Wall clock time and date at job start Tue Mar 31 2020 14:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46764 * 2 1 4 4 N 1.46500 * 109.46596 * 179.97438 * 3 2 1 5 5 C 1.46501 * 119.99849 * 83.60473 * 4 3 2 6 6 C 1.53004 * 109.47304 * 87.14476 * 5 4 3 7 7 C 1.52997 * 109.47393 * 177.25586 * 6 5 4 8 8 C 1.53000 * 109.46938 * 297.25521 * 6 5 4 9 9 S 1.65597 * 120.00398 * 263.59996 * 4 3 2 10 10 O 1.42100 * 106.40038 * 15.47529 * 9 4 3 11 11 O 1.42099 * 106.40604 * 148.38951 * 9 4 3 12 12 C 1.76194 * 107.22110 * 261.93394 * 9 4 3 13 13 C 1.37642 * 120.13050 * 246.67088 * 12 9 4 14 14 C 1.38612 * 120.25164 * 179.97438 * 13 12 9 15 15 C 1.38659 * 120.49827 * 0.02562 * 14 13 12 16 16 C 1.37587 * 120.25118 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.12948 * 66.39114 * 12 9 4 18 18 C 1.41397 * 120.24399 * 359.97438 * 17 12 9 19 19 H 1.08006 * 119.99781 * 34.55057 * 18 17 12 20 20 C 1.39941 * 120.00337 * 214.55204 * 18 17 12 21 21 N 1.30826 * 119.99814 * 6.35912 * 20 18 17 22 22 Si 1.86801 * 120.00286 * 186.36052 * 20 18 17 23 23 H 1.48503 * 109.47101 * 95.03304 * 22 20 18 24 24 H 1.48497 * 109.47417 * 215.03235 * 22 20 18 25 25 H 1.48503 * 109.46979 * 335.03130 * 22 20 18 26 26 H 1.09002 * 109.46960 * 299.99673 * 1 2 3 27 27 H 1.08992 * 109.47172 * 60.00500 * 1 2 3 28 28 H 1.09000 * 109.46817 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46979 * 239.99458 * 2 1 3 30 30 H 1.09004 * 109.47162 * 119.99901 * 2 1 3 31 31 H 1.09002 * 109.47115 * 60.00421 * 3 2 1 32 32 H 1.08992 * 109.46868 * 299.99686 * 3 2 1 33 33 H 1.09001 * 109.47326 * 207.14431 * 5 4 3 34 34 H 1.08997 * 109.47563 * 327.14575 * 5 4 3 35 35 H 1.09000 * 109.47223 * 57.25290 * 6 5 4 36 36 H 1.09000 * 109.47399 * 64.95993 * 7 6 5 37 37 H 1.08996 * 109.47038 * 184.96169 * 7 6 5 38 38 H 1.08999 * 109.46960 * 304.96435 * 7 6 5 39 39 H 1.08997 * 109.47072 * 187.00131 * 8 6 5 40 40 H 1.08998 * 109.47520 * 307.00586 * 8 6 5 41 41 H 1.08999 * 109.47173 * 67.00348 * 8 6 5 42 42 H 1.08002 * 119.86942 * 359.97438 * 13 12 9 43 43 H 1.08002 * 119.74702 * 179.97438 * 14 13 12 44 44 H 1.07998 * 119.87056 * 180.02562 * 15 14 13 45 45 H 1.08005 * 120.13033 * 179.97438 * 16 15 14 46 46 H 0.97000 * 119.99859 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2379 1.3010 -1.2599 6 6 4.4310 2.6794 -1.8952 7 6 5.2555 2.5396 -3.1764 8 6 3.0654 3.2821 -2.2307 9 16 4.3324 1.6025 1.4261 10 8 3.3949 1.3532 2.4644 11 8 5.5385 0.8665 1.2748 12 6 4.7978 3.2957 1.5718 13 6 6.1258 3.6540 1.5214 14 6 6.4946 4.9853 1.6353 15 6 5.5329 5.9702 1.8016 16 6 4.1996 5.6350 1.8558 17 6 3.8130 4.2873 1.7343 18 6 2.4452 3.9318 1.7810 19 1 2.1447 3.0002 2.2375 20 6 1.4809 4.7869 1.2359 21 7 1.8511 5.8530 0.5741 22 14 -0.3350 4.4063 1.4532 23 1 -0.8583 5.1455 2.6301 24 1 -1.0773 4.8235 0.2366 25 1 -0.5130 2.9474 1.6658 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9562 -0.8900 33 1 5.2115 0.8509 -1.0656 34 1 3.6723 0.6637 -1.9396 35 1 4.9541 3.3317 -1.1959 36 1 4.6934 1.9601 -3.9088 37 1 5.4679 3.5289 -3.5815 38 1 6.1925 2.0300 -2.9518 39 1 3.2040 4.2049 -2.7940 40 1 2.4926 2.5737 -2.8292 41 1 2.5265 3.4971 -1.3080 42 1 6.8832 2.8950 1.3927 43 1 7.5391 5.2573 1.5951 44 1 5.8317 7.0044 1.8888 45 1 3.4522 6.4038 1.9857 46 1 1.1827 6.4455 0.1960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601324752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:34 Heat of formation + Delta-G solvation = -77.622346 kcal Electronic energy + Delta-G solvation = -28417.117658 eV Core-core repulsion = 24818.672748 eV Total energy + Delta-G solvation = -3598.444910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -37.74884 -37.36475 -36.39888 -34.88653 -34.31543 -33.83785 -31.74289 -30.22195 -29.57593 -27.06196 -26.41971 -25.47136 -24.05524 -21.66618 -21.19396 -20.97715 -19.91817 -17.97834 -17.60639 -17.01249 -16.09357 -15.69518 -15.38702 -14.52627 -14.37840 -14.34886 -14.04554 -13.89943 -13.32701 -13.18295 -12.94105 -12.75732 -12.50903 -12.07755 -12.00495 -11.91534 -11.71227 -11.59563 -11.41194 -11.30804 -11.24155 -11.19907 -11.12868 -11.06471 -10.84122 -10.72563 -10.64734 -10.46107 -10.28774 -10.13806 -9.90903 -9.79765 -9.45080 -9.18343 -8.29241 -7.99017 -7.54269 -7.01026 -4.78219 1.53536 2.32632 2.70691 2.95783 2.99736 3.06831 3.75813 3.87758 4.40257 4.75056 5.15365 5.24839 5.31157 5.35709 5.39022 5.47457 5.53583 5.62945 5.73174 5.90979 5.98797 6.02081 6.03401 6.12629 6.16273 6.19956 6.22518 6.24496 6.27763 6.35503 6.38333 6.46414 6.54785 6.69433 6.76844 6.81070 6.87718 6.96820 6.97762 7.05777 7.32134 7.36388 7.51089 7.70277 7.78730 7.94473 8.35364 8.53930 8.64407 9.93081 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.008791 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.161785 B = 3184.368851 C = 4209.122598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.110 3.890 4 N -0.986 5.986 5 C 0.128 3.872 6 C -0.120 4.120 7 C -0.143 4.143 8 C -0.143 4.143 9 S 2.702 3.298 10 O -0.973 6.973 11 O -0.998 6.998 12 C -0.767 4.767 13 C -0.007 4.007 14 C -0.243 4.243 15 C -0.078 4.078 16 C -0.151 4.151 17 C 0.200 3.800 18 C -0.484 4.484 19 H 0.116 0.884 20 C 0.084 3.916 21 N -0.783 5.783 22 Si 0.895 3.105 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.248 1.248 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 -4.207 -6.092 7.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.015 4.015 4 N -0.820 5.820 5 C 0.001 3.999 6 C -0.140 4.140 7 C -0.201 4.201 8 C -0.200 4.200 9 S 2.800 3.200 10 O -0.963 6.963 11 O -0.989 6.989 12 C -0.862 4.862 13 C -0.027 4.027 14 C -0.263 4.263 15 C -0.097 4.097 16 C -0.171 4.171 17 C 0.195 3.805 18 C -0.513 4.513 19 H 0.134 0.866 20 C -0.136 4.136 21 N -0.407 5.407 22 Si 0.718 3.282 23 H -0.190 1.190 24 H -0.197 1.197 25 H -0.171 1.171 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.139 0.861 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.552 -4.735 -5.663 7.543 hybrid contribution -0.672 1.005 -0.325 1.252 sum -2.224 -3.731 -5.988 7.397 Atomic orbital electron populations 1.21711 0.95774 1.01246 1.02066 1.22003 0.95778 0.98645 1.01995 1.21789 0.78671 0.95700 1.05333 1.57311 1.14407 1.88424 1.21862 1.21318 0.96636 0.96395 0.85512 1.21603 0.97354 0.97700 0.97305 1.21775 0.99574 1.01411 0.97303 1.21874 0.96553 0.99237 1.02330 1.01074 0.72005 0.74616 0.72258 1.93465 1.62888 1.85908 1.54058 1.93426 1.47257 1.71720 1.86473 1.30002 1.00970 1.22407 1.32806 1.20249 0.93619 0.95805 0.92997 1.20512 0.97412 0.93214 1.15149 1.20914 0.94101 0.97109 0.97554 1.21487 0.94194 0.97298 1.04132 1.16988 0.91256 0.90466 0.81784 1.20439 0.90762 1.07023 1.33053 0.86622 1.25888 1.01654 0.93513 0.92566 1.69775 1.36856 1.10320 1.23714 0.86471 0.81260 0.81300 0.79132 1.19007 1.19749 1.17103 0.92284 0.92876 0.92975 0.92275 0.91791 0.87539 0.90520 0.89986 0.90948 0.89923 0.93134 0.92843 0.92853 0.93627 0.93995 0.90273 0.87537 0.88763 0.88904 0.86123 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.14 -2.19 6.25 -26.73 -0.17 -2.35 16 3 C 0.11 1.93 4.12 -4.04 -0.02 1.91 16 4 N -0.99 -18.23 2.62 -114.38 -0.30 -18.53 16 5 C 0.13 2.03 5.22 -4.04 -0.02 2.01 16 6 C -0.12 -1.93 3.14 -90.62 -0.28 -2.21 16 7 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 8 C -0.14 -2.33 7.78 37.16 0.29 -2.04 16 9 S 2.70 59.41 5.09 -107.50 -0.55 58.87 16 10 O -0.97 -23.32 14.53 -57.18 -0.83 -24.15 16 11 O -1.00 -22.84 15.73 -57.18 -0.90 -23.74 16 12 C -0.77 -17.92 5.41 -38.87 -0.21 -18.13 16 13 C -0.01 -0.15 9.54 -39.66 -0.38 -0.53 16 14 C -0.24 -5.20 10.05 -39.29 -0.39 -5.59 16 15 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 16 C -0.15 -3.63 8.62 -38.88 -0.34 -3.96 16 17 C 0.20 4.87 5.49 -106.82 -0.59 4.29 16 18 C -0.48 -11.48 6.30 -37.74 -0.24 -11.72 16 19 H 0.12 2.81 4.20 -52.48 -0.22 2.59 16 20 C 0.08 1.86 5.30 -17.34 -0.09 1.77 16 21 N -0.78 -17.67 11.05 55.55 0.61 -17.06 16 22 Si 0.90 16.98 29.20 -169.99 -4.96 12.01 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 25 H -0.25 -4.56 7.11 56.52 0.40 -4.16 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.11 2.10 4.01 -51.93 -0.21 1.90 16 32 H 0.08 1.24 5.43 -51.93 -0.28 0.96 16 33 H 0.08 1.32 7.07 -51.93 -0.37 0.95 16 34 H 0.07 0.97 8.01 -51.93 -0.42 0.56 16 35 H 0.08 1.58 7.57 -51.93 -0.39 1.18 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.59 7.98 -51.93 -0.41 0.17 16 41 H 0.08 1.49 6.23 -51.93 -0.32 1.17 16 42 H 0.11 2.23 7.32 -52.49 -0.38 1.84 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 45 H 0.12 2.93 6.55 -52.48 -0.34 2.59 16 46 H 0.28 5.90 8.30 -40.82 -0.34 5.56 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -26.73 367.85 -10.64 -37.37 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -7.13 Total: 11.50 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: -2.12 Total: -41.82 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.31 Total: -35.59 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -1.73 Total: -47.88 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -4.96 Total: 12.01 kcal Atomic # 16 Polarization: 59.41 SS G_CDS: -0.55 Total: 58.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.73 -10.64 -37.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601324752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.252 kcal (2) G-P(sol) polarization free energy of solvation -26.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds