Wall clock time and date at job start Tue Mar 31 2020 16:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 115.55081 * 2 1 4 4 C 1.53076 * 117.53051 * 145.71538 * 2 1 3 5 5 C 1.52999 * 59.98338 * 107.46838 * 4 2 1 6 6 H 1.09002 * 117.49892 * 107.50008 * 5 4 2 7 7 C 1.50695 * 117.49927 * 252.49934 * 5 4 2 8 8 C 1.34513 * 125.79292 * 188.74556 * 7 5 4 9 9 C 1.41379 * 106.84396 * 179.79304 * 8 7 5 10 10 C 1.34512 * 106.83871 * 0.37040 * 9 8 7 11 11 C 1.50705 * 125.78632 * 179.89199 * 10 9 8 12 12 N 1.46492 * 109.47177 * 89.69325 * 11 10 9 13 13 C 1.34775 * 120.00010 * 179.97438 * 12 11 10 14 14 O 1.21615 * 120.00130 * 0.02562 * 13 12 11 15 15 C 1.47434 * 120.00236 * 180.02562 * 13 12 11 16 16 C 1.39227 * 120.28129 * 355.65064 * 15 13 12 17 17 C 1.38218 * 120.09305 * 180.02562 * 16 15 13 18 18 C 1.38830 * 120.67414 * 359.95913 * 17 16 15 19 19 C 1.37600 * 120.56991 * 0.02562 * 18 17 16 20 20 C 1.40695 * 119.88238 * 0.02562 * 19 18 17 21 21 C 1.40891 * 120.32972 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00526 * 215.49198 * 21 20 19 23 23 C 1.40278 * 119.99699 * 35.49416 * 21 20 19 24 24 N 1.30634 * 119.99883 * 9.12611 * 23 21 20 25 25 Si 1.86798 * 119.99999 * 189.12898 * 23 21 20 26 26 H 1.48499 * 109.47453 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47257 * 120.00059 * 25 23 21 28 28 H 1.48504 * 109.47297 * 240.00026 * 25 23 21 29 29 O 1.34298 * 108.42108 * 359.62807 * 10 9 8 30 30 H 1.08995 * 109.47687 * 205.67078 * 1 2 3 31 31 H 1.09005 * 109.47084 * 325.66764 * 1 2 3 32 32 H 1.08999 * 109.47316 * 85.66624 * 1 2 3 33 33 H 1.08994 * 117.51472 * 359.97438 * 4 2 1 34 34 H 1.08998 * 117.49005 * 214.95515 * 4 2 1 35 35 H 1.08000 * 126.57900 * 0.04566 * 8 7 5 36 36 H 1.08006 * 126.57826 * 180.24347 * 9 8 7 37 37 H 1.08997 * 109.47300 * 329.68704 * 11 10 9 38 38 H 1.09007 * 109.46765 * 209.69310 * 11 10 9 39 39 H 0.97002 * 120.00419 * 359.97438 * 12 11 10 40 40 H 1.07999 * 119.95174 * 0.02562 * 16 15 13 41 41 H 1.07993 * 119.66398 * 179.97438 * 17 16 15 42 42 H 1.07997 * 119.71312 * 180.02562 * 18 17 16 43 43 H 1.08001 * 120.05332 * 179.72467 * 19 18 17 44 44 H 0.96999 * 119.99600 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2375 -1.1216 0.7646 5 6 2.2364 -1.1208 -0.7653 6 1 3.1711 -0.8746 -1.2692 7 6 1.3719 -2.1404 -1.4611 8 6 1.3684 -2.3994 -2.7810 9 6 0.4164 -3.4225 -2.9951 10 6 -0.1108 -3.7218 -1.7943 11 6 -1.1728 -4.7582 -1.5317 12 7 -0.5379 -6.0505 -1.2618 13 6 -1.2971 -7.1322 -0.9975 14 8 -2.5093 -7.0356 -0.9834 15 6 -0.6581 -8.4327 -0.7253 16 6 0.7235 -8.5714 -0.8284 17 6 1.3184 -9.7925 -0.5729 18 6 0.5518 -10.8920 -0.2110 19 6 -0.8157 -10.7858 -0.1006 20 6 -1.4461 -9.5543 -0.3563 21 6 -2.8456 -9.4351 -0.2466 22 1 -3.3874 -8.7904 -0.9227 23 6 -3.5354 -10.1538 0.7410 24 7 -2.8718 -10.7910 1.6685 25 14 -5.4028 -10.1999 0.7299 26 1 -5.9109 -9.4032 -0.4156 27 1 -5.8625 -11.6058 0.5984 28 1 -5.9197 -9.6267 1.9987 29 8 0.4740 -2.9443 -0.8685 30 1 -0.3634 -0.9262 0.4451 31 1 -0.3633 0.8487 0.5796 32 1 -0.3634 0.0777 -1.0247 33 1 1.6131 -1.8594 1.2682 34 1 3.1728 -0.8755 1.2674 35 1 1.9788 -1.9208 -3.5325 36 1 0.1601 -3.8753 -3.9416 37 1 -1.8187 -4.8461 -2.4053 38 1 -1.7676 -4.4584 -0.6688 39 1 0.4290 -6.1277 -1.2734 40 1 1.3311 -7.7236 -1.1085 41 1 2.3905 -9.8924 -0.6554 42 1 1.0329 -11.8387 -0.0145 43 1 -1.4044 -11.6476 0.1772 44 1 -3.3488 -11.2877 2.3516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601003655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:19 Heat of formation + Delta-G solvation = 19.923376 kcal Electronic energy + Delta-G solvation = -26306.106216 eV Core-core repulsion = 22576.447255 eV Total energy + Delta-G solvation = -3729.658961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.71561 -38.93951 -38.01112 -36.82126 -34.43542 -33.61014 -32.99117 -30.75248 -29.86723 -29.38044 -28.61900 -26.22373 -25.16990 -22.67496 -21.98385 -21.95327 -20.99263 -20.71650 -19.85160 -19.46372 -17.66281 -16.86813 -16.48071 -15.97693 -15.79385 -15.26112 -14.92169 -14.67384 -14.33956 -14.07880 -13.62400 -13.43895 -13.27954 -13.14320 -12.93783 -12.73910 -12.70928 -12.55282 -12.16830 -12.03581 -11.84618 -11.72024 -11.54221 -11.13796 -11.00842 -10.85704 -10.63903 -10.52151 -10.32923 -10.11142 -9.90025 -9.67007 -9.27439 -8.58987 -8.46424 -8.18269 -7.59367 -7.34021 -6.79721 -4.39346 1.51994 2.34380 2.45614 2.74115 2.80534 3.11536 3.20871 3.22788 3.55042 3.98924 4.05934 4.14670 4.21162 4.38605 4.54711 4.68512 4.71698 4.99005 5.01328 5.06824 5.37982 5.48364 5.51817 5.55827 5.61558 5.65985 5.67035 5.76671 5.82065 5.96961 5.98905 5.99970 6.11272 6.15677 6.29216 6.45433 6.60117 6.94344 6.99777 7.13198 7.14410 7.22521 7.45797 7.61789 7.87746 7.98403 8.17870 8.33385 8.67857 8.83121 8.90404 9.36485 10.16279 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015359 B = 0.002852 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.565187 B = 9816.885412 C =10636.970755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.139 4.139 3 H 0.112 0.888 4 C -0.167 4.167 5 C -0.083 4.083 6 H 0.133 0.867 7 C 0.026 3.974 8 C -0.208 4.208 9 C -0.189 4.189 10 C -0.023 4.023 11 C 0.207 3.793 12 N -0.746 5.746 13 C 0.567 3.433 14 O -0.538 6.538 15 C -0.260 4.260 16 C -0.056 4.056 17 C -0.244 4.244 18 C -0.096 4.096 19 C -0.146 4.146 20 C 0.147 3.853 21 C -0.421 4.421 22 H 0.111 0.889 23 C 0.068 3.932 24 N -0.793 5.793 25 Si 0.916 3.084 26 H -0.256 1.256 27 H -0.274 1.274 28 H -0.274 1.274 29 O -0.166 6.166 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.395 0.605 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 16.358 -4.110 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.157 4.157 3 H 0.130 0.870 4 C -0.203 4.203 5 C -0.101 4.101 6 H 0.151 0.849 7 C -0.025 4.025 8 C -0.227 4.227 9 C -0.209 4.209 10 C -0.073 4.073 11 C 0.083 3.917 12 N -0.403 5.403 13 C 0.362 3.638 14 O -0.416 6.416 15 C -0.265 4.265 16 C -0.075 4.075 17 C -0.263 4.263 18 C -0.115 4.115 19 C -0.165 4.165 20 C 0.143 3.857 21 C -0.449 4.449 22 H 0.129 0.871 23 C -0.150 4.150 24 N -0.418 5.418 25 Si 0.740 3.260 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.199 1.199 29 O -0.062 6.062 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.230 0.770 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.134 0.866 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.258 16.280 -3.570 18.178 hybrid contribution 0.039 -0.074 -0.049 0.097 sum 7.297 16.206 -3.619 18.137 Atomic orbital electron populations 1.21391 0.92335 1.02478 1.02140 1.22516 0.96049 0.94082 1.03059 0.87011 1.23227 1.03074 1.01548 0.92493 1.20606 0.98720 0.96484 0.94301 0.84926 1.21281 0.94129 0.95509 0.91589 1.21454 1.03810 1.02083 0.95327 1.21636 0.99958 1.00735 0.98552 1.22491 1.00283 0.97302 0.87225 1.19433 0.89924 0.79494 1.02842 1.46101 1.10213 1.07828 1.76128 1.18430 0.86442 0.83408 0.75561 1.90664 1.13908 1.85201 1.51837 1.19408 0.92667 0.92698 1.21730 1.20655 0.93399 0.95945 0.97537 1.20288 0.97527 0.94297 1.14215 1.20805 0.94549 0.96838 0.99270 1.21330 0.93176 0.97864 1.04124 1.17486 0.93133 0.89010 0.86092 1.20341 0.92230 1.19886 1.12478 0.87120 1.26157 1.01627 0.92605 0.94589 1.69730 1.38509 1.23429 1.10176 0.86117 0.81698 0.78604 0.79551 1.17956 1.19898 1.19947 1.83967 1.43437 1.41228 1.37584 0.91883 0.91954 0.92139 0.87873 0.87971 0.83569 0.83224 0.88918 0.90477 0.77023 0.89300 0.89078 0.89047 0.86632 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.15 37.16 0.34 -0.80 16 2 C -0.14 -1.12 6.41 -90.58 -0.58 -1.70 16 3 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.17 -1.43 9.82 -26.69 -0.26 -1.69 16 5 C -0.08 -0.74 6.23 -91.77 -0.57 -1.32 16 6 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 7 C 0.03 0.30 5.89 -35.63 -0.21 0.09 16 8 C -0.21 -2.35 10.81 -39.70 -0.43 -2.78 16 9 C -0.19 -2.34 10.81 -39.70 -0.43 -2.77 16 10 C -0.02 -0.32 6.69 -35.62 -0.24 -0.56 16 11 C 0.21 3.23 6.20 -5.20 -0.03 3.20 16 12 N -0.75 -13.57 5.50 -62.56 -0.34 -13.91 16 13 C 0.57 13.11 7.73 -12.52 -0.10 13.02 16 14 O -0.54 -13.96 13.52 5.26 0.07 -13.89 16 15 C -0.26 -6.37 5.92 -104.37 -0.62 -6.99 16 16 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 17 C -0.24 -5.22 10.03 -39.37 -0.39 -5.61 16 18 C -0.10 -2.16 10.01 -39.60 -0.40 -2.56 16 19 C -0.15 -3.70 8.61 -38.89 -0.33 -4.04 16 20 C 0.15 3.95 5.49 -106.55 -0.58 3.36 16 21 C -0.42 -11.56 7.77 -37.81 -0.29 -11.86 16 22 H 0.11 3.15 5.74 -52.49 -0.30 2.85 16 23 C 0.07 1.76 5.25 -17.29 -0.09 1.67 16 24 N -0.79 -20.61 11.24 55.56 0.62 -19.99 16 25 Si 0.92 19.66 29.57 -169.99 -5.03 14.63 16 26 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 28 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 29 O -0.17 -2.31 9.63 5.72 0.06 -2.25 16 30 H 0.06 0.67 7.27 -51.93 -0.38 0.29 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.06 7.88 -51.93 -0.41 0.65 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.15 1.64 8.06 -52.48 -0.42 1.21 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 39 H 0.40 6.54 6.51 -40.82 -0.27 6.28 16 40 H 0.09 1.61 6.42 -52.49 -0.34 1.28 16 41 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.12 2.99 6.71 -52.49 -0.35 2.64 16 44 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -30.06 371.17 -10.45 -40.51 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -5.83 Total: 12.23 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -5.60 Total: -22.93 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.28 Total: -33.90 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.13 Total: -16.14 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.06 -10.45 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601003655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.438 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds