931 0.94857 0.99234 0.93307 1.70025 0.99837 1.33554 1.47407 0.86558 0.79384 0.84709 0.77695 1.19186 1.20844 1.20642 1.23202 0.97267 0.98701 1.05445 1.22531 0.91068 1.01221 1.03066 0.76856 0.88310 0.86460 0.88118 0.91083 0.91530 0.91726 0.91890 0.92145 0.92076 0.91557 0.91831 0.91179 0.91542 0.84824 0.88608 0.92866 0.89507 0.90748 0.91610 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 19.25 29.55 0.57 -1.98 16 2 C -0.20 -2.98 11.55 -37.12 -0.43 -3.41 16 3 C 0.22 3.14 5.73 -6.83 -0.04 3.11 16 4 N -1.00 -15.73 2.64 -110.39 -0.29 -16.02 16 5 C 0.15 1.97 2.46 -67.93 -0.17 1.80 16 6 C -0.13 -1.52 4.52 -26.73 -0.12 -1.64 16 7 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 8 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 9 C -0.12 -1.09 5.92 -26.71 -0.16 -1.25 16 10 C -0.13 -1.41 5.17 -26.71 -0.14 -1.54 16 11 S 2.60 53.86 5.16 -107.50 -0.55 53.30 16 12 O -0.97 -21.25 16.57 -57.54 -0.95 -22.20 16 13 O -0.95 -22.64 16.14 -57.54 -0.93 -23.57 16 14 C -0.55 -11.91 6.03 37.16 0.22 -11.69 16 15 C 0.04 1.04 1.33 -155.66 -0.21 0.83 16 16 C -0.51 -14.19 8.14 -34.45 -0.28 -14.47 16 17 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 18 C 0.08 2.25 5.39 -17.82 -0.10 2.15 16 19 N -0.87 -24.24 12.93 55.43 0.72 -23.53 16 20 Si 0.89 21.58 29.55 -169.99 -5.02 16.56 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.21 -4.64 9.96 -26.69 -0.27 -4.90 16 25 C -0.14 -3.22 9.44 -26.69 -0.25 -3.47 16 26 H 0.21 2.23 7.80 -54.09 -0.42 1.81 16 27 H 0.10 1.08 6.45 -51.93 -0.33 0.74 16 28 H 0.12 1.78 6.82 -51.93 -0.35 1.43 16 29 H 0.10 1.45 6.87 -51.93 -0.36 1.09 16 30 H 0.07 0.81 6.66 -51.93 -0.35 0.46 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.66 6.69 -51.93 -0.35 0.32 16 40 H 0.13 3.09 8.14 -51.93 -0.42 2.67 16 41 H 0.10 1.79 8.09 -51.92 -0.42 1.37 16 42 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 43 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 44 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -32.03 382.41 -10.57 -42.61 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.62 Total: 6.01 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: -1.68 Total: -38.93 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.43 Total: -39.55 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.88 Total: -45.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 53.86 SS G_CDS: -0.55 Total: 53.30 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.03 -10.57 -42.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491791901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.472 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds