Wall clock time and date at job start Tue Mar 31 2020 14:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47002 * 2 1 4 4 H 1.09002 * 109.47229 * 179.25775 * 3 2 1 5 5 C 1.50703 * 109.47173 * 299.25883 * 3 2 1 6 6 H 1.07994 * 119.99938 * 119.99536 * 5 3 2 7 7 C 1.37881 * 119.99943 * 299.99962 * 5 3 2 8 8 N 1.31511 * 119.99595 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 119.99939 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47242 * 90.00088 * 9 7 5 11 11 H 1.48500 * 109.47136 * 209.99976 * 9 7 5 12 12 H 1.48501 * 109.47427 * 330.00189 * 9 7 5 13 13 N 1.46904 * 109.47101 * 59.25862 * 3 2 1 14 14 C 1.46899 * 110.99567 * 85.93782 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.55235 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 O 1.42897 * 109.47280 * 65.00139 * 15 14 13 18 18 C 1.53003 * 109.47429 * 185.00333 * 15 14 13 19 19 O 1.42899 * 109.47571 * 175.00027 * 18 15 14 20 20 C 1.36000 * 116.99845 * 179.97438 * 19 18 15 21 21 C 1.38709 * 119.97894 * 359.72711 * 20 19 18 22 22 C 1.38087 * 120.02496 * 179.76710 * 21 20 19 23 23 C 1.38923 * 119.97399 * 0.52514 * 22 21 20 24 24 S 1.76202 * 120.02105 * 179.70174 * 23 22 21 25 25 C 1.81396 * 103.00329 * 0.02568 * 24 23 22 26 26 C 1.38918 * 119.94833 * 359.72820 * 23 22 21 27 27 C 1.38082 * 119.97857 * 359.97438 * 26 23 22 28 28 H 1.09004 * 109.46565 * 175.55531 * 1 2 3 29 29 H 1.09002 * 109.47004 * 55.56255 * 1 2 3 30 30 H 1.08990 * 109.47453 * 295.55906 * 1 2 3 31 31 H 1.08994 * 109.47601 * 119.99860 * 2 1 3 32 32 H 1.09000 * 109.47695 * 240.00300 * 2 1 3 33 33 H 0.97002 * 119.99463 * 179.97438 * 8 7 5 34 34 H 1.00896 * 110.99507 * 209.89683 * 13 3 2 35 35 H 1.08995 * 109.47219 * 295.54936 * 14 13 3 36 36 H 1.08999 * 109.47280 * 55.55612 * 14 13 3 37 37 H 0.96703 * 114.00320 * 59.99934 * 17 15 14 38 38 H 1.09005 * 109.46790 * 295.00086 * 18 15 14 39 39 H 1.08996 * 109.47099 * 54.99426 * 18 15 14 40 40 H 1.08000 * 119.98683 * 0.02562 * 21 20 19 41 41 H 1.08007 * 120.01235 * 180.25895 * 22 21 20 42 42 H 1.09004 * 109.47011 * 59.99870 * 25 24 23 43 43 H 1.09003 * 109.47321 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.47088 * 299.99667 * 25 24 23 45 45 H 1.08002 * 120.00502 * 179.97438 * 26 23 22 46 46 H 1.07997 * 119.98690 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 0.0133 5 6 1.5527 2.1476 -1.2396 6 1 0.9306 3.0260 -1.1518 7 6 1.9010 1.6712 -2.4857 8 7 1.4753 2.2863 -3.5673 9 14 2.9775 0.1522 -2.6374 10 1 2.1201 -1.0592 -2.6878 11 1 3.7845 0.2395 -3.8809 12 1 3.8839 0.0685 -1.4640 13 7 1.5357 2.1402 1.1904 14 6 2.4174 1.9174 2.3440 15 6 1.9228 2.7459 3.5314 16 1 1.8474 3.7930 3.2376 17 8 0.6381 2.2724 3.9404 18 6 2.9094 2.6120 4.6931 19 8 2.5100 3.4756 5.7593 20 6 3.2857 3.4768 6.8764 21 6 4.4039 2.6588 6.9446 22 6 5.1949 2.6629 8.0765 23 6 4.8643 3.4785 9.1514 24 16 5.8683 3.4788 10.5994 25 6 7.1691 2.2811 10.1943 26 6 3.7412 4.2934 9.0840 27 6 2.9551 4.2923 7.9487 28 1 -0.3632 -1.0246 -0.0796 29 1 -0.3633 0.5812 -0.8476 30 1 -0.3634 0.4433 0.9270 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.7207 1.9513 -4.4440 34 1 1.4189 3.1259 1.0094 35 1 2.4081 0.8604 2.6096 36 1 3.4332 2.2190 2.0886 37 1 0.6300 1.3456 4.2162 38 1 2.9182 1.5804 5.0451 39 1 3.9080 2.8893 4.3556 40 1 4.6583 2.0217 6.1106 41 1 6.0678 2.0290 8.1278 42 1 7.7097 2.6173 9.3095 43 1 7.8602 2.1977 11.0330 44 1 6.7186 1.3083 9.9971 45 1 3.4831 4.9275 9.9192 46 1 2.0823 4.9261 7.8960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583639313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:33 Heat of formation + Delta-G solvation = -60.364224 kcal Electronic energy + Delta-G solvation = -24678.730210 eV Core-core repulsion = 21081.033668 eV Total energy + Delta-G solvation = -3597.696541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41331 -38.34280 -37.14986 -35.89812 -32.68878 -31.82647 -31.48050 -30.63229 -29.70273 -29.00714 -26.97051 -24.73817 -23.15200 -23.10104 -22.44692 -21.42749 -19.42565 -18.62275 -17.74129 -16.95523 -16.63124 -16.50176 -15.74137 -15.44301 -15.29906 -14.94826 -14.79797 -14.26361 -14.15182 -14.07788 -13.72844 -13.46331 -13.38043 -13.19580 -12.99519 -12.90890 -12.68696 -12.35344 -12.09418 -11.91423 -11.42055 -11.40436 -11.13364 -10.81547 -10.75440 -10.64560 -10.58894 -10.27578 -10.09247 -9.80669 -9.49062 -9.35404 -9.33042 -9.00564 -8.61843 -7.56551 -7.54506 -6.14120 -4.13280 0.93586 0.94525 1.15857 2.02579 2.87284 3.22599 3.30620 3.32921 3.33455 4.33459 4.34434 4.40123 4.46184 4.59124 4.59348 4.60098 4.80988 4.84291 4.95589 5.10468 5.11902 5.18527 5.20619 5.28568 5.31353 5.47711 5.57039 5.71032 5.85404 5.91481 5.97249 6.06217 6.14676 6.17765 6.31423 6.43313 6.65578 6.86265 7.07405 7.13379 7.18119 7.46690 7.55461 7.76487 7.84814 8.25959 8.55118 8.90845 9.47794 10.98654 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024077 B = 0.002012 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.670505 B =13912.976132 C =14436.188786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C 0.185 3.815 4 H -0.001 1.001 5 C -0.515 4.515 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.270 1.270 13 N -0.664 5.664 14 C 0.031 3.969 15 C 0.115 3.885 16 H 0.107 0.893 17 O -0.538 6.538 18 C 0.027 3.973 19 O -0.299 6.299 20 C 0.134 3.866 21 C -0.193 4.193 22 C -0.091 4.091 23 C -0.127 4.127 24 S -0.125 6.125 25 C -0.143 4.143 26 C -0.058 4.058 27 C -0.134 4.134 28 H 0.019 0.981 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.040 0.960 33 H 0.264 0.736 34 H 0.342 0.658 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.370 0.630 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.134 0.866 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.409 -0.546 26.798 28.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 C 0.076 3.924 4 H 0.017 0.983 5 C -0.553 4.553 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.295 5.295 14 C -0.100 4.100 15 C 0.055 3.945 16 H 0.125 0.875 17 O -0.341 6.341 18 C -0.049 4.049 19 O -0.212 6.212 20 C 0.086 3.914 21 C -0.213 4.213 22 C -0.114 4.114 23 C -0.240 4.240 24 S 0.115 5.885 25 C -0.312 4.312 26 C -0.082 4.082 27 C -0.154 4.154 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.161 0.839 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.216 0.784 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.152 0.848 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.606 0.259 27.640 28.950 hybrid contribution 2.037 -1.896 -1.656 3.238 sum 10.643 -1.637 25.984 28.127 Atomic orbital electron populations 1.21472 0.95367 0.98301 1.03141 1.21740 0.97565 0.98051 0.97619 1.19615 0.92680 0.91407 0.88668 0.98339 1.21016 1.32553 1.13362 0.88363 0.90244 1.24903 0.95520 0.96756 0.95759 1.69886 1.45244 1.40412 0.97845 0.86856 0.80780 0.83839 0.76734 1.20359 1.22543 1.19559 1.60415 1.47974 1.16799 1.04355 1.22548 0.95214 0.99612 0.92596 1.21951 0.82633 1.00189 0.89729 0.87506 1.86661 1.29054 1.31245 1.87179 1.23726 0.99997 0.93738 0.87486 1.86203 1.49925 1.61967 1.23141 1.19109 0.90216 0.94728 0.87383 1.21189 0.96985 1.03063 1.00065 1.20938 0.99546 0.98409 0.92530 1.21516 1.00835 1.03482 0.98132 1.85405 1.27764 1.55087 1.20226 1.23656 1.00007 1.01052 1.06472 1.20561 0.92636 0.97453 0.97509 1.20408 1.01988 1.01345 0.91684 0.96172 0.91341 0.92451 0.95337 0.94137 0.92559 0.83936 0.91279 0.95055 0.78370 0.91620 0.91111 0.85057 0.85696 0.89771 0.87426 0.89790 0.84793 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.52 37.16 0.35 -2.25 16 2 C -0.11 -2.40 5.29 -26.73 -0.14 -2.54 16 3 C 0.19 4.17 1.89 -68.86 -0.13 4.04 16 4 H 0.00 -0.02 6.77 -51.93 -0.35 -0.37 16 5 C -0.51 -13.80 7.87 -34.44 -0.27 -14.08 16 6 H 0.08 2.32 7.85 -52.49 -0.41 1.91 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 9 Si 0.89 21.60 24.38 -169.99 -4.14 17.46 16 10 H -0.28 -6.63 6.86 56.52 0.39 -6.24 16 11 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.66 -12.60 5.57 -107.95 -0.60 -13.20 16 14 C 0.03 0.45 5.17 -3.82 -0.02 0.43 16 15 C 0.12 1.47 3.39 -26.73 -0.09 1.38 16 16 H 0.11 1.46 8.12 -51.93 -0.42 1.04 16 17 O -0.54 -7.54 13.25 -40.08 -0.53 -8.07 16 18 C 0.03 0.28 4.37 37.16 0.16 0.44 16 19 O -0.30 -3.68 10.10 -24.59 -0.25 -3.93 16 20 C 0.13 1.49 6.69 -39.23 -0.26 1.23 16 21 C -0.19 -1.89 9.03 -39.46 -0.36 -2.24 16 22 C -0.09 -0.82 9.36 -39.38 -0.37 -1.19 16 23 C -0.13 -1.20 6.11 -39.08 -0.24 -1.44 16 24 S -0.13 -1.00 22.56 -107.50 -2.43 -3.43 16 25 C -0.14 -0.72 9.15 101.05 0.92 0.20 16 26 C -0.06 -0.55 9.78 -39.39 -0.39 -0.93 16 27 C -0.13 -1.36 9.98 -39.46 -0.39 -1.76 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 1.61 7.09 -51.93 -0.37 1.24 16 30 H 0.06 1.14 7.73 -51.93 -0.40 0.73 16 31 H 0.03 0.54 7.62 -51.93 -0.40 0.14 16 32 H 0.04 0.93 3.26 -51.93 -0.17 0.76 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.34 6.67 8.13 -39.29 -0.32 6.35 16 35 H 0.07 0.96 7.62 -51.93 -0.40 0.57 16 36 H 0.03 0.46 7.94 -51.93 -0.41 0.04 16 37 H 0.37 3.98 9.05 45.56 0.41 4.39 16 38 H 0.07 0.59 7.65 -51.93 -0.40 0.20 16 39 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 40 H 0.13 1.09 6.29 -52.49 -0.33 0.76 16 41 H 0.13 0.87 5.87 -52.48 -0.31 0.56 16 42 H 0.08 0.39 7.75 -51.92 -0.40 -0.01 16 43 H 0.11 0.38 8.14 -51.92 -0.42 -0.04 16 44 H 0.08 0.38 7.74 -51.92 -0.40 -0.02 16 45 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -31.14 378.23 -9.14 -40.28 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.35 Total: 7.91 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.31 Total: -16.75 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.17 Total: -39.16 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.78 Total: -12.00 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.14 Total: 17.46 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.43 Total: -3.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.14 -9.14 -40.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583639313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.084 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds