Wall clock time and date at job start Tue Mar 31 2020 14:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46802 * 2 1 4 4 H 1.09004 * 109.47221 * 179.82324 * 3 2 1 5 5 C 1.50701 * 109.47253 * 299.82086 * 3 2 1 6 6 H 1.07998 * 120.00010 * 120.00123 * 5 3 2 7 7 C 1.37881 * 119.99649 * 300.00117 * 5 3 2 8 8 N 1.31512 * 120.00398 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99702 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46888 * 90.00345 * 9 7 5 11 11 H 1.48490 * 109.47308 * 209.99940 * 9 7 5 12 12 H 1.48496 * 109.47294 * 330.00346 * 9 7 5 13 13 N 1.46891 * 109.47435 * 59.82280 * 3 2 1 14 14 C 1.46905 * 111.00213 * 85.84905 * 13 3 2 15 15 C 1.53004 * 109.46945 * 175.81349 * 14 13 3 16 16 H 1.08994 * 109.47087 * 60.00662 * 15 14 13 17 17 O 1.42900 * 109.47204 * 300.00363 * 15 14 13 18 18 C 1.53001 * 109.46706 * 180.02562 * 15 14 13 19 19 O 1.42897 * 109.47015 * 185.00233 * 18 15 14 20 20 C 1.36005 * 117.00332 * 179.97438 * 19 18 15 21 21 C 1.38702 * 119.97805 * 179.97438 * 20 19 18 22 22 C 1.38092 * 120.02751 * 179.70211 * 21 20 19 23 23 C 1.38925 * 119.97199 * 0.27552 * 22 21 20 24 24 S 1.76197 * 120.02536 * 180.02562 * 23 22 21 25 25 C 1.81398 * 103.00297 * 179.97438 * 24 23 22 26 26 C 1.38923 * 119.94909 * 359.97438 * 23 22 21 27 27 C 1.38084 * 119.97483 * 0.02562 * 26 23 22 28 28 H 1.08994 * 109.47315 * 295.59912 * 1 2 3 29 29 H 1.09000 * 109.47456 * 55.59948 * 1 2 3 30 30 H 1.09009 * 109.47060 * 175.60087 * 1 2 3 31 31 H 1.09006 * 109.47359 * 240.00225 * 2 1 3 32 32 H 1.09000 * 109.47581 * 119.99966 * 2 1 3 33 33 H 0.97001 * 119.99916 * 179.97438 * 8 7 5 34 34 H 1.00899 * 111.00254 * 209.80703 * 13 3 2 35 35 H 1.08994 * 109.46687 * 55.81767 * 14 13 3 36 36 H 1.08993 * 109.47081 * 295.82039 * 14 13 3 37 37 H 0.96702 * 113.99684 * 299.99810 * 17 15 14 38 38 H 1.08999 * 109.47382 * 64.99884 * 18 15 14 39 39 H 1.09002 * 109.47107 * 305.00048 * 18 15 14 40 40 H 1.08000 * 119.98911 * 359.97438 * 21 20 19 41 41 H 1.08002 * 120.01472 * 180.29941 * 22 21 20 42 42 H 1.09004 * 109.46716 * 59.99310 * 25 24 23 43 43 H 1.08997 * 109.47285 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.46769 * 300.00298 * 25 24 23 45 45 H 1.08003 * 120.00676 * 180.02562 * 26 23 22 46 46 H 1.08004 * 119.98932 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 0.0032 5 6 1.5412 2.1517 -1.2327 6 1 0.9199 3.0298 -1.1363 7 6 1.8780 1.6793 -2.4835 8 7 2.6349 0.6102 -2.6008 9 14 1.2592 2.5579 -4.0115 10 1 2.2381 3.5995 -4.4141 11 1 1.0977 1.5775 -5.1150 12 1 -0.0500 3.1952 -3.7200 13 7 1.5467 2.1363 1.1972 14 6 2.4380 1.9081 2.3425 15 6 1.9507 2.7278 3.5391 16 1 0.9377 2.4221 3.8005 17 8 1.9568 4.1159 3.1997 18 6 2.8794 2.4907 4.7317 19 8 2.3601 3.1629 5.8807 20 6 3.0711 3.0522 7.0348 21 6 2.6236 3.6805 8.1876 22 6 3.3415 3.5637 9.3614 23 6 4.5155 2.8213 9.3860 24 16 5.4323 2.6708 10.8831 25 6 6.8379 1.6316 10.3983 26 6 4.9656 2.1968 8.2295 27 6 4.2460 2.3150 7.0569 28 1 -0.3633 0.4440 0.9267 29 1 -0.3634 0.5806 -0.8479 30 1 -0.3634 -1.0247 -0.0788 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.8715 0.2777 -3.4808 34 1 1.4297 3.1228 1.0210 35 1 3.4510 2.2138 2.0810 36 1 2.4334 0.8494 2.6012 37 1 2.8281 4.4573 2.9558 38 1 3.8720 2.8778 4.5019 39 1 2.9444 1.4217 4.9346 40 1 1.7110 4.2576 8.1682 41 1 2.9903 4.0490 10.2601 42 1 7.4023 2.1290 9.6095 43 1 7.4846 1.4697 11.2606 44 1 6.4714 0.6722 10.0331 45 1 5.8779 1.6190 8.2477 46 1 4.5954 1.8292 6.1578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583639314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:37 Heat of formation + Delta-G solvation = -70.647647 kcal Electronic energy + Delta-G solvation = -24595.279213 eV Core-core repulsion = 20997.136749 eV Total energy + Delta-G solvation = -3598.142464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36671 -38.30690 -37.06705 -35.64860 -32.63233 -31.77471 -31.06211 -30.49702 -29.63454 -28.96114 -26.61067 -24.61836 -23.19166 -23.00888 -22.33243 -21.33034 -19.10935 -18.56492 -17.69113 -16.81824 -16.59918 -16.43886 -15.57785 -15.27276 -15.10785 -14.91938 -14.75444 -14.22182 -14.08239 -13.99848 -13.66626 -13.43819 -13.25088 -13.04366 -12.89442 -12.82758 -12.32364 -12.11795 -11.84097 -11.55802 -11.38124 -11.32244 -10.96033 -10.84251 -10.75384 -10.60548 -10.40744 -10.21209 -9.98028 -9.64193 -9.44982 -9.40764 -9.29333 -8.82057 -8.50249 -7.52885 -7.31394 -6.05743 -4.11130 0.97436 0.98311 1.19079 2.05732 2.93358 3.27262 3.34597 3.36767 3.38766 4.36018 4.40040 4.44041 4.50710 4.62407 4.62595 4.68393 4.87788 4.92474 5.00886 5.15654 5.21557 5.24662 5.25994 5.36465 5.44804 5.60604 5.71039 5.75560 5.95017 6.01101 6.05250 6.24774 6.35662 6.50638 6.64208 6.81818 7.17512 7.18768 7.25385 7.44638 7.70734 7.72018 7.76876 7.80477 8.23121 8.33601 8.62558 8.98241 9.53937 11.00158 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.027778 B = 0.001896 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.752741 B =14762.989784 C =15054.468178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.679 5.679 14 C 0.035 3.965 15 C 0.113 3.887 16 H 0.115 0.885 17 O -0.549 6.549 18 C 0.027 3.973 19 O -0.300 6.300 20 C 0.134 3.866 21 C -0.135 4.135 22 C -0.059 4.059 23 C -0.128 4.128 24 S -0.126 6.126 25 C -0.143 4.143 26 C -0.090 4.090 27 C -0.192 4.192 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.013 0.987 31 H 0.087 0.913 32 H 0.008 0.992 33 H 0.261 0.739 34 H 0.339 0.661 35 H 0.023 0.977 36 H 0.073 0.927 37 H 0.370 0.630 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.125 0.875 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.045 2.387 24.054 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.312 5.312 14 C -0.096 4.096 15 C 0.053 3.947 16 H 0.132 0.868 17 O -0.353 6.353 18 C -0.049 4.049 19 O -0.213 6.213 20 C 0.086 3.914 21 C -0.155 4.155 22 C -0.082 4.082 23 C -0.240 4.240 24 S 0.114 5.886 25 C -0.312 4.312 26 C -0.114 4.114 27 C -0.213 4.213 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.105 0.895 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.158 0.842 35 H 0.041 0.959 36 H 0.091 0.909 37 H 0.216 0.784 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.143 0.857 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.752 2.212 25.306 26.045 hybrid contribution 1.678 0.116 -2.584 3.083 sum 7.430 2.328 22.722 24.019 Atomic orbital electron populations 1.21454 0.97419 0.97460 1.01436 1.21444 0.95137 0.98228 0.99375 1.19158 0.92811 0.91514 0.85647 0.98345 1.21186 1.31657 1.11998 0.90248 0.92180 1.24894 0.95040 0.94999 0.98982 1.69880 1.36692 1.22720 1.23542 0.86556 0.79313 0.79306 0.82610 1.20817 1.21252 1.19783 1.60627 1.47990 1.16828 1.05715 1.22457 0.94838 0.99772 0.92499 1.22071 1.00415 0.82209 0.89999 0.86766 1.86654 1.35199 1.23707 1.89704 1.23724 0.98561 0.97310 0.85275 1.86203 1.48763 1.70087 1.16237 1.19115 0.90745 0.94704 0.86836 1.20400 1.02020 1.02888 0.90182 1.20558 0.92734 0.97221 0.97678 1.21509 1.00363 1.05262 0.96866 1.85389 1.25201 1.65117 1.12878 1.23654 0.99003 1.02131 1.06375 1.20940 0.99688 0.99158 0.91604 1.21204 0.96605 1.04043 0.99419 0.93940 0.92422 0.96752 0.89488 0.97336 0.92948 0.84186 0.95890 0.90880 0.78360 0.91741 0.90954 0.84425 0.84831 0.89779 0.87441 0.89761 0.85685 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.32 16 2 C -0.10 -2.45 5.59 -26.73 -0.15 -2.60 16 3 C 0.22 5.20 2.30 -68.87 -0.16 5.04 16 4 H 0.00 -0.03 7.72 -51.93 -0.40 -0.43 16 5 C -0.51 -13.49 7.26 -34.44 -0.25 -13.74 16 6 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 7 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 8 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.68 -13.67 5.64 -107.95 -0.61 -14.28 16 14 C 0.04 0.56 5.24 -3.82 -0.02 0.54 16 15 C 0.11 1.54 3.52 -26.73 -0.09 1.45 16 16 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 17 O -0.55 -7.90 12.57 -40.10 -0.50 -8.40 16 18 C 0.03 0.31 4.37 37.16 0.16 0.47 16 19 O -0.30 -3.84 10.10 -24.63 -0.25 -4.09 16 20 C 0.13 1.55 6.69 -39.23 -0.26 1.29 16 21 C -0.13 -1.41 9.98 -39.46 -0.39 -1.81 16 22 C -0.06 -0.57 9.79 -39.38 -0.39 -0.95 16 23 C -0.13 -1.24 6.11 -39.07 -0.24 -1.48 16 24 S -0.13 -1.04 22.56 -107.50 -2.43 -3.47 16 25 C -0.14 -0.76 9.15 101.05 0.92 0.16 16 26 C -0.09 -0.85 9.36 -39.38 -0.37 -1.22 16 27 C -0.19 -1.97 9.03 -39.46 -0.36 -2.33 16 28 H 0.04 0.90 7.74 -51.93 -0.40 0.49 16 29 H 0.06 1.38 7.07 -51.93 -0.37 1.02 16 30 H 0.01 0.28 8.14 -51.92 -0.42 -0.15 16 31 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 32 H 0.01 0.18 7.59 -51.93 -0.39 -0.22 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.34 6.95 7.49 -39.29 -0.29 6.65 16 35 H 0.02 0.37 7.95 -51.93 -0.41 -0.05 16 36 H 0.07 1.17 7.60 -51.93 -0.39 0.77 16 37 H 0.37 4.14 9.04 45.56 0.41 4.55 16 38 H 0.06 0.64 7.65 -51.93 -0.40 0.25 16 39 H 0.07 0.74 7.67 -51.93 -0.40 0.34 16 40 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.08 0.41 7.75 -51.92 -0.40 0.01 16 43 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.41 7.74 -51.92 -0.40 0.01 16 45 H 0.13 0.92 5.87 -52.48 -0.31 0.61 16 46 H 0.13 1.18 6.29 -52.48 -0.33 0.85 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -29.58 383.96 -10.18 -39.76 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.45 Total: 8.79 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.33 Total: -15.91 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.02 Total: -38.38 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.75 Total: -12.49 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -2.43 Total: -3.47 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.58 -10.18 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583639314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.891 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds