Wall clock time and date at job start Tue Mar 31 2020 14:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47306 * 2 1 4 4 N 1.46498 * 109.46734 * 179.97438 * 3 2 1 5 5 C 1.34782 * 119.99708 * 180.02562 * 4 3 2 6 6 O 1.21586 * 120.00015 * 359.97438 * 5 4 3 7 7 C 1.47608 * 120.00122 * 180.02562 * 5 4 3 8 8 C 1.39739 * 120.08439 * 180.02562 * 7 5 4 9 9 C 1.37688 * 119.91800 * 180.02562 * 8 7 5 10 10 C 1.39039 * 120.07988 * 0.02562 * 9 8 7 11 11 O 1.35676 * 119.91534 * 179.70443 * 10 9 8 12 12 C 1.35647 * 118.00272 * 67.72074 * 11 10 9 13 13 C 1.39340 * 119.81899 * 6.01168 * 12 11 10 14 14 C 1.36417 * 120.18320 * 179.72059 * 13 12 11 15 15 C 1.40843 * 119.81412 * 0.54949 * 14 13 12 16 16 C 1.41189 * 120.18184 * 179.70137 * 15 14 13 17 17 H 1.07997 * 119.99656 * 34.54400 * 16 15 14 18 18 C 1.39890 * 120.00137 * 214.55288 * 16 15 14 19 19 N 1.30878 * 120.00240 * 356.18759 * 18 16 15 20 20 Si 1.86804 * 119.99842 * 176.19054 * 18 16 15 21 21 H 1.48507 * 109.47067 * 89.99708 * 20 18 16 22 22 H 1.48502 * 109.47056 * 209.99576 * 20 18 16 23 23 H 1.48497 * 109.47101 * 329.99628 * 20 18 16 24 24 C 1.40854 * 119.64517 * 359.72402 * 15 14 13 25 25 C 1.36417 * 119.81202 * 359.97438 * 24 15 14 26 26 C 1.39040 * 120.17036 * 359.97438 * 10 9 8 27 27 C 1.37692 * 120.08375 * 0.02562 * 26 10 9 28 28 H 1.09005 * 109.47004 * 59.99730 * 1 2 3 29 29 H 1.08990 * 109.47552 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47037 * 300.00198 * 1 2 3 31 31 H 1.09000 * 109.47037 * 239.99801 * 2 1 3 32 32 H 1.09000 * 109.46823 * 119.99831 * 2 1 3 33 33 H 1.09000 * 109.47234 * 59.99922 * 3 2 1 34 34 H 1.08992 * 109.47168 * 299.99951 * 3 2 1 35 35 H 0.96994 * 120.00380 * 0.02562 * 4 3 2 36 36 H 1.08005 * 120.04227 * 359.97438 * 8 7 5 37 37 H 1.08000 * 119.96025 * 179.97438 * 9 8 7 38 38 H 1.08006 * 119.91155 * 359.97438 * 13 12 11 39 39 H 1.08005 * 120.09260 * 180.25072 * 14 13 12 40 40 H 0.97001 * 120.00058 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.08996 * 179.97438 * 24 15 14 42 42 H 1.08003 * 119.90747 * 179.97438 * 25 24 15 43 43 H 1.08003 * 119.95549 * 180.02562 * 26 10 9 44 44 H 1.07999 * 120.04298 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1790 2.6096 0.0012 6 8 3.5711 3.6626 0.0008 7 6 5.6551 2.6095 0.0013 8 6 6.3556 3.8186 0.0025 9 6 7.7325 3.8146 0.0020 10 6 8.4258 2.6094 -0.0002 11 8 9.7826 2.6094 -0.0068 12 6 10.4248 3.0644 1.0980 13 6 9.6941 3.3943 2.2377 14 6 10.3329 3.8472 3.3547 15 6 11.7339 3.9920 3.3500 16 6 12.4024 4.4661 4.4997 17 1 12.0357 4.2083 5.4822 18 6 13.5395 5.2699 4.3661 19 7 14.0274 5.5211 3.1779 20 14 14.3615 5.9847 5.8836 21 1 15.3930 5.0385 6.3798 22 1 15.0026 7.2784 5.5363 23 1 13.3425 6.2053 6.9410 24 6 12.4645 3.6618 2.1919 25 6 11.8112 3.2043 1.0852 26 6 7.7324 1.4043 -0.0014 27 6 6.3554 1.4003 -0.0009 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6768 1.9564 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 3.9900 0.6023 0.0006 36 1 5.8177 4.7552 0.0030 37 1 8.2746 4.7487 0.0025 38 1 8.6194 3.2872 2.2381 39 1 9.7655 4.0987 4.2386 40 1 14.8161 6.0781 3.0853 41 1 13.5390 3.7705 2.1802 42 1 12.3698 2.9511 0.1963 43 1 8.2744 0.4702 -0.0027 44 1 5.8175 0.4639 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517663214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:43 Heat of formation + Delta-G solvation = -46.285683 kcal Electronic energy + Delta-G solvation = -25499.551416 eV Core-core repulsion = 21767.021415 eV Total energy + Delta-G solvation = -3732.530001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.82368 -40.90809 -39.19708 -38.01846 -36.82709 -35.24370 -33.79832 -32.15381 -32.05186 -31.19539 -30.81861 -27.46942 -26.86133 -24.71263 -23.84754 -22.90675 -22.66500 -22.55350 -21.42166 -19.49958 -19.28715 -18.87282 -17.56343 -17.17761 -17.02621 -16.77327 -16.48110 -16.04600 -15.77339 -15.49126 -15.34891 -14.87734 -14.66472 -14.48000 -14.35330 -14.09331 -13.83810 -13.80097 -13.53273 -13.48275 -13.28011 -13.01757 -12.91988 -12.80082 -12.51343 -12.32300 -12.02565 -11.75564 -11.73786 -11.71711 -11.31153 -11.15017 -11.02332 -10.25345 -10.15899 -9.75785 -9.61458 -8.85189 -8.52108 -6.33914 -0.41920 0.24485 0.86747 0.98502 1.40491 1.48035 1.54652 1.62512 2.08052 2.23880 2.41539 2.75660 2.85848 3.59504 3.65079 3.74149 3.81693 3.94552 4.09250 4.13334 4.24645 4.27649 4.32927 4.37125 4.44295 4.67731 4.75165 4.83172 4.87569 4.89227 5.00706 5.04796 5.15264 5.16574 5.19156 5.26083 5.27411 5.30195 5.33738 5.45561 5.49830 5.60031 5.75046 5.80414 6.04302 6.26155 6.45194 6.57181 6.79723 6.94926 7.03680 7.11630 8.42234 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.002082 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.965576 B =13444.136382 C =13889.205424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.115 3.885 4 N -0.711 5.711 5 C 0.562 3.438 6 O -0.581 6.581 7 C -0.158 4.158 8 C -0.048 4.048 9 C -0.161 4.161 10 C 0.114 3.886 11 O -0.277 6.277 12 C 0.000 4.000 13 C -0.155 4.155 14 C -0.195 4.195 15 C 0.055 3.945 16 C -0.496 4.496 17 H 0.075 0.925 18 C 0.027 3.973 19 N -0.844 5.844 20 Si 0.987 3.013 21 H -0.261 1.261 22 H -0.271 1.271 23 H -0.261 1.261 24 C -0.141 4.141 25 C -0.126 4.126 26 C -0.138 4.138 27 C -0.047 4.047 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.416 0.584 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.285 0.715 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.156 0.844 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.104 -12.068 -6.553 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.008 4.008 4 N -0.364 5.364 5 C 0.350 3.650 6 O -0.462 6.462 7 C -0.161 4.161 8 C -0.067 4.067 9 C -0.180 4.180 10 C 0.071 3.929 11 O -0.191 6.191 12 C -0.041 4.041 13 C -0.173 4.173 14 C -0.215 4.215 15 C 0.053 3.947 16 C -0.527 4.527 17 H 0.093 0.907 18 C -0.184 4.184 19 N -0.472 5.472 20 Si 0.809 3.191 21 H -0.186 1.186 22 H -0.196 1.196 23 H -0.185 1.185 24 C -0.160 4.160 25 C -0.144 4.144 26 C -0.156 4.156 27 C -0.066 4.066 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.255 0.745 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.174 0.826 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -19.279 -11.295 -6.824 23.363 hybrid contribution 0.829 0.643 0.564 1.191 sum -18.450 -10.652 -6.260 22.205 Atomic orbital electron populations 1.21696 0.94185 1.02833 1.02192 1.21709 0.97221 0.93706 1.03919 1.21536 0.78392 0.99155 1.01742 1.45821 1.08007 1.08254 1.74316 1.18269 0.87166 0.83979 0.75577 1.90763 1.70644 1.32856 1.51916 1.19961 0.92637 0.94796 1.08745 1.21105 0.92527 0.98649 0.94447 1.21484 0.94845 0.98250 1.03419 1.19381 0.82098 0.94249 0.97151 1.84049 1.16695 1.81166 1.37169 1.18767 0.91507 1.08186 0.85662 1.20627 0.98597 1.04592 0.93531 1.20898 0.94195 1.08221 0.98170 1.18027 0.91603 0.90736 0.94339 1.19685 1.10156 1.28940 0.93887 0.90673 1.26721 0.96079 0.95329 1.00306 1.69812 1.20548 1.31639 1.25221 0.85113 0.78454 0.78001 0.77573 1.18585 1.19566 1.18518 1.21173 1.00244 1.01004 0.93595 1.20080 0.91096 1.03960 0.99289 1.21363 0.94651 0.97412 1.02149 1.21432 0.92740 0.97846 0.94548 0.92494 0.91053 0.92651 0.89988 0.90196 0.92438 0.92189 0.74541 0.84634 0.85860 0.86517 0.87601 0.90462 0.85921 0.86512 0.82614 0.80607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 71.98 0.71 -0.33 16 2 C -0.13 -0.91 6.05 30.60 0.19 -0.72 16 3 C 0.11 1.57 5.67 86.38 0.49 2.06 16 4 N -0.71 -10.68 5.51 -466.20 -2.57 -13.25 16 5 C 0.56 13.37 7.76 86.72 0.67 14.04 16 6 O -0.58 -18.61 16.34 -3.99 -0.07 -18.67 16 7 C -0.16 -3.74 5.88 -20.08 -0.12 -3.85 16 8 C -0.05 -1.35 9.58 22.50 0.22 -1.14 16 9 C -0.16 -5.07 8.33 22.33 0.19 -4.88 16 10 C 0.11 3.68 4.70 22.65 0.11 3.79 16 11 O -0.28 -10.83 9.97 -30.57 -0.30 -11.14 16 12 C 0.00 0.00 6.56 22.80 0.15 0.15 16 13 C -0.15 -6.85 8.72 22.11 0.19 -6.65 16 14 C -0.20 -9.54 9.74 22.48 0.22 -9.32 16 15 C 0.05 2.96 5.55 -21.28 -0.12 2.84 16 16 C -0.50 -26.60 9.03 23.40 0.21 -26.39 16 17 H 0.08 3.87 7.85 -2.91 -0.02 3.85 16 18 C 0.03 1.38 5.42 85.24 0.46 1.84 16 19 N -0.84 -44.23 10.60 21.82 0.23 -44.00 16 20 Si 0.99 38.60 29.56 68.60 2.03 40.63 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 22 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 24 C -0.14 -7.36 8.62 22.48 0.19 -7.17 16 25 C -0.13 -5.92 9.92 22.11 0.22 -5.70 16 26 C -0.14 -3.29 9.97 22.33 0.22 -3.07 16 27 C -0.05 -0.87 9.53 22.50 0.21 -0.65 16 28 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.42 3.39 6.49 -92.71 -0.60 2.79 16 36 H 0.14 3.80 7.64 -2.91 -0.02 3.78 16 37 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 38 H 0.12 4.64 6.17 -2.91 -0.02 4.62 16 39 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 41 H 0.12 6.71 6.13 -2.91 -0.02 6.69 16 42 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 43 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 44 H 0.18 1.45 6.39 -2.91 -0.02 1.43 16 Total: -1.00 -66.80 372.45 4.16 -62.64 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.42 Total: 28.95 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 4.42 Total: -45.17 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -2.34 Total: -57.25 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.37 Total: -29.81 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -66.80 4.16 -62.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517663214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.357 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds