Wall clock time and date at job start Tue Mar 31 2020 16:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47614 * 2 1 4 4 C 1.53001 * 109.46747 * 239.99357 * 2 1 3 5 5 C 1.52996 * 109.47001 * 174.53284 * 4 2 1 6 6 C 1.52997 * 109.47004 * 64.90476 * 5 4 2 7 7 C 1.53005 * 109.47351 * 184.90243 * 5 4 2 8 8 C 1.53002 * 109.47257 * 304.90199 * 5 4 2 9 9 N 1.46504 * 109.46991 * 120.00117 * 2 1 3 10 10 S 1.65598 * 119.99605 * 266.55849 * 9 2 1 11 11 O 1.42097 * 106.40533 * 311.68110 * 10 9 2 12 12 O 1.42108 * 106.39829 * 178.76005 * 10 9 2 13 13 C 1.76203 * 107.21616 * 65.22352 * 10 9 2 14 14 C 1.37640 * 120.12807 * 243.46133 * 13 10 9 15 15 C 1.38614 * 120.24818 * 180.32135 * 14 13 10 16 16 C 1.38651 * 120.49868 * 359.67463 * 15 14 13 17 17 C 1.37600 * 120.25231 * 359.97438 * 16 15 14 18 18 C 1.40699 * 120.13016 * 63.16224 * 13 10 9 19 19 C 1.41399 * 120.23909 * 359.97438 * 18 13 10 20 20 H 1.08000 * 120.00425 * 32.54327 * 19 18 13 21 21 C 1.39948 * 119.99731 * 212.53813 * 19 18 13 22 22 N 1.30819 * 120.00211 * 191.81261 * 21 19 18 23 23 Si 1.86806 * 119.99766 * 11.82029 * 21 19 18 24 24 H 1.48508 * 109.46864 * 266.89536 * 23 21 19 25 25 H 1.48497 * 109.47524 * 26.89826 * 23 21 19 26 26 H 1.48503 * 109.47161 * 146.90185 * 23 21 19 27 27 H 1.08999 * 109.47713 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46805 * 300.00440 * 1 2 3 29 29 H 1.08989 * 109.47049 * 59.99633 * 1 2 3 30 30 H 1.09002 * 109.47545 * 294.53514 * 4 2 1 31 31 H 1.09006 * 109.47048 * 54.54018 * 4 2 1 32 32 H 1.08996 * 109.47104 * 51.42488 * 6 5 4 33 33 H 1.09009 * 109.46966 * 171.42479 * 6 5 4 34 34 H 1.08999 * 109.46998 * 291.41667 * 6 5 4 35 35 H 1.09002 * 109.47265 * 59.99806 * 7 5 4 36 36 H 1.08998 * 109.47645 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.46756 * 300.00515 * 7 5 4 38 38 H 1.09001 * 109.47103 * 60.00312 * 8 5 4 39 39 H 1.09004 * 109.47268 * 179.97438 * 8 5 4 40 40 H 1.09001 * 109.47380 * 299.99843 * 8 5 4 41 41 H 0.96996 * 120.00086 * 86.56349 * 9 2 1 42 42 H 1.08003 * 119.87553 * 0.02562 * 14 13 10 43 43 H 1.07994 * 119.74526 * 179.69930 * 15 14 13 44 44 H 1.08001 * 119.87595 * 180.02562 * 16 15 14 45 45 H 1.07998 * 120.12523 * 180.02562 * 17 16 15 46 46 H 0.96997 * 120.00310 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5637 -0.6035 -1.3199 6 6 4.1881 -1.3469 -0.1374 7 6 4.0626 -1.2178 -2.6294 8 6 3.9643 0.8721 -1.2636 9 7 2.0183 -0.6907 1.1962 10 16 2.3754 0.1732 2.5631 11 8 3.1841 1.2653 2.1479 12 8 2.7891 -0.7732 3.5392 13 6 0.8661 0.8668 3.1509 14 6 0.7038 2.2329 3.1932 15 6 -0.4800 2.7814 3.6614 16 6 -1.5154 1.9626 4.0856 17 6 -1.3781 0.5941 4.0455 18 6 -0.1803 0.0262 3.5730 19 6 -0.0275 -1.3787 3.5276 20 1 0.9440 -1.8219 3.6897 21 6 -1.1352 -2.1952 3.2728 22 7 -1.0514 -3.4876 3.4566 23 14 -2.7336 -1.4393 2.6698 24 1 -3.6119 -1.1469 3.8311 25 1 -2.4412 -0.1791 1.9406 26 1 -3.4184 -2.3910 1.7585 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.7587 -1.7734 -1.2015 31 1 1.5989 -0.2672 -2.1365 32 1 3.7835 -2.3579 -0.0893 33 1 5.2693 -1.3940 -0.2678 34 1 3.9565 -0.8184 0.7873 35 1 3.6178 -0.6883 -3.4719 36 1 5.1482 -1.1343 -2.6796 37 1 3.7772 -2.2690 -2.6694 38 1 3.6089 1.3097 -0.3307 39 1 5.0499 0.9560 -1.3135 40 1 3.5195 1.4017 -2.1061 41 1 2.1325 -1.6538 1.1875 42 1 1.5037 2.8801 2.8648 43 1 -0.5967 3.8544 3.6956 44 1 -2.4336 2.4007 4.4481 45 1 -2.1861 -0.0417 4.3760 46 1 -1.8192 -4.0535 3.2803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601434124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:26 Heat of formation + Delta-G solvation = -75.263894 kcal Electronic energy + Delta-G solvation = -28039.542889 eV Core-core repulsion = 24441.200249 eV Total energy + Delta-G solvation = -3598.342640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -38.66072 -37.92144 -36.28028 -34.92530 -34.47518 -33.82960 -30.75017 -30.23714 -29.89293 -27.15407 -26.89943 -26.29553 -25.41661 -22.09494 -21.24804 -21.08610 -18.89398 -18.54603 -17.76104 -17.12446 -16.38156 -15.51239 -15.49146 -14.83416 -14.51087 -14.25849 -14.15878 -13.95133 -13.61273 -13.49736 -12.90442 -12.86417 -12.59097 -12.45502 -12.30137 -12.05167 -11.86658 -11.55002 -11.52212 -11.41497 -11.33413 -11.28925 -11.22940 -11.04099 -10.95365 -10.89839 -10.69427 -10.43571 -10.39096 -10.28136 -10.00518 -9.99488 -9.54134 -9.33463 -8.60475 -8.21641 -7.84111 -7.19021 -4.89583 1.50275 2.05128 2.49652 2.92421 3.01501 3.10798 3.74278 3.90029 4.23536 4.63289 4.83182 4.96723 4.99459 5.08866 5.40010 5.47408 5.52185 5.60416 5.70420 5.78747 5.79721 5.83794 5.87565 5.94907 5.97618 6.00911 6.03772 6.12688 6.17625 6.23416 6.29896 6.31385 6.37988 6.44537 6.53842 6.62181 6.65932 6.76848 6.84515 6.93542 7.05664 7.22066 7.40455 7.53024 7.70883 7.81063 8.15695 8.29081 8.51554 9.79380 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.006127 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.124267 B = 4568.823747 C = 5223.048299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.153 3.847 3 H 0.091 0.909 4 C -0.111 4.111 5 C -0.067 4.067 6 C -0.148 4.148 7 C -0.139 4.139 8 C -0.153 4.153 9 N -1.103 6.103 10 S 2.705 3.295 11 O -0.994 6.994 12 O -0.972 6.972 13 C -0.768 4.768 14 C 0.015 3.985 15 C -0.257 4.257 16 C -0.045 4.045 17 C -0.235 4.235 18 C 0.169 3.831 19 C -0.454 4.454 20 H 0.125 0.875 21 C 0.091 3.909 22 N -0.783 5.783 23 Si 0.904 3.096 24 H -0.269 1.269 25 H -0.236 1.236 26 H -0.287 1.287 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.416 0.584 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 3.635 -10.095 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.046 3.954 3 H 0.108 0.892 4 C -0.150 4.150 5 C -0.067 4.067 6 C -0.205 4.205 7 C -0.197 4.197 8 C -0.211 4.211 9 N -0.861 5.861 10 S 2.800 3.200 11 O -0.984 6.984 12 O -0.963 6.963 13 C -0.862 4.862 14 C -0.004 4.004 15 C -0.277 4.277 16 C -0.063 4.063 17 C -0.254 4.254 18 C 0.164 3.836 19 C -0.481 4.481 20 H 0.143 0.857 21 C -0.132 4.132 22 N -0.405 5.405 23 Si 0.730 3.270 24 H -0.195 1.195 25 H -0.159 1.159 26 H -0.215 1.215 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.251 0.749 42 H 0.131 0.869 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.123 0.877 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.944 3.593 -9.742 10.793 hybrid contribution -1.775 -0.171 -0.050 1.784 sum 1.169 3.422 -9.792 10.439 Atomic orbital electron populations 1.22428 0.95681 1.02930 1.02580 1.20743 0.93619 0.96498 0.84551 0.89157 1.21931 0.94613 1.01282 0.97154 1.20494 0.95032 0.95977 0.95180 1.22193 0.99615 1.00055 0.98676 1.21879 1.00662 1.00426 0.96695 1.22061 1.01002 0.95130 1.02858 1.55670 1.83560 1.19959 1.26895 1.01008 0.74020 0.72691 0.72239 1.93452 1.67119 1.55102 1.82736 1.93530 1.82109 1.62155 1.58483 1.29952 1.23750 1.02359 1.30104 1.20404 0.95823 0.92869 0.91342 1.20499 0.95851 0.97795 1.13564 1.20831 0.96792 0.93831 0.94886 1.21216 0.99929 0.94534 1.09723 1.17061 0.89415 0.92470 0.84701 1.20263 0.99402 0.89368 1.39106 0.85729 1.26184 1.00390 0.94567 0.92022 1.69647 1.33029 1.05516 1.32267 0.86467 0.80272 0.80571 0.79719 1.19532 1.15864 1.21476 0.92045 0.90727 0.92635 0.91203 0.91075 0.92634 0.93440 0.91866 0.92997 0.92967 0.92898 0.90429 0.93110 0.93147 0.74914 0.86867 0.88151 0.88355 0.87737 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 9.52 37.16 0.35 -2.43 16 2 C 0.15 2.30 2.57 -67.93 -0.17 2.12 16 3 H 0.09 1.37 5.39 -51.93 -0.28 1.09 16 4 C -0.11 -1.36 4.00 -26.73 -0.11 -1.47 16 5 C -0.07 -0.82 0.80 -154.51 -0.12 -0.94 16 6 C -0.15 -2.02 7.09 37.16 0.26 -1.75 16 7 C -0.14 -1.43 8.46 37.16 0.31 -1.12 16 8 C -0.15 -1.95 7.99 37.16 0.30 -1.66 16 9 N -1.10 -19.11 2.81 -4.89 -0.01 -19.12 16 10 S 2.70 56.64 4.26 -107.50 -0.46 56.18 16 11 O -0.99 -20.92 15.25 -57.17 -0.87 -21.79 16 12 O -0.97 -23.65 15.83 -57.17 -0.91 -24.55 16 13 C -0.77 -17.10 4.77 -38.87 -0.19 -17.28 16 14 C 0.02 0.32 9.53 -39.66 -0.38 -0.06 16 15 C -0.26 -5.07 10.05 -39.29 -0.39 -5.46 16 16 C -0.04 -0.91 10.02 -39.66 -0.40 -1.30 16 17 C -0.23 -5.30 6.99 -38.88 -0.27 -5.57 16 18 C 0.17 4.00 4.61 -106.83 -0.49 3.51 16 19 C -0.45 -11.31 8.61 -37.74 -0.32 -11.64 16 20 H 0.13 3.36 5.82 -52.49 -0.31 3.05 16 21 C 0.09 2.18 5.47 -17.34 -0.09 2.08 16 22 N -0.78 -19.12 13.93 55.55 0.77 -18.35 16 23 Si 0.90 18.86 24.43 -169.99 -4.15 14.71 16 24 H -0.27 -5.56 6.71 56.52 0.38 -5.18 16 25 H -0.24 -4.89 6.67 56.52 0.38 -4.51 16 26 H -0.29 -5.80 7.11 56.52 0.40 -5.40 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.36 6.38 -51.93 -0.33 1.03 16 29 H 0.05 0.73 8.14 -51.94 -0.42 0.30 16 30 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.71 7.85 -51.93 -0.41 0.30 16 33 H 0.05 0.60 8.13 -51.92 -0.42 0.18 16 34 H 0.06 0.99 4.80 -51.93 -0.25 0.74 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.16 5.36 -51.93 -0.28 0.88 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.42 6.86 7.70 -34.47 -0.27 6.59 16 42 H 0.11 2.15 7.33 -52.48 -0.38 1.76 16 43 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 44 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.10 2.32 4.62 -52.49 -0.24 2.08 16 46 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -28.14 358.55 -8.94 -37.08 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -7.00 Total: 13.40 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: -1.72 Total: -42.97 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.76 Total: -37.47 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -1.78 Total: -46.34 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.15 Total: 14.71 kcal Atomic # 16 Polarization: 56.64 SS G_CDS: -0.46 Total: 56.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.14 -8.94 -37.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.185 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds