Wall clock time and date at job start Tue Mar 31 2020 14:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47002 * 2 1 4 4 H 1.09002 * 109.47229 * 179.25775 * 3 2 1 5 5 C 1.50703 * 109.47173 * 299.25883 * 3 2 1 6 6 H 1.07994 * 119.99938 * 119.99536 * 5 3 2 7 7 C 1.37881 * 119.99943 * 299.99962 * 5 3 2 8 8 N 1.31511 * 119.99595 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 119.99939 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47242 * 90.00088 * 9 7 5 11 11 H 1.48500 * 109.47136 * 209.99976 * 9 7 5 12 12 H 1.48501 * 109.47427 * 330.00189 * 9 7 5 13 13 N 1.46904 * 109.47101 * 59.25862 * 3 2 1 14 14 C 1.46899 * 110.99567 * 85.93782 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.55235 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 O 1.42897 * 109.47280 * 65.00139 * 15 14 13 18 18 C 1.53003 * 109.47429 * 185.00333 * 15 14 13 19 19 O 1.42899 * 109.47571 * 175.00027 * 18 15 14 20 20 C 1.36000 * 116.99845 * 179.97438 * 19 18 15 21 21 C 1.38709 * 119.97894 * 359.72711 * 20 19 18 22 22 C 1.38087 * 120.02496 * 179.76710 * 21 20 19 23 23 C 1.38923 * 119.97399 * 0.52514 * 22 21 20 24 24 S 1.76202 * 120.02105 * 179.70174 * 23 22 21 25 25 C 1.81396 * 103.00329 * 0.02568 * 24 23 22 26 26 C 1.38918 * 119.94833 * 359.72820 * 23 22 21 27 27 C 1.38082 * 119.97857 * 359.97438 * 26 23 22 28 28 H 1.09004 * 109.46565 * 175.55531 * 1 2 3 29 29 H 1.09002 * 109.47004 * 55.56255 * 1 2 3 30 30 H 1.08990 * 109.47453 * 295.55906 * 1 2 3 31 31 H 1.08994 * 109.47601 * 119.99860 * 2 1 3 32 32 H 1.09000 * 109.47695 * 240.00300 * 2 1 3 33 33 H 0.97002 * 119.99463 * 179.97438 * 8 7 5 34 34 H 1.00896 * 110.99507 * 209.89683 * 13 3 2 35 35 H 1.08995 * 109.47219 * 295.54936 * 14 13 3 36 36 H 1.08999 * 109.47280 * 55.55612 * 14 13 3 37 37 H 0.96703 * 114.00320 * 59.99934 * 17 15 14 38 38 H 1.09005 * 109.46790 * 295.00086 * 18 15 14 39 39 H 1.08996 * 109.47099 * 54.99426 * 18 15 14 40 40 H 1.08000 * 119.98683 * 0.02562 * 21 20 19 41 41 H 1.08007 * 120.01235 * 180.25895 * 22 21 20 42 42 H 1.09004 * 109.47011 * 59.99870 * 25 24 23 43 43 H 1.09003 * 109.47321 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.47088 * 299.99667 * 25 24 23 45 45 H 1.08002 * 120.00502 * 179.97438 * 26 23 22 46 46 H 1.07997 * 119.98690 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 0.0133 5 6 1.5527 2.1476 -1.2396 6 1 0.9306 3.0260 -1.1518 7 6 1.9010 1.6712 -2.4857 8 7 1.4753 2.2863 -3.5673 9 14 2.9775 0.1522 -2.6374 10 1 2.1201 -1.0592 -2.6878 11 1 3.7845 0.2395 -3.8809 12 1 3.8839 0.0685 -1.4640 13 7 1.5357 2.1402 1.1904 14 6 2.4174 1.9174 2.3440 15 6 1.9228 2.7459 3.5314 16 1 1.8474 3.7930 3.2376 17 8 0.6381 2.2724 3.9404 18 6 2.9094 2.6120 4.6931 19 8 2.5100 3.4756 5.7593 20 6 3.2857 3.4768 6.8764 21 6 4.4039 2.6588 6.9446 22 6 5.1949 2.6629 8.0765 23 6 4.8643 3.4785 9.1514 24 16 5.8683 3.4788 10.5994 25 6 7.1691 2.2811 10.1943 26 6 3.7412 4.2934 9.0840 27 6 2.9551 4.2923 7.9487 28 1 -0.3632 -1.0246 -0.0796 29 1 -0.3633 0.5812 -0.8476 30 1 -0.3634 0.4433 0.9270 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.7207 1.9513 -4.4440 34 1 1.4189 3.1259 1.0094 35 1 2.4081 0.8604 2.6096 36 1 3.4332 2.2190 2.0886 37 1 0.6300 1.3456 4.2162 38 1 2.9182 1.5804 5.0451 39 1 3.9080 2.8893 4.3556 40 1 4.6583 2.0217 6.1106 41 1 6.0678 2.0290 8.1278 42 1 7.7097 2.6173 9.3095 43 1 7.8602 2.1977 11.0330 44 1 6.7186 1.3083 9.9971 45 1 3.4831 4.9275 9.9192 46 1 2.0823 4.9261 7.8960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583639313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:32 Heat of formation + Delta-G solvation = -82.404254 kcal Electronic energy + Delta-G solvation = -24679.685937 eV Core-core repulsion = 21081.033668 eV Total energy + Delta-G solvation = -3598.652269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18920 -39.34895 -38.26882 -37.25810 -34.45390 -33.23087 -32.45341 -31.49157 -30.59660 -29.62095 -28.63507 -25.98925 -24.92781 -23.87454 -23.29708 -22.41742 -21.16796 -19.38372 -18.69430 -18.36329 -17.80398 -17.55328 -17.19512 -16.47873 -16.06453 -15.87620 -15.71398 -15.43887 -15.28142 -14.98742 -14.80664 -14.68335 -14.63900 -14.62708 -14.05220 -13.77516 -13.60422 -13.50074 -13.20577 -12.94324 -12.88284 -12.57331 -12.45305 -12.20809 -12.16091 -12.06840 -11.84209 -11.67358 -11.25112 -11.21676 -11.00953 -10.86782 -10.65143 -10.18108 -10.03964 -9.07438 -8.29089 -8.21138 -6.31752 0.21093 0.24761 0.60249 1.30984 1.33523 1.43928 1.49493 2.04700 2.31163 2.61289 3.06651 3.36344 3.55374 3.71410 3.83138 3.88600 4.01519 4.07821 4.18851 4.25825 4.26861 4.30405 4.34043 4.40289 4.43883 4.50472 4.55888 4.69742 4.76655 4.83698 4.91647 4.94599 4.99631 5.05632 5.17953 5.21944 5.25961 5.36784 5.40816 5.61450 5.65767 5.79176 6.00412 6.36669 6.49523 6.66473 6.81674 6.93780 7.33440 8.87378 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024077 B = 0.002012 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.670505 B =13912.976132 C =14436.188786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.113 4.113 3 C 0.190 3.810 4 H -0.003 1.003 5 C -0.510 4.510 6 H 0.038 0.962 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.302 1.302 12 H -0.248 1.248 13 N -0.669 5.669 14 C 0.033 3.967 15 C 0.124 3.876 16 H 0.091 0.909 17 O -0.558 6.558 18 C 0.033 3.967 19 O -0.320 6.320 20 C 0.113 3.887 21 C -0.195 4.195 22 C -0.094 4.094 23 C -0.134 4.134 24 S -0.149 6.149 25 C -0.137 4.137 26 C -0.066 4.066 27 C -0.145 4.145 28 H 0.044 0.956 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.334 0.666 35 H 0.086 0.914 36 H 0.039 0.961 37 H 0.384 0.616 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.091 0.909 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.146 0.854 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.422 -2.864 29.075 31.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.151 4.151 3 C 0.081 3.919 4 H 0.014 0.986 5 C -0.549 4.549 6 H 0.056 0.944 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.230 1.230 12 H -0.172 1.172 13 N -0.300 5.300 14 C -0.097 4.097 15 C 0.064 3.936 16 H 0.109 0.891 17 O -0.364 6.364 18 C -0.043 4.043 19 O -0.234 6.234 20 C 0.065 3.935 21 C -0.215 4.215 22 C -0.118 4.118 23 C -0.247 4.247 24 S 0.091 5.909 25 C -0.305 4.305 26 C -0.089 4.089 27 C -0.166 4.166 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.233 0.767 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.111 0.889 45 H 0.164 0.836 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.626 -2.072 29.965 31.861 hybrid contribution 1.388 -1.087 -2.243 2.853 sum 12.014 -3.159 27.722 30.378 Atomic orbital electron populations 1.21367 0.95186 0.99170 1.01778 1.21724 0.97737 0.96992 0.98663 1.19447 0.92240 0.92184 0.88066 0.98599 1.21283 1.30952 1.12116 0.90524 0.94382 1.25741 0.97158 0.99993 0.95409 1.70042 1.47550 1.42653 0.98488 0.85873 0.79321 0.80141 0.77186 1.19401 1.22974 1.17174 1.60366 1.49216 1.16042 1.04329 1.22616 0.94695 1.01007 0.91350 1.21746 0.82836 0.98914 0.90107 0.89103 1.86629 1.29856 1.32641 1.87301 1.23627 0.99462 0.94743 0.86487 1.86148 1.50767 1.62690 1.23801 1.19296 0.91014 0.95877 0.87283 1.21389 0.96465 1.02841 1.00803 1.21224 1.00069 0.98437 0.92058 1.21746 1.00905 1.03255 0.98762 1.85497 1.28920 1.56538 1.19948 1.23765 0.99015 1.00241 1.07509 1.20765 0.92710 0.97751 0.97641 1.20573 1.02426 1.01578 0.91990 0.93742 0.95163 0.91728 0.91875 0.95248 0.92646 0.84828 0.89548 0.94304 0.76724 0.89523 0.89862 0.83508 0.83551 0.89033 0.85751 0.88941 0.83623 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 9.52 71.98 0.69 -3.99 16 2 C -0.11 -4.55 5.29 30.59 0.16 -4.38 16 3 C 0.19 8.32 1.89 44.17 0.08 8.40 16 4 H 0.00 -0.15 6.77 -2.39 -0.02 -0.17 16 5 C -0.51 -27.96 7.87 25.60 0.20 -27.76 16 6 H 0.04 2.34 7.85 -2.91 -0.02 2.32 16 7 C 0.01 0.83 5.45 84.66 0.46 1.29 16 8 N -0.95 -58.41 13.96 21.45 0.30 -58.11 16 9 Si 0.95 44.05 24.38 68.60 1.67 45.72 16 10 H -0.27 -11.99 6.86 99.48 0.68 -11.31 16 11 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.25 -10.53 6.53 99.48 0.65 -9.88 16 13 N -0.67 -24.72 5.57 -495.43 -2.76 -27.48 16 14 C 0.03 0.89 5.17 86.30 0.45 1.34 16 15 C 0.12 2.97 3.39 30.60 0.10 3.08 16 16 H 0.09 2.46 8.12 -2.38 -0.02 2.44 16 17 O -0.56 -14.80 13.25 -144.34 -1.91 -16.72 16 18 C 0.03 0.61 4.37 71.98 0.31 0.93 16 19 O -0.32 -7.50 10.10 -88.91 -0.90 -8.40 16 20 C 0.11 2.38 6.69 22.50 0.15 2.53 16 21 C -0.19 -3.39 9.03 22.35 0.20 -3.19 16 22 C -0.09 -1.49 9.36 22.40 0.21 -1.28 16 23 C -0.13 -2.33 6.11 22.60 0.14 -2.19 16 24 S -0.15 -2.15 22.56 -56.49 -1.27 -3.43 16 25 C -0.14 -1.00 9.15 113.37 1.04 0.04 16 26 C -0.07 -1.17 9.78 22.40 0.22 -0.96 16 27 C -0.15 -2.89 9.98 22.35 0.22 -2.67 16 28 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.03 1.40 7.09 -2.39 -0.02 1.39 16 30 H 0.06 2.44 7.73 -2.39 -0.02 2.42 16 31 H 0.06 2.11 7.62 -2.39 -0.02 2.10 16 32 H 0.03 1.25 3.26 -2.39 -0.01 1.24 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.33 13.21 8.13 -89.70 -0.73 12.48 16 35 H 0.09 2.05 7.62 -2.39 -0.02 2.03 16 36 H 0.04 1.02 7.94 -2.39 -0.02 1.00 16 37 H 0.38 7.36 9.05 -74.05 -0.67 6.69 16 38 H 0.09 1.26 7.65 -2.38 -0.02 1.25 16 39 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 40 H 0.15 1.98 6.29 -2.91 -0.02 1.96 16 41 H 0.15 1.58 5.87 -2.91 -0.02 1.56 16 42 H 0.09 0.57 7.75 -2.39 -0.02 0.55 16 43 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.09 0.55 7.74 -2.39 -0.02 0.53 16 45 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -68.78 378.23 -0.72 -69.50 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -0.48 Total: 27.74 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.64 Total: -28.83 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -2.46 Total: -85.59 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -2.81 Total: -25.12 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.67 Total: 45.72 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -1.27 Total: -3.43 kcal Total: -68.78 -0.72 -69.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583639313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.909 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds