Wall clock time and date at job start Tue Mar 31 2020 16:49:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08993 * 109.47145 * 2 1
4 4 C 1.52998 * 109.47020 * 120.00746 * 2 1 3
5 5 C 1.50703 * 109.47038 * 294.99708 * 4 2 1
6 6 H 1.08001 * 119.99812 * 359.97438 * 5 4 2
7 7 C 1.37872 * 120.00279 * 179.97438 * 5 4 2
8 8 N 1.31520 * 119.99919 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00332 * 179.97438 * 7 5 4
10 10 H 1.48496 * 109.46936 * 60.00196 * 9 7 5
11 11 H 1.48497 * 109.47364 * 180.02562 * 9 7 5
12 12 H 1.48501 * 109.46928 * 300.00413 * 9 7 5
13 13 C 1.52998 * 109.46784 * 240.00187 * 2 1 3
14 14 N 1.46904 * 109.47295 * 65.00370 * 13 2 1
15 15 C 1.46899 * 111.00329 * 179.97438 * 14 13 2
16 16 C 1.50701 * 109.47070 * 179.97438 * 15 14 13
17 17 C 1.38253 * 119.99890 * 270.01643 * 16 15 14
18 18 C 1.38212 * 119.99859 * 179.97438 * 17 16 15
19 19 C 1.38255 * 120.00284 * 0.02562 * 18 17 16
20 20 C 1.38217 * 119.99740 * 0.02562 * 19 18 17
21 21 C 1.50706 * 119.99801 * 179.97438 * 20 19 18
22 22 S 1.81398 * 109.46792 * 269.95138 * 21 20 19
23 23 C 1.81403 * 101.91886 * 180.02562 * 22 21 20
24 24 O 1.42104 * 108.57935 * 294.48700 * 22 21 20
25 25 O 1.42101 * 108.58111 * 65.51597 * 22 21 20
26 26 C 1.38215 * 119.99815 * 89.99805 * 16 15 14
27 27 H 1.09001 * 109.47219 * 299.99532 * 1 2 3
28 28 H 1.09007 * 109.47071 * 59.99664 * 1 2 3
29 29 H 1.09007 * 109.47336 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.47387 * 54.99577 * 4 2 1
31 31 H 1.08997 * 109.47203 * 174.99638 * 4 2 1
32 32 H 0.97003 * 120.00219 * 179.97438 * 8 7 5
33 33 H 1.08996 * 109.48002 * 305.00037 * 13 2 1
34 34 H 1.09001 * 109.47256 * 184.99598 * 13 2 1
35 35 H 1.00899 * 111.00153 * 56.03916 * 14 13 2
36 36 H 1.08990 * 109.47349 * 59.99479 * 15 14 13
37 37 H 1.09006 * 109.47060 * 299.99442 * 15 14 13
38 38 H 1.08002 * 120.00364 * 0.02562 * 17 16 15
39 39 H 1.08000 * 119.99961 * 180.02562 * 18 17 16
40 40 H 1.07997 * 120.00435 * 180.02562 * 19 18 17
41 41 H 1.08994 * 109.46953 * 29.94909 * 21 20 19
42 42 H 1.08996 * 109.46834 * 149.95334 * 21 20 19
43 43 H 1.08994 * 109.47152 * 59.99745 * 23 22 21
44 44 H 1.09000 * 109.47012 * 180.02562 * 23 22 21
45 45 H 1.09004 * 109.47173 * 299.99638 * 23 22 21
46 46 H 1.07995 * 120.00164 * 359.72517 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7214 1.2491
5 6 1.6413 0.0568 2.4766
6 1 1.0807 0.9744 2.3757
7 6 1.9923 -0.4026 3.7282
8 7 2.6754 -1.5197 3.8510
9 14 1.4988 0.5624 5.2497
10 1 0.0189 0.6701 5.3090
11 1 1.9936 -0.1378 6.4621
12 1 2.0920 1.9224 5.1872
13 6 2.0399 -0.7212 -1.2493
14 7 1.6514 0.0375 -2.4457
15 6 2.1257 -0.6263 -3.6672
16 6 1.7086 0.1789 -4.8709
17 6 0.4945 -0.0712 -5.4830
18 6 0.1118 0.6677 -6.5865
19 6 0.9432 1.6566 -7.0786
20 6 2.1575 1.9059 -6.4673
21 6 3.0642 2.9835 -7.0040
22 16 4.1803 2.2721 -8.2444
23 6 5.1578 3.7171 -8.7415
24 8 5.0413 1.3438 -7.5994
25 8 3.4068 1.8438 -9.3569
26 6 2.5397 1.1678 -5.3625
27 1 -0.3634 0.5138 0.8900
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0277 -0.0005
30 1 1.6053 -1.7200 1.2950
31 1 3.1263 -0.7997 1.2055
32 1 2.9227 -1.8427 4.7317
33 1 1.6054 -1.7197 -1.2953
34 1 3.1263 -0.7994 -1.2057
35 1 1.9881 0.9874 -2.3966
36 1 1.6921 -1.6243 -3.7302
37 1 3.2126 -0.7035 -3.6402
38 1 -0.1553 -0.8434 -5.0984
39 1 -0.8369 0.4726 -7.0645
40 1 0.6440 2.2343 -7.9407
41 1 2.4633 3.7683 -7.4634
42 1 3.6500 3.4054 -6.1874
43 1 5.6821 4.1171 -7.8737
44 1 5.8826 3.4219 -9.5002
45 1 4.4957 4.4807 -9.1498
46 1 3.4860 1.3664 -4.8814
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602527813.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:49:58
Heat of formation + Delta-G solvation = -63.160435 kcal
Electronic energy + Delta-G solvation = -24486.403208 eV
Core-core repulsion = 20888.585413 eV
Total energy + Delta-G solvation = -3597.817794 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 325.150 amu
Computer time = 1.50 seconds
Orbital eigenvalues (eV)
-39.77232 -37.35546 -36.89741 -36.37758 -34.51732 -33.16323 -32.16728 -30.78894
-30.17515 -27.73724 -26.95733 -26.08002 -24.22298 -22.45716 -22.09115 -21.04381
-19.29898 -19.03746 -17.11866 -16.96933 -16.55403 -16.31836 -16.29169 -15.79287
-15.24793 -14.90897 -14.67749 -14.26296 -14.01651 -13.89730 -13.72476 -13.50483
-13.25606 -13.12780 -12.86680 -12.57830 -12.43745 -12.35544 -12.22021 -12.08369
-11.57429 -11.52256 -11.45814 -11.33103 -11.16175 -11.06779 -10.83562 -10.74370
-10.28240 -10.23427 -9.68801 -9.21702 -9.03082 -8.96698 -8.82248 -8.31495
-8.12093 -5.96354 -3.97535 -0.55746 1.12508 1.17379 2.29349 3.18716
3.34936 3.39328 3.41729 3.51722 3.52824 4.01577 4.14985 4.28097
4.45586 4.50299 4.59697 4.74068 4.82389 4.87987 4.99012 5.12066
5.19568 5.30326 5.39228 5.45122 5.57707 5.73953 5.78628 5.86790
5.92143 6.16871 6.17129 6.24763 6.41782 6.47421 6.55777 6.69835
6.75004 7.01671 7.19264 7.20375 7.34452 7.62857 7.70950 7.86776
8.03820 8.47740 9.08600 9.65628 11.15116
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.021206 B = 0.002021 C = 0.001940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1320.067445 B =13850.117505 C =14428.693952
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.082 4.082
3 H 0.053 0.947
4 C 0.027 3.973
5 C -0.513 4.513
6 H 0.055 0.945
7 C 0.055 3.945
8 N -0.897 5.897
9 Si 0.891 3.109
10 H -0.277 1.277
11 H -0.288 1.288
12 H -0.278 1.278
13 C 0.063 3.937
14 N -0.682 5.682
15 C 0.093 3.907
16 C -0.073 4.073
17 C -0.084 4.084
18 C -0.120 4.120
19 C -0.105 4.105
20 C -0.098 4.098
21 C -0.560 4.560
22 S 2.414 3.586
23 C -0.660 4.660
24 O -0.931 6.931
25 O -0.934 6.934
26 C -0.096 4.096
27 H 0.053 0.947
28 H 0.041 0.959
29 H 0.039 0.961
30 H 0.016 0.984
31 H 0.012 0.988
32 H 0.260 0.740
33 H 0.067 0.933
34 H 0.026 0.974
35 H 0.338 0.662
36 H 0.081 0.919
37 H 0.039 0.961
38 H 0.129 0.871
39 H 0.127 0.873
40 H 0.127 0.873
41 H 0.140 0.860
42 H 0.141 0.859
43 H 0.129 0.871
44 H 0.129 0.871
45 H 0.128 0.872
46 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.106 10.544 -27.915 29.861
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.101 4.101
3 H 0.071 0.929
4 C -0.010 4.010
5 C -0.551 4.551
6 H 0.074 0.926
7 C -0.146 4.146
8 N -0.537 5.537
9 Si 0.719 3.281
10 H -0.203 1.203
11 H -0.214 1.214
12 H -0.203 1.203
13 C -0.066 4.066
14 N -0.312 5.312
15 C -0.036 4.036
16 C -0.073 4.073
17 C -0.104 4.104
18 C -0.138 4.138
19 C -0.124 4.124
20 C -0.100 4.100
21 C -0.688 4.688
22 S 2.596 3.404
23 C -0.809 4.809
24 O -0.928 6.928
25 O -0.932 6.932
26 C -0.115 4.115
27 H 0.072 0.928
28 H 0.060 0.940
29 H 0.058 0.942
30 H 0.035 0.965
31 H 0.031 0.969
32 H 0.070 0.930
33 H 0.086 0.914
34 H 0.044 0.956
35 H 0.155 0.845
36 H 0.100 0.900
37 H 0.057 0.943
38 H 0.147 0.853
39 H 0.145 0.855
40 H 0.145 0.855
41 H 0.158 0.842
42 H 0.159 0.841
43 H 0.148 0.852
44 H 0.148 0.852
45 H 0.147 0.853
46 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 0.662 9.283 -28.126 29.626
hybrid contribution 0.761 1.640 1.257 2.202
sum 1.423 10.923 -26.869 29.039
Atomic orbital electron populations
1.21590 0.95721 1.00571 1.00121 1.21195 0.96009 0.98883 0.93989
0.92881 1.19121 0.95916 0.95589 0.90405 1.21196 1.34666 1.08254
0.90994 0.92645 1.25026 0.95366 0.95114 0.99096 1.69958 1.39029
1.21211 1.23473 0.86683 0.78891 0.80071 0.82489 1.20273 1.21388
1.20349 1.22192 0.97317 0.97778 0.89281 1.60606 1.63905 1.05766
1.00960 1.20927 0.97805 0.97326 0.87564 1.19879 0.94467 0.96414
0.96569 1.21199 0.95473 0.99061 0.94623 1.21157 0.99847 0.95998
0.96801 1.21074 0.93391 0.98298 0.99617 1.18761 0.95692 0.97235
0.98282 1.29288 1.13707 1.08190 1.17571 1.08267 0.77160 0.78048
0.76942 1.30326 1.16035 1.21718 1.12828 1.93619 1.65464 1.57677
1.76077 1.93598 1.70109 1.79203 1.50243 1.21037 0.99853 0.95273
0.95358 0.92808 0.93955 0.94157 0.96532 0.96923 0.93048 0.91402
0.95611 0.84492 0.90032 0.94258 0.85317 0.85466 0.85524 0.84156
0.84060 0.85227 0.85195 0.85339 0.85478
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16
2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.89 16
3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16
4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16
5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16
6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16
7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16
8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16
9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16
10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16
11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16
12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
13 C 0.06 1.07 5.07 -3.82 -0.02 1.05 16
14 N -0.68 -9.82 5.94 -115.06 -0.68 -10.50 16
15 C 0.09 1.16 5.81 -4.98 -0.03 1.13 16
16 C -0.07 -0.85 5.39 -104.62 -0.56 -1.42 16
17 C -0.08 -0.92 9.70 -39.59 -0.38 -1.30 16
18 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16
19 C -0.10 -0.98 9.70 -39.58 -0.38 -1.37 16
20 C -0.10 -0.93 5.14 -104.62 -0.54 -1.47 16
21 C -0.56 -3.00 5.93 36.01 0.21 -2.79 16
22 S 2.41 16.32 5.34 -107.50 -0.57 15.74 16
23 C -0.66 -1.77 10.62 101.05 1.07 -0.70 16
24 O -0.93 -10.28 18.10 -57.83 -1.05 -11.32 16
25 O -0.93 -9.65 18.10 -57.83 -1.05 -10.70 16
26 C -0.10 -1.04 9.36 -39.58 -0.37 -1.41 16
27 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16
28 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16
29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
34 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16
35 H 0.34 4.68 8.72 -39.29 -0.34 4.34 16
36 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16
37 H 0.04 0.48 8.09 -51.93 -0.42 0.07 16
38 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16
39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16
40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16
41 H 0.14 0.33 8.08 -51.93 -0.42 -0.09 16
42 H 0.14 0.44 8.09 -51.93 -0.42 0.02 16
43 H 0.13 0.13 8.14 -51.93 -0.42 -0.29 16
44 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16
45 H 0.13 0.08 8.14 -51.92 -0.42 -0.34 16
46 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16
LS Contribution 394.73 15.07 5.95 5.95
Total: -1.00 -36.75 394.73 -11.28 -48.03
By element:
Atomic # 1 Polarization: 6.59 SS G_CDS: -7.79 Total: -1.20 kcal
Atomic # 6 Polarization: -24.60 SS G_CDS: -1.80 Total: -26.41 kcal
Atomic # 7 Polarization: -36.90 SS G_CDS: 0.05 Total: -36.85 kcal
Atomic # 8 Polarization: -19.93 SS G_CDS: -2.09 Total: -22.02 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal
Atomic # 16 Polarization: 16.32 SS G_CDS: -0.57 Total: 15.74 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -36.75 -11.28 -48.03 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602527813.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.127 kcal
(2) G-P(sol) polarization free energy of solvation -36.754 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.881 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.279 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.033 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.160 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.50 seconds