Wall clock time and date at job start Tue Mar 31 2020 16:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47584 * 2 1 4 4 C 1.53005 * 109.46855 * 240.00018 * 2 1 3 5 5 C 1.50701 * 109.46742 * 65.00289 * 4 2 1 6 6 H 1.07996 * 120.00329 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00052 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00096 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00259 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47304 * 90.00027 * 9 7 5 11 11 H 1.48501 * 109.47247 * 210.00156 * 9 7 5 12 12 H 1.48499 * 109.47138 * 329.99829 * 9 7 5 13 13 C 1.53002 * 109.47483 * 120.00682 * 2 1 3 14 14 N 1.46904 * 109.46937 * 294.99714 * 13 2 1 15 15 C 1.46890 * 110.99966 * 179.97438 * 14 13 2 16 16 C 1.50702 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.38256 * 119.99963 * 269.72882 * 16 15 14 18 18 C 1.38218 * 120.00084 * 180.36635 * 17 16 15 19 19 C 1.38254 * 119.99695 * 359.86103 * 18 17 16 20 20 C 1.38212 * 120.00305 * 0.09098 * 19 18 17 21 21 C 1.50696 * 119.99840 * 179.97438 * 20 19 18 22 22 S 1.81393 * 109.47269 * 270.01836 * 21 20 19 23 23 C 1.81401 * 101.92342 * 180.02562 * 22 21 20 24 24 O 1.42100 * 108.58198 * 294.49127 * 22 21 20 25 25 O 1.42107 * 108.57605 * 65.51646 * 22 21 20 26 26 C 1.38215 * 120.00248 * 89.99932 * 16 15 14 27 27 H 1.08992 * 109.47584 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46713 * 299.99606 * 1 2 3 29 29 H 1.08995 * 109.47059 * 59.99445 * 1 2 3 30 30 H 1.09000 * 109.47468 * 184.99845 * 4 2 1 31 31 H 1.08999 * 109.47393 * 305.00105 * 4 2 1 32 32 H 0.96999 * 120.00732 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47537 * 174.99839 * 13 2 1 34 34 H 1.08998 * 109.46963 * 54.99177 * 13 2 1 35 35 H 1.00901 * 110.99903 * 56.03822 * 14 13 2 36 36 H 1.09003 * 109.47170 * 60.00175 * 15 14 13 37 37 H 1.09006 * 109.47703 * 299.99760 * 15 14 13 38 38 H 1.08001 * 120.00211 * 0.27430 * 17 16 15 39 39 H 1.07997 * 119.99848 * 179.97438 * 18 17 16 40 40 H 1.08000 * 119.99718 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.47460 * 30.02353 * 21 20 19 42 42 H 1.09001 * 109.46884 * 150.02018 * 21 20 19 43 43 H 1.09005 * 109.46953 * 60.00558 * 23 22 21 44 44 H 1.09000 * 109.47423 * 180.02562 * 23 22 21 45 45 H 1.08992 * 109.47243 * 300.00472 * 23 22 21 46 46 H 1.08000 * 119.99286 * 359.70252 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9930 -0.4015 -3.7283 8 7 2.6770 -1.5181 -3.8513 9 14 1.4995 0.5637 -5.2495 10 1 2.5651 1.5432 -5.5816 11 1 1.3127 -0.3699 -6.3892 12 1 0.2283 1.2851 -4.9872 13 6 2.0401 -0.7214 1.2491 14 7 1.6515 0.0372 2.4456 15 6 2.1249 -0.6274 3.6671 16 6 1.7090 0.1783 4.8708 17 6 2.5443 1.1624 5.3661 18 6 2.1663 1.8962 6.4747 19 6 0.9516 1.6481 7.0865 20 6 0.1161 0.6650 6.5908 21 6 -1.2076 0.3942 7.2581 22 16 -0.9894 -0.8648 8.5456 23 6 -2.6737 -1.0283 9.1993 24 8 -0.6247 -2.0896 7.9241 25 8 -0.1573 -0.3297 9.5657 26 6 0.4951 -0.0703 5.4831 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.1262 -0.7995 -1.2058 31 1 1.6053 -1.7198 -1.2953 32 1 2.9243 -1.8411 -4.7319 33 1 3.1263 -0.7996 1.2055 34 1 1.6053 -1.7199 1.2950 35 1 0.6530 0.1792 2.4753 36 1 3.2118 -0.7054 3.6404 37 1 1.6905 -1.6252 3.7296 38 1 3.4929 1.3568 4.8877 39 1 2.8189 2.6647 6.8618 40 1 0.6560 2.2218 7.9525 41 1 -1.5823 1.3133 7.7085 42 1 -1.9217 0.0356 6.5167 43 1 -3.3443 -1.3452 8.4005 44 1 -2.6831 -1.7701 9.9978 45 1 -3.0056 -0.0675 9.5925 46 1 -0.1575 -0.8388 5.0958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602527812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:45 Heat of formation + Delta-G solvation = -62.911080 kcal Electronic energy + Delta-G solvation = -24511.495289 eV Core-core repulsion = 20913.688308 eV Total energy + Delta-G solvation = -3597.806981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -39.77504 -37.35997 -36.97713 -36.38261 -34.51039 -33.16128 -32.17572 -30.76626 -30.18063 -27.74014 -26.99558 -26.15441 -24.36885 -22.44308 -22.06079 -21.01219 -19.28584 -18.95215 -17.13268 -17.01002 -16.55616 -16.41004 -16.29881 -15.81112 -15.32443 -14.91479 -14.74961 -14.25735 -13.94025 -13.78776 -13.72958 -13.52752 -13.29646 -13.04955 -12.91875 -12.68787 -12.44063 -12.35928 -12.27225 -12.05865 -11.75690 -11.56883 -11.44694 -11.38876 -11.12395 -11.08252 -10.88771 -10.72142 -10.32802 -10.19809 -9.71742 -9.20543 -9.03831 -8.96730 -8.83740 -8.31948 -8.14123 -5.96586 -3.97722 -0.56274 1.12492 1.17277 2.28859 3.18278 3.33680 3.39903 3.42910 3.51480 3.52515 4.01227 4.14452 4.27502 4.45567 4.49993 4.59626 4.74149 4.82331 4.87790 4.98754 5.11437 5.19663 5.30265 5.39091 5.44967 5.58778 5.76392 5.78608 5.82786 5.89379 6.05618 6.16915 6.24722 6.26711 6.44865 6.49059 6.56264 6.74759 6.93886 7.11008 7.17753 7.34401 7.63294 7.71208 7.87182 8.03706 8.47450 9.08625 9.65533 11.14893 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024114 B = 0.001988 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.866139 B =14083.100867 C =14496.923812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.063 3.937 14 N -0.685 5.685 15 C 0.092 3.908 16 C -0.073 4.073 17 C -0.084 4.084 18 C -0.120 4.120 19 C -0.105 4.105 20 C -0.098 4.098 21 C -0.560 4.560 22 S 2.413 3.587 23 C -0.660 4.660 24 O -0.931 6.931 25 O -0.934 6.934 26 C -0.096 4.096 27 H 0.041 0.959 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.339 0.661 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.692 3.988 28.483 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.316 5.316 15 C -0.037 4.037 16 C -0.074 4.074 17 C -0.104 4.104 18 C -0.138 4.138 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.688 4.688 22 S 2.596 3.404 23 C -0.809 4.809 24 O -0.928 6.928 25 O -0.931 6.931 26 C -0.116 4.116 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.348 3.815 28.590 30.027 hybrid contribution -1.729 0.141 -1.107 2.058 sum -10.078 3.956 27.483 29.539 Atomic orbital electron populations 1.21741 0.96740 1.00420 1.00241 1.21219 0.94836 1.00107 0.94104 0.91629 1.19115 0.96165 0.95371 0.90337 1.21233 1.34600 1.08247 0.90982 0.92581 1.25029 0.95383 0.95102 0.99114 1.69965 1.39077 1.21233 1.23370 0.86623 0.78898 0.79798 0.82840 1.20730 1.21345 1.19948 1.22180 1.00494 0.94495 0.89359 1.60647 1.19756 1.50349 1.00877 1.20935 1.01170 0.94128 0.87437 1.19885 0.94079 0.96931 0.96464 1.21212 0.99813 0.94178 0.95154 1.21162 0.96419 1.00018 0.96180 1.21075 0.94493 0.97040 0.99774 1.18753 0.93585 0.99614 0.98025 1.29287 1.03487 1.18659 1.17320 1.08273 0.78053 0.76979 0.77129 1.30327 1.25161 1.11772 1.13651 1.93618 1.80981 1.41664 1.76581 1.93600 1.63365 1.80147 1.56024 1.21033 0.96608 0.99111 0.94812 0.94015 0.95036 0.91850 0.96630 0.96732 0.93103 0.91315 0.95674 0.84271 0.89971 0.94269 0.85268 0.85436 0.85508 0.84142 0.84072 0.85232 0.85190 0.85334 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.77 37.16 0.33 -2.16 16 2 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 3 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.35 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.53 7.05 -52.49 -0.37 1.16 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.06 1.09 5.14 -3.82 -0.02 1.07 16 14 N -0.68 -10.08 6.49 -115.06 -0.75 -10.82 16 15 C 0.09 1.17 5.81 -4.98 -0.03 1.14 16 16 C -0.07 -0.87 5.39 -104.62 -0.56 -1.43 16 17 C -0.08 -0.93 9.70 -39.58 -0.38 -1.31 16 18 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 19 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 20 C -0.10 -0.93 5.14 -104.63 -0.54 -1.47 16 21 C -0.56 -2.99 5.93 36.00 0.21 -2.77 16 22 S 2.41 16.23 5.34 -107.50 -0.57 15.66 16 23 C -0.66 -1.73 10.62 101.05 1.07 -0.66 16 24 O -0.93 -10.23 18.10 -57.83 -1.05 -11.27 16 25 O -0.93 -9.63 18.10 -57.83 -1.05 -10.68 16 26 C -0.10 -1.05 9.36 -39.58 -0.37 -1.42 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 29 H 0.06 1.28 6.95 -51.93 -0.36 0.91 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.34 4.77 6.97 -39.29 -0.27 4.50 16 36 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.04 0.49 8.09 -51.93 -0.42 0.07 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.14 0.33 8.09 -51.92 -0.42 -0.09 16 42 H 0.14 0.43 8.09 -51.92 -0.42 0.01 16 43 H 0.13 0.12 8.14 -51.92 -0.42 -0.30 16 44 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 45 H 0.13 0.07 8.14 -51.93 -0.42 -0.35 16 46 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -36.74 392.46 -11.26 -48.00 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.66 Total: -0.75 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -1.82 Total: -26.48 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.01 Total: -37.12 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -2.09 Total: -21.95 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 16.23 SS G_CDS: -0.57 Total: 15.66 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.74 -11.26 -48.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602527812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.910 kcal (2) G-P(sol) polarization free energy of solvation -36.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.48 seconds