Wall clock time and date at job start Tue Mar 31 2020 16:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47129 * 2 1 4 4 C 1.53007 * 109.46846 * 119.99828 * 2 1 3 5 5 C 1.52998 * 109.46973 * 186.31670 * 4 2 1 6 6 C 1.53000 * 109.47365 * 53.99905 * 5 4 2 7 7 C 1.53001 * 109.46770 * 174.00191 * 5 4 2 8 8 C 1.53001 * 109.47205 * 293.99750 * 5 4 2 9 9 N 1.46499 * 109.47531 * 239.99594 * 2 1 3 10 10 S 1.65606 * 119.99699 * 93.49565 * 9 2 1 11 11 O 1.42097 * 106.40297 * 311.96291 * 10 9 2 12 12 O 1.42106 * 106.40036 * 179.04540 * 10 9 2 13 13 C 1.76198 * 107.21380 * 65.50726 * 10 9 2 14 14 C 1.37639 * 120.12643 * 267.39098 * 13 10 9 15 15 C 1.38617 * 120.24836 * 180.02562 * 14 13 10 16 16 C 1.38659 * 120.49778 * 0.02562 * 15 14 13 17 17 C 1.37595 * 120.25095 * 359.97438 * 16 15 14 18 18 C 1.40694 * 120.12853 * 87.42067 * 13 10 9 19 19 C 1.41396 * 120.24481 * 359.95372 * 18 13 10 20 20 H 1.08001 * 119.99829 * 323.90092 * 19 18 13 21 21 C 1.39943 * 120.00142 * 143.89878 * 19 18 13 22 22 N 1.30820 * 120.00258 * 1.10739 * 21 19 18 23 23 Si 1.86804 * 119.99905 * 181.10228 * 21 19 18 24 24 H 1.48497 * 109.47065 * 60.00429 * 23 21 19 25 25 H 1.48505 * 109.46631 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47143 * 300.00064 * 23 21 19 27 27 H 1.09005 * 109.46608 * 59.99972 * 1 2 3 28 28 H 1.09000 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47351 * 300.00235 * 1 2 3 30 30 H 1.08998 * 109.46783 * 306.31652 * 4 2 1 31 31 H 1.09006 * 109.46932 * 66.31722 * 4 2 1 32 32 H 1.08998 * 109.46923 * 62.87824 * 6 5 4 33 33 H 1.09000 * 109.47415 * 182.87761 * 6 5 4 34 34 H 1.09004 * 109.47188 * 302.87933 * 6 5 4 35 35 H 1.08991 * 109.47359 * 59.99644 * 7 5 4 36 36 H 1.08999 * 109.46608 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.46787 * 299.99706 * 7 5 4 38 38 H 1.09001 * 109.46914 * 69.00918 * 8 5 4 39 39 H 1.09001 * 109.47167 * 189.01168 * 8 5 4 40 40 H 1.09006 * 109.46970 * 309.01230 * 8 5 4 41 41 H 0.97002 * 120.00490 * 273.50728 * 9 2 1 42 42 H 1.07996 * 119.87441 * 0.02562 * 14 13 10 43 43 H 1.07999 * 119.74617 * 180.28206 * 15 14 13 44 44 H 1.08006 * 119.86978 * 179.97438 * 16 15 14 45 45 H 1.08000 * 120.12706 * 180.02562 * 17 16 15 46 46 H 0.96993 * 120.00595 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5617 -0.5853 1.3312 6 6 3.9464 0.8937 1.2573 7 6 4.0559 -1.1753 2.6536 8 6 4.2046 -1.3384 0.1649 9 7 2.0185 -0.6907 -1.1961 10 16 2.3769 0.1733 -2.5627 11 8 1.2730 1.0381 -2.7918 12 8 2.8396 -0.7673 -3.5222 13 6 3.7497 1.2093 -2.1795 14 6 3.5418 2.4943 -1.7322 15 6 4.6199 3.3117 -1.4305 16 6 5.9180 2.8465 -1.5757 17 6 6.1495 1.5654 -2.0213 18 6 5.0626 0.7265 -2.3302 19 6 5.2883 -0.5919 -2.7886 20 1 4.6213 -1.3881 -2.4928 21 6 6.3760 -0.8650 -3.6257 22 7 7.1965 0.0952 -3.9666 23 14 6.6566 -2.6009 -4.2562 24 1 5.4774 -3.0371 -5.0464 25 1 7.8658 -2.6251 -5.1180 26 1 6.8493 -3.5202 -3.1061 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.5872 -0.2768 2.1356 31 1 1.7719 -1.7764 1.1946 32 1 3.5307 1.4206 2.1162 33 1 5.0323 0.9876 1.2641 34 1 3.5501 1.3267 0.3388 35 1 3.7819 -2.2289 2.7063 36 1 5.1400 -1.0780 2.7121 37 1 3.5979 -0.6388 3.4845 38 1 3.9814 -0.8215 -0.7685 39 1 5.2843 -1.3782 0.3090 40 1 3.8059 -2.3521 0.1231 41 1 2.1317 -1.6540 -1.1877 42 1 2.5349 2.8670 -1.6158 43 1 4.4473 4.3170 -1.0757 44 1 6.7505 3.4922 -1.3381 45 1 7.1614 1.2050 -2.1333 46 1 7.9506 -0.0941 -4.5465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601434125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:32 Heat of formation + Delta-G solvation = -86.036023 kcal Electronic energy + Delta-G solvation = -28546.244459 eV Core-core repulsion = 24947.434705 eV Total energy + Delta-G solvation = -3598.809754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.93027 -39.15294 -37.98292 -36.56276 -35.58340 -35.51289 -32.03943 -31.34506 -31.18142 -28.02605 -27.81904 -27.37595 -27.12995 -23.37062 -22.91009 -22.32259 -20.32422 -19.69929 -19.31396 -18.52736 -17.59854 -17.15110 -16.87490 -16.00288 -15.88100 -15.74831 -15.20987 -15.04986 -14.85300 -14.78692 -14.39868 -14.09375 -13.85623 -13.51724 -13.36409 -13.14492 -13.09193 -12.96966 -12.84735 -12.79525 -12.75626 -12.70878 -12.45506 -12.41200 -12.21888 -12.12730 -12.09352 -11.97979 -11.60359 -11.36990 -11.20426 -11.16283 -11.07691 -10.78209 -9.95954 -9.71205 -9.21312 -8.64578 -6.46684 -0.10110 0.59393 1.05329 1.36554 1.45519 1.55856 2.21792 2.47362 2.77177 3.06874 3.59304 3.77050 3.86275 4.03620 4.11640 4.34752 4.39271 4.46203 4.50714 4.57089 4.66888 4.77694 4.87011 4.87954 4.92157 5.03679 5.06085 5.07893 5.11358 5.16006 5.23113 5.26808 5.34215 5.38979 5.41079 5.45594 5.50767 5.61641 5.64755 5.72538 5.77612 5.84475 5.97266 6.08356 6.20644 6.35027 6.60515 6.84155 6.92782 8.29491 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.006608 C = 0.006568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.405640 B = 4236.416131 C = 4262.299397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 H 0.077 0.923 4 C -0.103 4.103 5 C -0.064 4.064 6 C -0.151 4.151 7 C -0.134 4.134 8 C -0.158 4.158 9 N -1.105 6.105 10 S 2.701 3.299 11 O -1.012 7.012 12 O -0.992 6.992 13 C -0.770 4.770 14 C -0.012 4.012 15 C -0.237 4.237 16 C -0.077 4.077 17 C -0.174 4.174 18 C 0.177 3.823 19 C -0.455 4.455 20 H 0.096 0.904 21 C 0.036 3.964 22 N -0.826 5.826 23 Si 0.964 3.036 24 H -0.270 1.270 25 H -0.267 1.267 26 H -0.247 1.247 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.056 0.944 41 H 0.420 0.580 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.109 0.891 46 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -2.524 11.923 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.036 3.964 3 H 0.095 0.905 4 C -0.142 4.142 5 C -0.064 4.064 6 C -0.208 4.208 7 C -0.191 4.191 8 C -0.216 4.216 9 N -0.866 5.866 10 S 2.798 3.202 11 O -1.002 7.002 12 O -0.982 6.982 13 C -0.865 4.865 14 C -0.031 4.031 15 C -0.257 4.257 16 C -0.096 4.096 17 C -0.194 4.194 18 C 0.172 3.828 19 C -0.485 4.485 20 H 0.113 0.887 21 C -0.179 4.179 22 N -0.452 5.452 23 Si 0.786 3.214 24 H -0.195 1.195 25 H -0.191 1.191 26 H -0.171 1.171 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.256 0.744 42 H 0.136 0.864 43 H 0.141 0.859 44 H 0.133 0.867 45 H 0.127 0.873 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.696 -2.372 10.978 13.076 hybrid contribution 1.303 -0.481 -0.457 1.462 sum -5.393 -2.853 10.521 12.162 Atomic orbital electron populations 1.22338 0.94451 1.03248 1.02849 1.21035 0.94418 0.96302 0.84614 0.90466 1.21925 0.93981 1.01684 0.96598 1.20478 0.95428 0.95060 0.95397 1.22082 1.00341 0.96094 1.02317 1.21823 1.00350 1.00942 0.96011 1.22402 0.99085 1.00088 1.00011 1.55661 1.82254 1.19465 1.29183 1.00929 0.73152 0.73227 0.72886 1.93428 1.53091 1.68610 1.85063 1.93544 1.82130 1.62759 1.59756 1.30094 1.13810 1.10451 1.32136 1.20432 0.98446 0.91714 0.92552 1.20817 0.92338 1.00424 1.12141 1.21200 0.96866 0.95209 0.96293 1.21572 0.99225 0.95167 1.03460 1.17130 0.89347 0.92563 0.83769 1.20115 1.09055 0.95041 1.24256 0.88664 1.26618 0.93653 1.02490 0.95128 1.69798 1.12369 1.34939 1.28082 0.85491 0.78279 0.78066 0.79614 1.19468 1.19117 1.17077 0.93478 0.91044 0.89471 0.88556 0.89931 0.91813 0.94985 0.92006 0.92044 0.94008 0.91541 0.91232 0.95220 0.92474 0.74391 0.86361 0.85851 0.86711 0.87317 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 9.52 71.98 0.69 -3.12 16 2 C 0.14 3.69 2.42 44.99 0.11 3.80 16 3 H 0.08 2.19 5.25 -2.39 -0.01 2.18 16 4 C -0.10 -2.13 4.00 30.60 0.12 -2.01 16 5 C -0.06 -1.62 0.80 -52.18 -0.04 -1.66 16 6 C -0.15 -4.40 8.05 71.98 0.58 -3.82 16 7 C -0.13 -2.85 8.46 71.98 0.61 -2.24 16 8 C -0.16 -5.02 6.77 71.98 0.49 -4.54 16 9 N -1.10 -34.80 3.06 -169.38 -0.52 -35.32 16 10 S 2.70 114.22 4.95 -56.49 -0.28 113.94 16 11 O -1.01 -45.11 16.31 -128.00 -2.09 -47.20 16 12 O -0.99 -48.85 14.84 -128.00 -1.90 -50.75 16 13 C -0.77 -34.57 4.20 22.73 0.10 -34.48 16 14 C -0.01 -0.49 7.35 22.22 0.16 -0.32 16 15 C -0.24 -9.34 10.05 22.46 0.23 -9.12 16 16 C -0.08 -3.25 10.02 22.22 0.22 -3.03 16 17 C -0.17 -8.45 8.64 22.73 0.20 -8.25 16 18 C 0.18 8.69 4.74 -21.29 -0.10 8.59 16 19 C -0.46 -23.01 6.15 23.46 0.14 -22.87 16 20 H 0.10 4.64 5.14 -2.91 -0.01 4.62 16 21 C 0.04 1.80 5.39 85.26 0.46 2.26 16 22 N -0.83 -42.21 10.81 21.83 0.24 -41.97 16 23 Si 0.96 39.45 29.56 68.60 2.03 41.48 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 26 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 27 H 0.05 1.28 7.48 -2.38 -0.02 1.27 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.48 8.11 -2.38 -0.02 1.46 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.99 2.98 -2.38 -0.01 1.98 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 2.48 1.24 -2.39 0.00 2.48 16 39 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16 40 H 0.06 1.57 7.89 -2.38 -0.02 1.55 16 41 H 0.42 11.72 7.81 -96.74 -0.76 10.97 16 42 H 0.12 4.43 7.55 -2.91 -0.02 4.41 16 43 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 44 H 0.11 4.22 8.06 -2.91 -0.02 4.19 16 45 H 0.11 5.58 6.38 -2.91 -0.02 5.56 16 46 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 Total: -1.00 -62.76 354.91 1.68 -61.09 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: 0.24 Total: 39.54 kcal Atomic # 6 Polarization: -84.76 SS G_CDS: 3.96 Total: -80.81 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -0.28 Total: -77.29 kcal Atomic # 8 Polarization: -93.96 SS G_CDS: -3.99 Total: -97.95 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 16 Polarization: 114.22 SS G_CDS: -0.28 Total: 113.94 kcal Total: -62.76 1.68 -61.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.949 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds