Wall clock time and date at job start Tue Mar 31 2020 16:49:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08993 * 109.47145 * 2 1
4 4 C 1.52998 * 109.47020 * 120.00746 * 2 1 3
5 5 C 1.50703 * 109.47038 * 294.99708 * 4 2 1
6 6 H 1.08001 * 119.99812 * 359.97438 * 5 4 2
7 7 C 1.37872 * 120.00279 * 179.97438 * 5 4 2
8 8 N 1.31520 * 119.99919 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00332 * 179.97438 * 7 5 4
10 10 H 1.48496 * 109.46936 * 60.00196 * 9 7 5
11 11 H 1.48497 * 109.47364 * 180.02562 * 9 7 5
12 12 H 1.48501 * 109.46928 * 300.00413 * 9 7 5
13 13 C 1.52998 * 109.46784 * 240.00187 * 2 1 3
14 14 N 1.46904 * 109.47295 * 65.00370 * 13 2 1
15 15 C 1.46899 * 111.00329 * 179.97438 * 14 13 2
16 16 C 1.50701 * 109.47070 * 179.97438 * 15 14 13
17 17 C 1.38253 * 119.99890 * 270.01643 * 16 15 14
18 18 C 1.38212 * 119.99859 * 179.97438 * 17 16 15
19 19 C 1.38255 * 120.00284 * 0.02562 * 18 17 16
20 20 C 1.38217 * 119.99740 * 0.02562 * 19 18 17
21 21 C 1.50706 * 119.99801 * 179.97438 * 20 19 18
22 22 S 1.81398 * 109.46792 * 269.95138 * 21 20 19
23 23 C 1.81403 * 101.91886 * 180.02562 * 22 21 20
24 24 O 1.42104 * 108.57935 * 294.48700 * 22 21 20
25 25 O 1.42101 * 108.58111 * 65.51597 * 22 21 20
26 26 C 1.38215 * 119.99815 * 89.99805 * 16 15 14
27 27 H 1.09001 * 109.47219 * 299.99532 * 1 2 3
28 28 H 1.09007 * 109.47071 * 59.99664 * 1 2 3
29 29 H 1.09007 * 109.47336 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.47387 * 54.99577 * 4 2 1
31 31 H 1.08997 * 109.47203 * 174.99638 * 4 2 1
32 32 H 0.97003 * 120.00219 * 179.97438 * 8 7 5
33 33 H 1.08996 * 109.48002 * 305.00037 * 13 2 1
34 34 H 1.09001 * 109.47256 * 184.99598 * 13 2 1
35 35 H 1.00899 * 111.00153 * 56.03916 * 14 13 2
36 36 H 1.08990 * 109.47349 * 59.99479 * 15 14 13
37 37 H 1.09006 * 109.47060 * 299.99442 * 15 14 13
38 38 H 1.08002 * 120.00364 * 0.02562 * 17 16 15
39 39 H 1.08000 * 119.99961 * 180.02562 * 18 17 16
40 40 H 1.07997 * 120.00435 * 180.02562 * 19 18 17
41 41 H 1.08994 * 109.46953 * 29.94909 * 21 20 19
42 42 H 1.08996 * 109.46834 * 149.95334 * 21 20 19
43 43 H 1.08994 * 109.47152 * 59.99745 * 23 22 21
44 44 H 1.09000 * 109.47012 * 180.02562 * 23 22 21
45 45 H 1.09004 * 109.47173 * 299.99638 * 23 22 21
46 46 H 1.07995 * 120.00164 * 359.72517 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7214 1.2491
5 6 1.6413 0.0568 2.4766
6 1 1.0807 0.9744 2.3757
7 6 1.9923 -0.4026 3.7282
8 7 2.6754 -1.5197 3.8510
9 14 1.4988 0.5624 5.2497
10 1 0.0189 0.6701 5.3090
11 1 1.9936 -0.1378 6.4621
12 1 2.0920 1.9224 5.1872
13 6 2.0399 -0.7212 -1.2493
14 7 1.6514 0.0375 -2.4457
15 6 2.1257 -0.6263 -3.6672
16 6 1.7086 0.1789 -4.8709
17 6 0.4945 -0.0712 -5.4830
18 6 0.1118 0.6677 -6.5865
19 6 0.9432 1.6566 -7.0786
20 6 2.1575 1.9059 -6.4673
21 6 3.0642 2.9835 -7.0040
22 16 4.1803 2.2721 -8.2444
23 6 5.1578 3.7171 -8.7415
24 8 5.0413 1.3438 -7.5994
25 8 3.4068 1.8438 -9.3569
26 6 2.5397 1.1678 -5.3625
27 1 -0.3634 0.5138 0.8900
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0277 -0.0005
30 1 1.6053 -1.7200 1.2950
31 1 3.1263 -0.7997 1.2055
32 1 2.9227 -1.8427 4.7317
33 1 1.6054 -1.7197 -1.2953
34 1 3.1263 -0.7994 -1.2057
35 1 1.9881 0.9874 -2.3966
36 1 1.6921 -1.6243 -3.7302
37 1 3.2126 -0.7035 -3.6402
38 1 -0.1553 -0.8434 -5.0984
39 1 -0.8369 0.4726 -7.0645
40 1 0.6440 2.2343 -7.9407
41 1 2.4633 3.7683 -7.4634
42 1 3.6500 3.4054 -6.1874
43 1 5.6821 4.1171 -7.8737
44 1 5.8826 3.4219 -9.5002
45 1 4.4957 4.4807 -9.1498
46 1 3.4860 1.3664 -4.8814
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602527813.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:49:55
Heat of formation + Delta-G solvation = -89.034425 kcal
Electronic energy + Delta-G solvation = -24487.525188 eV
Core-core repulsion = 20888.585413 eV
Total energy + Delta-G solvation = -3598.939775 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 325.150 amu
Computer time = 5.23 seconds
Orbital eigenvalues (eV)
-40.53032 -38.31130 -37.97929 -37.00282 -35.94344 -34.38063 -33.59287 -31.89624
-30.44699 -28.92751 -28.28024 -27.36149 -25.75049 -23.94873 -23.04294 -21.89898
-20.72398 -19.78395 -18.48641 -17.72291 -17.54499 -17.13904 -16.92095 -16.70854
-16.58949 -16.09971 -15.94640 -15.61814 -15.31352 -14.64832 -14.31217 -14.29321
-13.91351 -13.91043 -13.88286 -13.62852 -13.59491 -13.32695 -13.10924 -13.07991
-13.02938 -12.99675 -12.73838 -12.56567 -12.22070 -12.18839 -12.07417 -12.06717
-11.85555 -11.62353 -11.48484 -11.09386 -10.92645 -10.52346 -9.83584 -9.60939
-9.32019 -8.16666 -6.25939 -1.02451 0.36278 0.42885 1.40470 1.43388
1.51062 1.88527 2.42538 2.66378 2.79668 3.10531 3.16514 3.39227
3.51001 3.76695 3.89307 4.10910 4.11556 4.15342 4.20214 4.28316
4.33014 4.41011 4.49193 4.54337 4.61120 4.65679 4.72526 4.89625
4.93698 4.98580 5.02674 5.05247 5.10656 5.29013 5.43950 5.46587
5.50286 5.51393 5.56180 5.66026 5.81532 5.89359 5.97907 6.05406
6.31455 6.45482 6.89870 7.42162 8.95172
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.021206 B = 0.002021 C = 0.001940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1320.067445 B =13850.117505 C =14428.693952
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.073 4.073
3 H 0.054 0.946
4 C 0.032 3.968
5 C -0.529 4.529
6 H 0.061 0.939
7 C -0.004 4.004
8 N -0.936 5.936
9 Si 0.962 3.038
10 H -0.267 1.267
11 H -0.285 1.285
12 H -0.267 1.267
13 C 0.076 3.924
14 N -0.676 5.676
15 C 0.096 3.904
16 C -0.090 4.090
17 C -0.100 4.100
18 C -0.126 4.126
19 C -0.114 4.114
20 C -0.107 4.107
21 C -0.554 4.554
22 S 2.405 3.595
23 C -0.636 4.636
24 O -0.988 6.988
25 O -0.981 6.981
26 C -0.114 4.114
27 H 0.037 0.963
28 H 0.066 0.934
29 H 0.035 0.965
30 H -0.010 1.010
31 H -0.014 1.014
32 H 0.262 0.738
33 H 0.064 0.936
34 H 0.019 0.981
35 H 0.343 0.657
36 H 0.081 0.919
37 H 0.038 0.962
38 H 0.132 0.868
39 H 0.149 0.851
40 H 0.150 0.850
41 H 0.177 0.823
42 H 0.167 0.833
43 H 0.154 0.846
44 H 0.135 0.865
45 H 0.159 0.841
46 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.540 13.675 -29.098 32.156
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.092 4.092
3 H 0.072 0.928
4 C -0.006 4.006
5 C -0.567 4.567
6 H 0.079 0.921
7 C -0.201 4.201
8 N -0.577 5.577
9 Si 0.787 3.213
10 H -0.192 1.192
11 H -0.211 1.211
12 H -0.192 1.192
13 C -0.053 4.053
14 N -0.307 5.307
15 C -0.032 4.032
16 C -0.091 4.091
17 C -0.119 4.119
18 C -0.143 4.143
19 C -0.133 4.133
20 C -0.108 4.108
21 C -0.682 4.682
22 S 2.594 3.406
23 C -0.789 4.789
24 O -0.985 6.985
25 O -0.978 6.978
26 C -0.133 4.133
27 H 0.057 0.943
28 H 0.084 0.916
29 H 0.054 0.946
30 H 0.008 0.992
31 H 0.004 0.996
32 H 0.070 0.930
33 H 0.082 0.918
34 H 0.038 0.962
35 H 0.161 0.839
36 H 0.100 0.900
37 H 0.056 0.944
38 H 0.150 0.850
39 H 0.166 0.834
40 H 0.168 0.832
41 H 0.195 0.805
42 H 0.185 0.815
43 H 0.172 0.828
44 H 0.153 0.847
45 H 0.177 0.823
46 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 0.075 12.383 -29.328 31.835
hybrid contribution 0.971 0.735 1.536 1.960
sum 1.046 13.118 -27.792 30.751
Atomic orbital electron populations
1.21484 0.94687 1.00375 1.00457 1.20999 0.96707 0.98406 0.93049
0.92759 1.19018 0.94102 0.94716 0.92745 1.21606 1.34464 1.08572
0.92040 0.92054 1.25976 0.95301 0.96138 1.02719 1.70102 1.40271
1.22955 1.24325 0.85546 0.78925 0.78764 0.78092 1.19232 1.21086
1.19185 1.21891 0.96714 0.97463 0.89270 1.60530 1.63885 1.05814
1.00500 1.20898 0.97705 0.97471 0.87162 1.19848 0.95368 0.97198
0.96645 1.21345 0.95447 0.99738 0.95418 1.21478 1.00829 0.95690
0.96341 1.21488 0.93361 0.98316 1.00129 1.19170 0.96346 0.97748
0.97554 1.29289 1.13379 1.07696 1.17859 1.08057 0.77039 0.79237
0.76254 1.30105 1.15712 1.18970 1.14105 1.93552 1.66679 1.61355
1.76951 1.93538 1.71347 1.81286 1.51664 1.21239 1.00060 0.95650
0.96396 0.94344 0.91555 0.94625 0.99186 0.99573 0.92963 0.91797
0.96237 0.83947 0.90011 0.94363 0.84982 0.83367 0.83210 0.80492
0.81489 0.82791 0.84667 0.82265 0.85103
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.34 8.89 71.98 0.64 -3.70 16
2 C -0.07 -2.99 2.48 -10.79 -0.03 -3.01 16
3 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16
4 C 0.03 1.69 4.45 29.85 0.13 1.82 16
5 C -0.53 -30.08 8.41 25.60 0.22 -29.86 16
6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16
7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16
8 N -0.94 -57.70 13.29 21.45 0.28 -57.41 16
9 Si 0.96 44.68 29.54 68.60 2.03 46.70 16
10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16
12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
13 C 0.08 2.62 5.07 86.30 0.44 3.06 16
14 N -0.68 -19.22 5.94 -517.94 -3.08 -22.30 16
15 C 0.10 2.42 5.81 85.56 0.50 2.92 16
16 C -0.09 -2.10 5.39 -19.87 -0.11 -2.21 16
17 C -0.10 -2.14 9.70 22.27 0.22 -1.92 16
18 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16
19 C -0.11 -1.94 9.70 22.27 0.22 -1.72 16
20 C -0.11 -1.86 5.14 -19.86 -0.10 -1.96 16
21 C -0.55 -4.34 5.93 71.24 0.42 -3.92 16
22 S 2.41 29.34 5.34 -56.49 -0.30 29.03 16
23 C -0.64 -1.02 10.62 113.37 1.20 0.18 16
24 O -0.99 -22.16 18.10 -127.37 -2.30 -24.47 16
25 O -0.98 -19.80 18.10 -127.37 -2.31 -22.11 16
26 C -0.11 -2.42 9.36 22.27 0.21 -2.21 16
27 H 0.04 1.57 6.95 -2.39 -0.02 1.56 16
28 H 0.07 2.23 7.75 -2.38 -0.02 2.21 16
29 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16
30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16
31 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16
32 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16
33 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16
34 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16
35 H 0.34 9.24 8.72 -89.69 -0.78 8.45 16
36 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16
37 H 0.04 0.96 8.09 -2.38 -0.02 0.95 16
38 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16
39 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16
40 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16
41 H 0.18 0.05 8.08 -2.39 -0.02 0.03 16
42 H 0.17 0.45 8.09 -2.39 -0.02 0.43 16
43 H 0.15 -0.39 8.14 -2.39 -0.02 -0.41 16
44 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16
45 H 0.16 -0.63 8.14 -2.39 -0.02 -0.65 16
46 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16
Total: -1.00 -82.47 394.73 -0.87 -83.34
By element:
Atomic # 1 Polarization: 11.41 SS G_CDS: 0.17 Total: 11.58 kcal
Atomic # 6 Polarization: -49.01 SS G_CDS: 4.64 Total: -44.37 kcal
Atomic # 7 Polarization: -76.92 SS G_CDS: -2.79 Total: -79.71 kcal
Atomic # 8 Polarization: -41.96 SS G_CDS: -4.61 Total: -46.57 kcal
Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal
Atomic # 16 Polarization: 29.34 SS G_CDS: -0.30 Total: 29.03 kcal
Total: -82.47 -0.87 -83.34 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602527813.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.694 kcal
(2) G-P(sol) polarization free energy of solvation -82.467 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.161 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.873 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.341 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.034 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 5.24 seconds