Wall clock time and date at job start Tue Mar 31 2020 16:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35900 * 116.99683 * 2 1 4 4 C 1.38748 * 120.05828 * 0.02991 * 3 2 1 5 5 C 1.38121 * 119.94587 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.05481 * 359.73950 * 5 4 3 7 7 C 1.38237 * 120.10921 * 0.51286 * 6 5 4 8 8 C 1.50697 * 119.97197 * 179.76676 * 7 6 5 9 9 H 1.09005 * 109.47560 * 179.72077 * 8 7 6 10 10 C 1.53004 * 109.47140 * 299.72154 * 8 7 6 11 11 C 1.50698 * 109.47296 * 59.72544 * 8 7 6 12 12 O 1.21277 * 119.99917 * 359.97438 * 11 8 7 13 13 N 1.34782 * 120.00331 * 180.02562 * 11 8 7 14 14 C 1.39122 * 120.00001 * 184.71752 * 13 11 8 15 15 C 1.38642 * 120.28845 * 325.82564 * 14 13 11 16 16 C 1.38218 * 120.03287 * 180.29252 * 15 14 13 17 17 C 1.38865 * 120.62026 * 359.45128 * 16 15 14 18 18 C 1.36468 * 120.57348 * 0.55172 * 17 16 15 19 19 C 1.40744 * 119.94068 * 359.72750 * 18 17 16 20 20 C 1.41071 * 120.29859 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99958 * 148.70250 * 20 19 18 22 22 C 1.39958 * 119.99887 * 328.70306 * 20 19 18 23 23 N 1.30857 * 119.99804 * 167.68847 * 22 20 19 24 24 Si 1.86803 * 120.00084 * 347.68803 * 22 20 19 25 25 H 1.48503 * 109.47109 * 92.56066 * 24 22 20 26 26 H 1.48501 * 109.46821 * 212.55700 * 24 22 20 27 27 H 1.48500 * 109.47076 * 332.55982 * 24 22 20 28 28 C 1.38166 * 120.05807 * 359.48814 * 7 6 5 29 29 H 1.08993 * 109.47342 * 59.99783 * 1 2 3 30 30 H 1.09000 * 109.46602 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46805 * 299.99465 * 1 2 3 32 32 H 1.08004 * 120.02972 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.97449 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.94559 * 180.28176 * 6 5 4 35 35 H 1.08998 * 109.47346 * 180.02562 * 10 8 7 36 36 H 1.08994 * 109.46960 * 300.00209 * 10 8 7 37 37 H 1.08995 * 109.46786 * 60.00101 * 10 8 7 38 38 H 0.97000 * 119.99523 * 4.72033 * 13 11 8 39 39 H 1.07997 * 119.97779 * 0.02562 * 15 14 13 40 40 H 1.08001 * 119.69089 * 179.70225 * 16 15 14 41 41 H 1.07998 * 119.71544 * 180.30465 * 17 16 15 42 42 H 1.07997 * 120.02756 * 179.74804 * 18 17 16 43 43 H 0.97004 * 119.99382 * 179.97438 * 23 22 20 44 44 H 1.08004 * 120.03392 * 180.27335 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9208 3.6047 0.0012 6 6 3.3019 3.6758 0.0065 7 6 4.0559 2.5172 0.0006 8 6 5.5607 2.5983 0.0012 9 1 5.9789 1.5917 0.0011 10 6 6.0316 3.3463 -1.2477 11 6 6.0237 3.3343 1.2320 12 8 5.2117 3.7522 2.0300 13 7 7.3402 3.5289 1.4456 14 6 7.7731 4.1207 2.6279 15 6 7.0085 5.1025 3.2392 16 6 7.4465 5.6912 4.4106 17 6 8.6453 5.3012 4.9929 18 6 9.4177 4.3373 4.4126 19 6 8.9974 3.7261 3.2165 20 6 9.7897 2.7285 2.6104 21 1 9.3211 1.9341 2.0486 22 6 11.1829 2.7683 2.7374 23 7 11.9014 1.7312 2.3903 24 14 12.0168 4.3020 3.4021 25 1 12.1897 4.1741 4.8715 26 1 13.3460 4.4607 2.7593 27 1 11.1777 5.4904 3.1040 28 6 3.4312 1.2849 0.0001 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2128 2.3203 0.0007 33 1 1.3339 4.5114 0.0021 34 1 3.7922 4.6381 0.0115 35 1 7.1201 3.4046 -1.2476 36 1 5.6968 2.8139 -2.1379 37 1 5.6135 4.3529 -1.2475 38 1 7.9858 3.2564 0.7749 39 1 6.0723 5.4104 2.7976 40 1 6.8488 6.4588 4.8795 41 1 8.9712 5.7675 5.9109 42 1 10.3505 4.0437 4.8709 43 1 12.8671 1.7590 2.4780 44 1 4.0207 0.3799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577097422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:46 Heat of formation + Delta-G solvation = -46.492926 kcal Electronic energy + Delta-G solvation = -26761.792712 eV Core-core repulsion = 23029.253723 eV Total energy + Delta-G solvation = -3732.538988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.69709 -40.85729 -39.43129 -38.28272 -35.60466 -35.45831 -34.84818 -32.29567 -31.73396 -30.63825 -29.69214 -28.13318 -27.00437 -25.65284 -23.95755 -23.53746 -22.93066 -21.83535 -20.74446 -19.35745 -18.98997 -18.24094 -18.00266 -17.12441 -17.03989 -16.81735 -16.60957 -16.20948 -15.89667 -15.54238 -15.34081 -15.13632 -14.76974 -14.44487 -14.36688 -14.26895 -13.91250 -13.69023 -13.43737 -13.24942 -13.20067 -12.95143 -12.82932 -12.68577 -12.39825 -12.35598 -12.28506 -11.90205 -11.75200 -11.67986 -11.60171 -11.15742 -10.91577 -10.49571 -9.80966 -9.48369 -9.11493 -8.88384 -8.83404 -6.45727 0.32071 0.51996 0.67662 0.83572 1.29928 1.40121 1.51608 1.77630 2.14302 2.26700 2.46569 2.64610 2.87174 3.50456 3.53571 3.79868 3.92796 4.12807 4.14013 4.21502 4.30764 4.34592 4.40609 4.40775 4.43831 4.56866 4.65733 4.69052 4.73785 4.82699 4.84923 4.90059 4.97883 5.06175 5.20484 5.25601 5.31934 5.33924 5.49138 5.61380 5.67242 5.72114 5.80979 5.96188 6.00493 6.15021 6.39096 6.47422 6.59781 6.82590 6.85514 7.35817 8.20789 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019171 B = 0.003025 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.182471 B = 9254.445961 C = 9863.307448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.112 3.888 4 C -0.208 4.208 5 C -0.086 4.086 6 C -0.134 4.134 7 C -0.033 4.033 8 C -0.065 4.065 9 H 0.115 0.885 10 C -0.136 4.136 11 C 0.507 3.493 12 O -0.560 6.560 13 N -0.640 5.640 14 C 0.029 3.971 15 C -0.092 4.092 16 C -0.216 4.216 17 C -0.095 4.095 18 C -0.237 4.237 19 C 0.060 3.940 20 C -0.472 4.472 21 H 0.067 0.933 22 C 0.052 3.948 23 N -0.848 5.848 24 Si 0.962 3.038 25 H -0.264 1.264 26 H -0.282 1.282 27 H -0.251 1.251 28 C -0.163 4.163 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.412 0.588 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.102 0.898 43 H 0.293 0.707 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.334 1.799 -8.425 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.067 3.933 4 C -0.226 4.226 5 C -0.104 4.104 6 C -0.152 4.152 7 C -0.034 4.034 8 C -0.086 4.086 9 H 0.133 0.867 10 C -0.193 4.193 11 C 0.295 3.705 12 O -0.438 6.438 13 N -0.283 5.283 14 C -0.066 4.066 15 C -0.112 4.112 16 C -0.236 4.236 17 C -0.114 4.114 18 C -0.257 4.257 19 C 0.055 3.945 20 C -0.502 4.502 21 H 0.086 0.914 22 C -0.163 4.163 23 N -0.475 5.475 24 Si 0.787 3.213 25 H -0.190 1.190 26 H -0.210 1.210 27 H -0.175 1.175 28 C -0.182 4.182 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.249 0.751 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.120 0.880 43 H 0.103 0.897 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.617 1.676 -7.974 18.507 hybrid contribution 0.864 0.008 0.212 0.890 sum -15.752 1.684 -7.762 17.642 Atomic orbital electron populations 1.23337 0.76445 1.05509 1.02266 1.86040 1.23523 1.26796 1.88876 1.19055 0.92153 0.84981 0.97160 1.21474 1.01099 0.91741 1.08313 1.21192 0.94104 0.98118 0.96952 1.20939 0.94401 0.97799 1.02097 1.19136 0.93520 0.92871 0.97845 1.20309 0.92885 1.01752 0.93678 0.86676 1.21808 1.02105 1.00440 0.94975 1.21062 0.81722 0.79610 0.88093 1.90630 1.53774 1.51388 1.48043 1.42955 1.07622 1.59225 1.18476 1.17871 0.98757 0.99032 0.90946 1.20994 0.98826 0.94587 0.96786 1.20770 0.98723 1.05225 0.98860 1.20725 0.94674 0.96578 0.99379 1.20805 1.02291 1.04607 0.97989 1.17744 0.92920 0.92279 0.91510 1.19204 0.91481 1.08704 1.30764 0.91449 1.26694 0.97961 0.99303 0.92332 1.69687 1.08901 1.30404 1.38487 0.85550 0.76887 0.80168 0.78695 1.18964 1.20953 1.17465 1.20398 0.92309 0.97970 1.07492 0.91316 0.86409 0.92047 0.83023 0.83462 0.86504 0.90818 0.89206 0.91756 0.75051 0.86358 0.85603 0.85486 0.88009 0.89699 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.90 10.50 -92.42 -0.97 -8.87 16 3 C 0.11 2.86 6.69 22.51 0.15 3.01 16 4 C -0.21 -4.53 9.04 22.36 0.20 -4.33 16 5 C -0.09 -1.96 10.04 22.26 0.22 -1.74 16 6 C -0.13 -3.65 7.92 22.28 0.18 -3.48 16 7 C -0.03 -0.94 4.40 -19.88 -0.09 -1.03 16 8 C -0.07 -1.81 2.91 -12.29 -0.04 -1.85 16 9 H 0.12 2.98 7.88 -2.38 -0.02 2.96 16 10 C -0.14 -2.94 8.90 71.98 0.64 -2.30 16 11 C 0.51 18.73 6.86 87.66 0.60 19.33 16 12 O -0.56 -24.05 12.46 -3.02 -0.04 -24.09 16 13 N -0.64 -25.46 4.86 -302.29 -1.47 -26.93 16 14 C 0.03 1.33 6.35 38.88 0.25 1.58 16 15 C -0.09 -4.07 8.70 22.36 0.19 -3.88 16 16 C -0.22 -8.90 10.04 22.42 0.22 -8.67 16 17 C -0.10 -3.97 9.97 22.01 0.22 -3.75 16 18 C -0.24 -11.17 6.94 22.47 0.16 -11.02 16 19 C 0.06 2.97 5.14 -21.18 -0.11 2.86 16 20 C -0.47 -24.76 8.85 23.38 0.21 -24.55 16 21 H 0.07 3.72 7.70 -2.91 -0.02 3.70 16 22 C 0.05 2.65 5.47 85.25 0.47 3.11 16 23 N -0.85 -44.44 13.93 21.83 0.30 -44.14 16 24 Si 0.96 41.56 24.40 68.60 1.67 43.23 16 25 H -0.26 -10.98 6.67 99.48 0.66 -10.32 16 26 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.25 -11.07 6.68 99.48 0.66 -10.40 16 28 C -0.16 -4.55 9.61 22.37 0.21 -4.34 16 29 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 30 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 32 H 0.15 2.33 6.30 -2.91 -0.02 2.31 16 33 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.12 3.21 7.51 -2.91 -0.02 3.19 16 35 H 0.07 1.52 7.46 -2.39 -0.02 1.51 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.39 7.40 -2.39 -0.02 1.37 16 38 H 0.41 15.09 7.32 -92.71 -0.68 14.41 16 39 H 0.12 5.19 6.15 -2.91 -0.02 5.17 16 40 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 42 H 0.10 4.74 4.42 -2.91 -0.01 4.72 16 43 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 44 H 0.13 3.43 7.95 -2.91 -0.02 3.41 16 Total: -1.00 -65.47 358.39 4.58 -60.89 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: 0.27 Total: 39.59 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 4.80 Total: -39.69 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.17 Total: -71.06 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.01 Total: -32.96 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.67 Total: 43.23 kcal Total: -65.47 4.58 -60.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577097422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.402 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds