Wall clock time and date at job start Tue Mar 31 2020 14:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46764 * 2 1 4 4 N 1.46500 * 109.46596 * 179.97438 * 3 2 1 5 5 C 1.46501 * 119.99849 * 83.60473 * 4 3 2 6 6 C 1.53004 * 109.47304 * 87.14476 * 5 4 3 7 7 C 1.52997 * 109.47393 * 177.25586 * 6 5 4 8 8 C 1.53000 * 109.46938 * 297.25521 * 6 5 4 9 9 S 1.65597 * 120.00398 * 263.59996 * 4 3 2 10 10 O 1.42100 * 106.40038 * 15.47529 * 9 4 3 11 11 O 1.42099 * 106.40604 * 148.38951 * 9 4 3 12 12 C 1.76194 * 107.22110 * 261.93394 * 9 4 3 13 13 C 1.37642 * 120.13050 * 246.67088 * 12 9 4 14 14 C 1.38612 * 120.25164 * 179.97438 * 13 12 9 15 15 C 1.38659 * 120.49827 * 0.02562 * 14 13 12 16 16 C 1.37587 * 120.25118 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.12948 * 66.39114 * 12 9 4 18 18 C 1.41397 * 120.24399 * 359.97438 * 17 12 9 19 19 H 1.08006 * 119.99781 * 34.55057 * 18 17 12 20 20 C 1.39941 * 120.00337 * 214.55204 * 18 17 12 21 21 N 1.30826 * 119.99814 * 6.35912 * 20 18 17 22 22 Si 1.86801 * 120.00286 * 186.36052 * 20 18 17 23 23 H 1.48503 * 109.47101 * 95.03304 * 22 20 18 24 24 H 1.48497 * 109.47417 * 215.03235 * 22 20 18 25 25 H 1.48503 * 109.46979 * 335.03130 * 22 20 18 26 26 H 1.09002 * 109.46960 * 299.99673 * 1 2 3 27 27 H 1.08992 * 109.47172 * 60.00500 * 1 2 3 28 28 H 1.09000 * 109.46817 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46979 * 239.99458 * 2 1 3 30 30 H 1.09004 * 109.47162 * 119.99901 * 2 1 3 31 31 H 1.09002 * 109.47115 * 60.00421 * 3 2 1 32 32 H 1.08992 * 109.46868 * 299.99686 * 3 2 1 33 33 H 1.09001 * 109.47326 * 207.14431 * 5 4 3 34 34 H 1.08997 * 109.47563 * 327.14575 * 5 4 3 35 35 H 1.09000 * 109.47223 * 57.25290 * 6 5 4 36 36 H 1.09000 * 109.47399 * 64.95993 * 7 6 5 37 37 H 1.08996 * 109.47038 * 184.96169 * 7 6 5 38 38 H 1.08999 * 109.46960 * 304.96435 * 7 6 5 39 39 H 1.08997 * 109.47072 * 187.00131 * 8 6 5 40 40 H 1.08998 * 109.47520 * 307.00586 * 8 6 5 41 41 H 1.08999 * 109.47173 * 67.00348 * 8 6 5 42 42 H 1.08002 * 119.86942 * 359.97438 * 13 12 9 43 43 H 1.08002 * 119.74702 * 179.97438 * 14 13 12 44 44 H 1.07998 * 119.87056 * 180.02562 * 15 14 13 45 45 H 1.08005 * 120.13033 * 179.97438 * 16 15 14 46 46 H 0.97000 * 119.99859 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2379 1.3010 -1.2599 6 6 4.4310 2.6794 -1.8952 7 6 5.2555 2.5396 -3.1764 8 6 3.0654 3.2821 -2.2307 9 16 4.3324 1.6025 1.4261 10 8 3.3949 1.3532 2.4644 11 8 5.5385 0.8665 1.2748 12 6 4.7978 3.2957 1.5718 13 6 6.1258 3.6540 1.5214 14 6 6.4946 4.9853 1.6353 15 6 5.5329 5.9702 1.8016 16 6 4.1996 5.6350 1.8558 17 6 3.8130 4.2873 1.7343 18 6 2.4452 3.9318 1.7810 19 1 2.1447 3.0002 2.2375 20 6 1.4809 4.7869 1.2359 21 7 1.8511 5.8530 0.5741 22 14 -0.3350 4.4063 1.4532 23 1 -0.8583 5.1455 2.6301 24 1 -1.0773 4.8235 0.2366 25 1 -0.5130 2.9474 1.6658 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9562 -0.8900 33 1 5.2115 0.8509 -1.0656 34 1 3.6723 0.6637 -1.9396 35 1 4.9541 3.3317 -1.1959 36 1 4.6934 1.9601 -3.9088 37 1 5.4679 3.5289 -3.5815 38 1 6.1925 2.0300 -2.9518 39 1 3.2040 4.2049 -2.7940 40 1 2.4926 2.5737 -2.8292 41 1 2.5265 3.4971 -1.3080 42 1 6.8832 2.8950 1.3927 43 1 7.5391 5.2573 1.5951 44 1 5.8317 7.0044 1.8888 45 1 3.4522 6.4038 1.9857 46 1 1.1827 6.4455 0.1960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601324752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:33 Heat of formation + Delta-G solvation = -91.066785 kcal Electronic energy + Delta-G solvation = -28417.700652 eV Core-core repulsion = 24818.672748 eV Total energy + Delta-G solvation = -3599.027904 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.42067 -38.78260 -38.17007 -36.67633 -35.66976 -35.47848 -33.00468 -31.97223 -31.33999 -28.34503 -27.63134 -27.15840 -25.36070 -23.40492 -22.91286 -22.27185 -21.21412 -19.65550 -19.33173 -18.61496 -17.72870 -17.26458 -17.03949 -16.05806 -15.96976 -15.70655 -15.34688 -15.22176 -15.02437 -14.89755 -14.42892 -14.16039 -13.89537 -13.69568 -13.43119 -13.18190 -13.07178 -12.97065 -12.93752 -12.89113 -12.85676 -12.78131 -12.58516 -12.52199 -12.32485 -12.24725 -12.00100 -11.90473 -11.59638 -11.58051 -11.42938 -11.24805 -11.06789 -10.92647 -9.84622 -9.61579 -9.32621 -8.70333 -6.56401 -0.14837 0.55995 0.99564 1.39267 1.46265 1.51809 2.18368 2.29709 2.68260 3.02037 3.50713 3.71139 3.92301 4.07994 4.15649 4.25841 4.30489 4.33017 4.36998 4.50402 4.56614 4.69005 4.75221 4.77256 4.89099 4.91336 4.95107 5.01354 5.04783 5.10208 5.14137 5.19666 5.21594 5.26595 5.31923 5.37131 5.44993 5.52273 5.56894 5.57699 5.66067 5.72380 5.89799 5.99666 6.01535 6.18325 6.56245 6.78598 6.86758 8.25823 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.008791 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.161785 B = 3184.368851 C = 4209.122598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.106 3.894 4 N -0.980 5.980 5 C 0.122 3.878 6 C -0.118 4.118 7 C -0.137 4.137 8 C -0.138 4.138 9 S 2.712 3.288 10 O -0.999 6.999 11 O -1.011 7.011 12 C -0.782 4.782 13 C -0.019 4.019 14 C -0.245 4.245 15 C -0.078 4.078 16 C -0.177 4.177 17 C 0.177 3.823 18 C -0.498 4.498 19 H 0.105 0.895 20 C 0.061 3.939 21 N -0.801 5.801 22 Si 0.940 3.060 23 H -0.268 1.268 24 H -0.256 1.256 25 H -0.242 1.242 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.109 0.891 46 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 -5.050 -8.079 9.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C -0.019 4.019 4 N -0.816 5.816 5 C -0.003 4.003 6 C -0.138 4.138 7 C -0.195 4.195 8 C -0.195 4.195 9 S 2.809 3.191 10 O -0.990 6.990 11 O -1.002 7.002 12 C -0.876 4.876 13 C -0.039 4.039 14 C -0.265 4.265 15 C -0.097 4.097 16 C -0.197 4.197 17 C 0.173 3.827 18 C -0.526 4.526 19 H 0.123 0.877 20 C -0.158 4.158 21 N -0.425 5.425 22 Si 0.761 3.239 23 H -0.193 1.193 24 H -0.180 1.180 25 H -0.165 1.165 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.135 0.865 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.127 0.873 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.097 -5.564 -7.648 9.687 hybrid contribution -0.436 1.294 0.266 1.391 sum -2.533 -4.270 -7.382 8.896 Atomic orbital electron populations 1.21721 0.94234 1.02676 1.02056 1.21998 0.97133 0.96755 1.02333 1.21887 0.77842 0.97403 1.04765 1.57080 1.14875 1.88033 1.21602 1.21583 0.96949 0.96930 0.84814 1.21546 0.97342 0.96943 0.97973 1.21726 0.99669 1.01974 0.96100 1.21806 0.96666 0.99822 1.01174 1.00634 0.71643 0.74013 0.72781 1.93421 1.63443 1.86116 1.55975 1.93395 1.48019 1.71816 1.86936 1.30267 1.01400 1.23055 1.32892 1.20527 0.93623 0.96760 0.93010 1.20863 0.98884 0.92699 1.14019 1.21222 0.93425 0.98707 0.96301 1.21515 0.95032 0.97090 1.06086 1.17246 0.91990 0.90996 0.82488 1.20429 0.91120 1.07171 1.33895 0.87747 1.26413 1.04526 0.93071 0.91800 1.69802 1.38193 1.10783 1.23739 0.85790 0.77259 0.81402 0.79462 1.19315 1.18030 1.16535 0.93821 0.91375 0.90862 0.89887 0.93473 0.90119 0.89100 0.90150 0.87382 0.93696 0.90723 0.92922 0.92218 0.94126 0.91257 0.93192 0.86519 0.85753 0.86249 0.87265 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.91 71.98 0.71 -2.88 16 2 C -0.14 -4.06 6.25 30.60 0.19 -3.86 16 3 C 0.11 3.61 4.12 86.38 0.36 3.97 16 4 N -0.98 -35.77 2.62 -515.79 -1.35 -37.13 16 5 C 0.12 3.68 5.22 86.38 0.45 4.13 16 6 C -0.12 -3.66 3.14 -10.79 -0.03 -3.69 16 7 C -0.14 -3.28 9.19 71.98 0.66 -2.62 16 8 C -0.14 -4.29 7.78 71.98 0.56 -3.73 16 9 S 2.71 121.40 5.09 -56.49 -0.29 121.11 16 10 O -1.00 -49.44 14.53 -128.00 -1.86 -51.30 16 11 O -1.01 -46.58 15.73 -128.00 -2.01 -48.59 16 12 C -0.78 -37.47 5.41 22.73 0.12 -37.34 16 13 C -0.02 -0.88 9.54 22.22 0.21 -0.67 16 14 C -0.24 -10.34 10.05 22.46 0.23 -10.11 16 15 C -0.08 -3.41 10.02 22.22 0.22 -3.18 16 16 C -0.18 -8.72 8.62 22.73 0.20 -8.53 16 17 C 0.18 8.93 5.49 -21.29 -0.12 8.81 16 18 C -0.50 -24.35 6.30 23.46 0.15 -24.21 16 19 H 0.10 5.28 4.20 -2.91 -0.01 5.27 16 20 C 0.06 2.73 5.30 85.26 0.45 3.18 16 21 N -0.80 -36.74 11.05 21.83 0.24 -36.50 16 22 Si 0.94 34.55 29.20 68.60 2.00 36.55 16 23 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 24 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 25 H -0.24 -8.63 7.11 99.48 0.71 -7.92 16 26 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.94 8.06 -2.39 -0.02 1.92 16 30 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 31 H 0.08 3.23 4.01 -2.39 -0.01 3.22 16 32 H 0.09 2.80 5.43 -2.39 -0.01 2.79 16 33 H 0.08 2.46 7.07 -2.39 -0.02 2.45 16 34 H 0.11 2.50 8.01 -2.39 -0.02 2.48 16 35 H 0.04 1.73 7.57 -2.39 -0.02 1.72 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.74 7.98 -2.39 -0.02 1.72 16 41 H 0.05 1.86 6.23 -2.39 -0.01 1.85 16 42 H 0.12 4.89 7.32 -2.91 -0.02 4.87 16 43 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 44 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 45 H 0.11 5.50 6.55 -2.91 -0.02 5.48 16 46 H 0.29 12.16 8.30 -92.71 -0.77 11.39 16 Total: -1.00 -59.07 367.85 2.06 -57.01 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: 0.97 Total: 39.57 kcal Atomic # 6 Polarization: -85.09 SS G_CDS: 4.36 Total: -80.73 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -1.11 Total: -73.63 kcal Atomic # 8 Polarization: -96.02 SS G_CDS: -3.87 Total: -99.89 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.00 Total: 36.55 kcal Atomic # 16 Polarization: 121.40 SS G_CDS: -0.29 Total: 121.11 kcal Total: -59.07 2.06 -57.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601324752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.061 kcal (2) G-P(sol) polarization free energy of solvation -59.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds