Wall clock time and date at job start Tue Mar 31 2020 14:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46803 * 2 1 4 4 H 1.09000 * 109.47502 * 55.00080 * 3 2 1 5 5 C 1.53004 * 109.46895 * 294.99748 * 3 2 1 6 6 C 1.53001 * 109.46852 * 174.99802 * 3 2 1 7 7 C 1.52995 * 109.47388 * 294.59901 * 6 3 2 8 8 H 1.09006 * 109.46902 * 54.15649 * 7 6 3 9 9 C 1.53002 * 109.47046 * 174.15662 * 7 6 3 10 10 N 1.46504 * 109.47009 * 294.15832 * 7 6 3 11 11 S 1.65600 * 119.99672 * 146.38760 * 10 7 6 12 12 O 1.42098 * 106.40549 * 310.73594 * 11 10 7 13 13 O 1.42107 * 106.40017 * 177.81612 * 11 10 7 14 14 C 1.76203 * 107.21841 * 64.27799 * 11 10 7 15 15 C 1.37635 * 120.12857 * 244.80248 * 14 11 10 16 16 C 1.38615 * 120.24916 * 179.97438 * 15 14 11 17 17 C 1.38662 * 120.50170 * 0.02562 * 16 15 14 18 18 C 1.37602 * 120.24420 * 0.02562 * 17 16 15 19 19 C 1.40704 * 120.12401 * 64.80551 * 14 11 10 20 20 C 1.41393 * 120.24663 * 0.04486 * 19 14 11 21 21 H 1.07998 * 119.99908 * 329.72605 * 20 19 14 22 22 C 1.39945 * 119.99985 * 149.72780 * 20 19 14 23 23 N 1.30830 * 119.99871 * 348.96191 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 168.96219 * 22 20 19 25 25 H 1.48506 * 109.46795 * 60.00101 * 24 22 20 26 26 H 1.48499 * 109.46913 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47069 * 300.00200 * 24 22 20 28 28 H 1.08999 * 109.47247 * 60.00352 * 1 2 3 29 29 H 1.09005 * 109.46940 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47550 * 300.00039 * 1 2 3 31 31 H 1.08995 * 109.47188 * 239.99561 * 2 1 3 32 32 H 1.09000 * 109.47009 * 119.99160 * 2 1 3 33 33 H 1.09000 * 109.47058 * 66.40216 * 5 3 2 34 34 H 1.09000 * 109.47039 * 186.40461 * 5 3 2 35 35 H 1.08999 * 109.46994 * 306.40235 * 5 3 2 36 36 H 1.09006 * 109.46933 * 174.59443 * 6 3 2 37 37 H 1.08999 * 109.46995 * 54.60447 * 6 3 2 38 38 H 1.08996 * 109.47272 * 299.99639 * 9 7 6 39 39 H 1.08997 * 109.47117 * 60.00301 * 9 7 6 40 40 H 1.09007 * 109.46709 * 180.02562 * 9 7 6 41 41 H 0.96994 * 120.00120 * 326.39143 * 10 7 6 42 42 H 1.07994 * 119.87564 * 0.26218 * 15 14 11 43 43 H 1.08000 * 119.75075 * 179.97438 * 16 15 14 44 44 H 1.07990 * 119.87544 * 179.97438 * 17 16 15 45 45 H 1.08001 * 120.11963 * 180.02562 * 18 17 16 46 46 H 0.96997 * 119.99910 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 6 3.9646 0.8829 1.4917 8 1 3.5066 -0.0965 1.6301 9 6 5.4871 0.7486 1.5621 10 7 3.5051 1.7903 2.5461 11 16 3.0209 1.1825 4.0084 12 8 2.1082 0.1313 3.7238 13 8 2.6888 2.3021 4.8182 14 6 4.4296 0.4304 4.7530 15 6 4.4511 -0.9277 4.9754 16 6 5.5582 -1.5221 5.5604 17 6 6.6551 -0.7579 5.9285 18 6 6.6552 0.6017 5.7166 19 6 5.5370 1.2159 5.1225 20 6 5.5258 2.6121 4.8998 21 1 4.9715 3.0219 4.0684 22 6 6.2331 3.4630 5.7567 23 7 6.7229 3.0018 6.8787 24 14 6.4779 5.2573 5.2983 25 1 5.1548 5.9154 5.1509 26 1 7.2534 5.9393 6.3654 27 1 7.2194 5.3435 4.0146 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 0.5504 2.2270 -1.3442 34 1 2.0935 3.1142 -1.3578 35 1 1.9732 1.5256 -2.1516 36 1 3.9360 2.4647 0.0295 37 1 3.9950 0.8255 -0.6616 38 1 5.8289 0.0735 0.7776 39 1 5.9450 1.7280 1.4237 40 1 5.7718 0.3481 2.5351 41 1 3.4845 2.7470 2.3877 42 1 3.6040 -1.5332 4.6888 43 1 5.5663 -2.5884 5.7316 44 1 7.5122 -1.2314 6.3840 45 1 7.5108 1.1949 6.0037 46 1 7.2134 3.5914 7.4725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601358874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:56 Heat of formation + Delta-G solvation = -90.671835 kcal Electronic energy + Delta-G solvation = -27287.454676 eV Core-core repulsion = 23688.443898 eV Total energy + Delta-G solvation = -3599.010778 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -38.07305 -37.57867 -36.14588 -34.79944 -34.76262 -33.85191 -30.43233 -30.18165 -29.60533 -29.27711 -26.64447 -25.51444 -23.39762 -21.64026 -21.33193 -21.02728 -19.65239 -18.67575 -17.68760 -16.86724 -16.17765 -15.45791 -15.37127 -15.04332 -14.46106 -14.39664 -14.25069 -13.58864 -13.35713 -13.22888 -13.11230 -12.77865 -12.70572 -12.40730 -12.20145 -11.98410 -11.80580 -11.52787 -11.43823 -11.36735 -11.27560 -11.15870 -11.05924 -11.03136 -10.94702 -10.79542 -10.62552 -10.51208 -10.46989 -10.29036 -9.97458 -9.89380 -9.44696 -9.38612 -8.71811 -8.00489 -7.57805 -7.00866 -4.74331 1.59250 2.35321 2.74742 2.96870 2.99674 3.12874 3.78757 3.98472 4.43009 4.74501 4.86245 4.88683 5.00221 5.28406 5.32166 5.44957 5.53748 5.57760 5.61160 5.67861 5.72371 5.82662 5.88870 5.93036 6.02328 6.05562 6.08034 6.16663 6.23160 6.24124 6.28815 6.30800 6.40839 6.51639 6.56189 6.68919 6.78832 6.82553 6.95524 7.09561 7.31983 7.49951 7.60194 7.70972 7.81231 7.90779 8.29604 8.52431 8.65787 9.92974 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.005288 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.394960 B = 5293.826691 C = 6240.874145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.096 4.096 4 H 0.074 0.926 5 C -0.146 4.146 6 C -0.116 4.116 7 C 0.152 3.848 8 H 0.088 0.912 9 C -0.175 4.175 10 N -1.115 6.115 11 S 2.699 3.301 12 O -0.997 6.997 13 O -0.967 6.967 14 C -0.771 4.771 15 C -0.004 4.004 16 C -0.249 4.249 17 C -0.077 4.077 18 C -0.157 4.157 19 C 0.191 3.809 20 C -0.447 4.447 21 H 0.087 0.913 22 C 0.081 3.919 23 N -0.779 5.779 24 Si 0.912 3.088 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.260 1.260 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.409 0.591 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.122 0.878 46 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 -1.103 -12.009 12.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.114 4.114 4 H 0.093 0.907 5 C -0.203 4.203 6 C -0.155 4.155 7 C 0.045 3.955 8 H 0.106 0.894 9 C -0.233 4.233 10 N -0.871 5.871 11 S 2.796 3.204 12 O -0.987 6.987 13 O -0.958 6.958 14 C -0.866 4.866 15 C -0.024 4.024 16 C -0.270 4.270 17 C -0.096 4.096 18 C -0.177 4.177 19 C 0.187 3.813 20 C -0.476 4.476 21 H 0.105 0.895 22 C -0.140 4.140 23 N -0.402 5.402 24 Si 0.736 3.264 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.185 1.185 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.243 0.757 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.140 0.860 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.307 -1.153 -11.440 11.964 hybrid contribution 1.026 0.919 0.082 1.380 sum -2.281 -0.234 -11.358 11.588 Atomic orbital electron populations 1.21784 0.96267 1.01310 1.01500 1.21676 0.95860 0.96437 1.02293 1.21186 0.95481 0.96591 0.98157 0.90738 1.21872 1.01058 1.00113 0.97284 1.21916 0.95493 1.01719 0.96378 1.20729 0.94477 0.93227 0.87103 0.89384 1.22368 0.95455 1.02270 1.03250 1.55735 1.84361 1.16598 1.30445 1.01123 0.74136 0.73083 0.72089 1.93444 1.62048 1.58267 1.84985 1.93544 1.83773 1.52057 1.66406 1.29905 1.19817 1.04252 1.32661 1.20246 0.96217 0.92593 0.93308 1.20481 0.96712 0.97830 1.11942 1.20894 0.96645 0.94697 0.97345 1.21467 0.99292 0.92963 1.03967 1.16951 0.87867 0.91731 0.84801 1.19789 1.25633 0.90961 1.11187 0.89532 1.25919 0.92453 1.02014 0.93571 1.69772 1.24801 1.38511 1.07155 0.86262 0.79971 0.80743 0.79458 1.18103 1.19971 1.18451 0.93125 0.93105 0.92601 0.92471 0.90680 0.92797 0.92965 0.92998 0.91372 0.91062 0.92612 0.92078 0.90645 0.75741 0.87511 0.88825 0.88914 0.86024 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.67 37.16 0.36 -1.39 16 2 C -0.13 -1.52 5.28 -26.73 -0.14 -1.66 16 3 C -0.10 -1.13 2.34 -90.62 -0.21 -1.34 16 4 H 0.07 0.99 7.64 -51.93 -0.40 0.59 16 5 C -0.15 -1.43 8.79 37.16 0.33 -1.11 16 6 C -0.12 -1.35 4.26 -26.73 -0.11 -1.47 16 7 C 0.15 2.22 2.78 -67.93 -0.19 2.03 16 8 H 0.09 1.35 5.62 -51.93 -0.29 1.06 16 9 C -0.17 -2.60 9.52 37.16 0.35 -2.24 16 10 N -1.12 -18.88 3.98 -4.89 -0.02 -18.90 16 11 S 2.70 58.20 4.94 -107.50 -0.53 57.67 16 12 O -1.00 -22.10 16.34 -57.17 -0.93 -23.04 16 13 O -0.97 -24.15 16.62 -57.17 -0.95 -25.10 16 14 C -0.77 -18.01 4.73 -38.87 -0.18 -18.19 16 15 C 0.00 -0.08 9.53 -39.66 -0.38 -0.46 16 16 C -0.25 -5.36 10.05 -39.29 -0.39 -5.76 16 17 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 18 C -0.16 -3.81 8.65 -38.87 -0.34 -4.15 16 19 C 0.19 4.73 5.07 -106.82 -0.54 4.19 16 20 C -0.45 -10.98 7.59 -37.74 -0.29 -11.26 16 21 H 0.09 1.97 5.83 -52.49 -0.31 1.67 16 22 C 0.08 1.94 5.24 -17.34 -0.09 1.85 16 23 N -0.78 -19.11 10.96 55.55 0.61 -18.50 16 24 Si 0.91 17.90 29.57 -169.99 -5.03 12.87 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 27 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 28 H 0.05 0.51 6.71 -51.93 -0.35 0.16 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.06 6.25 -51.93 -0.32 0.74 16 33 H 0.05 0.51 6.89 -51.93 -0.36 0.15 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.34 6.39 -51.92 -0.33 1.01 16 41 H 0.41 6.23 8.58 -34.47 -0.30 5.94 16 42 H 0.11 2.21 7.32 -52.49 -0.38 1.83 16 43 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.12 2.99 6.35 -52.49 -0.33 2.66 16 46 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -29.23 372.53 -10.62 -39.86 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -7.16 Total: 12.59 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: -2.23 Total: -43.06 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.59 Total: -37.40 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -1.88 Total: -48.14 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 58.20 SS G_CDS: -0.53 Total: 57.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.23 -10.62 -39.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601358874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.817 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds