Wall clock time and date at job start Tue Mar 31 2020 16:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00104 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00175 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47556 * 90.00047 * 9 7 5 11 11 H 1.48504 * 109.47118 * 210.00306 * 9 7 5 12 12 H 1.48508 * 109.46863 * 330.00026 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46904 * 109.47486 * 295.00613 * 13 2 1 15 15 C 1.46894 * 111.00353 * 179.97438 * 14 13 2 16 16 C 1.50702 * 109.47376 * 179.97438 * 15 14 13 17 17 C 1.38231 * 119.99576 * 269.72945 * 16 15 14 18 18 C 1.38239 * 119.99363 * 179.76323 * 17 16 15 19 19 C 1.38235 * 120.00484 * 0.48533 * 18 17 16 20 20 C 1.50697 * 120.00509 * 179.76684 * 19 18 17 21 21 S 1.81397 * 109.47099 * 270.02399 * 20 19 18 22 22 C 1.81402 * 101.91857 * 180.02562 * 21 20 19 23 23 O 1.42102 * 108.57429 * 294.48398 * 21 20 19 24 24 O 1.42094 * 108.58276 * 65.51088 * 21 20 19 25 25 C 1.38240 * 119.99333 * 359.78577 * 19 18 17 26 26 C 1.38231 * 119.99868 * 89.99950 * 16 15 14 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 31 31 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 32 32 H 0.97004 * 120.00016 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 34 34 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 35 35 H 1.00894 * 110.99853 * 56.03851 * 14 13 2 36 36 H 1.09002 * 109.47086 * 300.00088 * 15 14 13 37 37 H 1.09005 * 109.47157 * 59.99929 * 15 14 13 38 38 H 1.07999 * 120.00818 * 359.97438 * 17 16 15 39 39 H 1.08005 * 119.99703 * 180.24960 * 18 17 16 40 40 H 1.09003 * 109.46717 * 30.02357 * 20 19 18 41 41 H 1.08997 * 109.46727 * 150.02088 * 20 19 18 42 42 H 1.08995 * 109.47493 * 59.99731 * 22 21 20 43 43 H 1.09002 * 109.46859 * 180.02562 * 22 21 20 44 44 H 1.08997 * 109.47026 * 299.99587 * 22 21 20 45 45 H 1.08001 * 119.99642 * 179.97438 * 25 19 18 46 46 H 1.07998 * 120.00260 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6748 -1.5198 -3.8512 9 14 1.4989 0.5628 -5.2496 10 1 2.5649 1.5416 -5.5825 11 1 1.3111 -0.3711 -6.3889 12 1 0.2282 1.2851 -4.9869 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1247 -0.6270 3.6673 16 6 1.7087 0.1788 4.8709 17 6 2.5437 1.1628 5.3660 18 6 2.1599 1.9052 6.4672 19 6 0.9456 1.6568 7.0792 20 6 0.5295 2.4626 8.2828 21 16 1.1141 1.6421 9.7913 22 6 0.5122 2.7627 11.0846 23 8 0.4393 0.3983 9.9206 24 8 2.5349 1.6646 9.7974 25 6 0.1131 0.6689 6.5874 26 6 0.4946 -0.0700 5.4831 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 3.1263 -0.7994 -1.2055 31 1 1.6054 -1.7198 -1.2951 32 1 2.9221 -1.8428 -4.7318 33 1 1.6054 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2057 35 1 0.6528 0.1793 2.4753 36 1 1.6904 -1.6248 3.7297 37 1 3.2116 -0.7049 3.6406 38 1 3.4944 1.3540 4.8907 39 1 2.8105 2.6768 6.8516 40 1 0.9641 3.4602 8.2200 41 1 -0.5574 2.5408 8.3096 42 1 -0.5742 2.8317 11.0288 43 1 0.8025 2.3783 12.0624 44 1 0.9470 3.7516 10.9397 45 1 -0.8355 0.4745 7.0658 46 1 -0.1561 -0.8415 5.0987 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602585041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:32 Heat of formation + Delta-G solvation = -89.082332 kcal Electronic energy + Delta-G solvation = -24236.333056 eV Core-core repulsion = 20637.391204 eV Total energy + Delta-G solvation = -3598.941852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 5.15 seconds Orbital eigenvalues (eV) -40.53009 -38.40921 -37.96515 -36.98834 -36.02221 -34.48458 -33.12635 -31.89889 -30.48740 -29.54226 -28.56333 -26.89226 -25.26347 -23.82450 -23.66664 -21.84942 -20.65735 -19.80143 -18.55220 -17.76033 -17.53174 -17.24625 -16.96613 -16.62493 -16.45003 -16.05685 -15.93107 -15.71770 -15.12818 -14.65103 -14.35641 -14.29334 -14.06802 -13.95362 -13.88672 -13.68042 -13.59664 -13.34836 -13.23339 -13.09148 -13.00048 -12.94610 -12.77270 -12.56315 -12.29342 -12.21353 -12.05512 -11.90672 -11.89161 -11.60183 -11.49437 -11.07277 -10.94385 -10.52942 -9.88695 -9.61724 -9.31479 -8.16949 -6.26063 -1.01620 0.32998 0.44958 1.40537 1.41653 1.52512 1.90209 2.42413 2.65443 2.81240 3.12244 3.16389 3.40205 3.52224 3.78419 3.90059 4.05196 4.09315 4.13210 4.22070 4.24550 4.31386 4.45280 4.46516 4.49887 4.59374 4.67784 4.75014 4.78251 4.87223 5.00046 5.03267 5.04493 5.11885 5.23796 5.38075 5.39252 5.47144 5.48465 5.55610 5.66451 5.79859 5.89561 5.98326 6.05978 6.31415 6.46739 6.89843 7.42045 8.95003 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.039512 B = 0.001731 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.480014 B =16168.364382 C =16258.671867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.076 3.924 14 N -0.683 5.683 15 C 0.095 3.905 16 C -0.081 4.081 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.553 4.553 21 S 2.405 3.595 22 C -0.635 4.635 23 O -0.985 6.985 24 O -0.985 6.985 25 C -0.113 4.113 26 C -0.124 4.124 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.065 0.935 30 H -0.013 1.013 31 H -0.009 1.009 32 H 0.262 0.738 33 H 0.026 0.974 34 H 0.059 0.941 35 H 0.344 0.656 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.173 0.827 41 H 0.174 0.826 42 H 0.157 0.843 43 H 0.134 0.866 44 H 0.157 0.843 45 H 0.148 0.852 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 11.234 32.516 35.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.053 4.053 14 N -0.315 5.315 15 C -0.033 4.033 16 C -0.082 4.082 17 C -0.131 4.131 18 C -0.134 4.134 19 C -0.109 4.109 20 C -0.681 4.681 21 S 2.594 3.406 22 C -0.788 4.788 23 O -0.982 6.982 24 O -0.983 6.983 25 C -0.132 4.132 26 C -0.142 4.142 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.005 0.995 31 H 0.009 0.991 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.164 0.836 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.148 0.852 39 H 0.163 0.837 40 H 0.191 0.809 41 H 0.192 0.808 42 H 0.176 0.824 43 H 0.153 0.847 44 H 0.175 0.825 45 H 0.166 0.834 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.736 10.735 32.476 34.861 hybrid contribution -0.748 -0.177 -1.316 1.524 sum -7.484 10.558 31.160 33.741 Atomic orbital electron populations 1.21647 0.94964 1.00706 1.01044 1.21014 0.96243 0.98981 0.93188 0.92563 1.19010 0.94255 0.94621 0.92654 1.21645 1.34480 1.08525 0.92067 0.92078 1.25968 0.95315 0.96116 1.02694 1.70106 1.40333 1.22888 1.24255 0.85489 0.78995 0.78335 0.78475 1.20000 1.20928 1.18698 1.21875 0.99785 0.94320 0.89300 1.60546 1.20220 1.50122 1.00647 1.20921 1.01014 0.94442 0.86967 1.19965 0.95087 0.97017 0.96117 1.21247 1.00308 0.95223 0.96331 1.21425 0.96268 1.00122 0.95597 1.19254 0.95724 0.98132 0.97785 1.29288 1.15078 1.12002 1.11745 1.08072 0.75099 0.77773 0.79700 1.30099 1.15148 1.17043 1.16522 1.93543 1.76645 1.41766 1.86248 1.93544 1.30136 1.87786 1.86806 1.21408 1.00479 0.95122 0.96211 1.21292 0.96126 1.00421 0.96370 0.93978 0.93581 0.91633 0.99484 0.99104 0.92975 0.95598 0.92253 0.83608 0.93763 0.90282 0.85157 0.83652 0.80916 0.80775 0.82444 0.84730 0.82505 0.83388 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 8.77 71.98 0.63 -3.98 16 2 C -0.08 -3.11 2.54 -10.80 -0.03 -3.14 16 3 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.03 1.71 4.45 29.85 0.13 1.84 16 5 C -0.53 -30.17 8.41 25.60 0.22 -29.96 16 6 H 0.06 3.35 7.06 -2.92 -0.02 3.33 16 7 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 8 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 9 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 13 C 0.08 2.65 5.14 86.30 0.44 3.09 16 14 N -0.68 -19.68 6.49 -517.92 -3.36 -23.04 16 15 C 0.09 2.36 5.81 85.56 0.50 2.86 16 16 C -0.08 -1.88 5.39 -19.87 -0.11 -1.99 16 17 C -0.11 -2.52 9.70 22.27 0.22 -2.31 16 18 C -0.12 -2.20 9.70 22.27 0.22 -1.99 16 19 C -0.11 -1.78 5.14 -19.87 -0.10 -1.88 16 20 C -0.55 -3.50 5.93 71.24 0.42 -3.08 16 21 S 2.40 26.04 5.34 -56.49 -0.30 25.74 16 22 C -0.64 -0.02 10.62 113.37 1.20 1.18 16 23 O -0.98 -19.58 18.10 -127.37 -2.30 -21.89 16 24 O -0.99 -19.91 18.10 -127.37 -2.31 -22.21 16 25 C -0.11 -2.04 9.70 22.27 0.22 -1.83 16 26 C -0.12 -2.56 9.70 22.27 0.22 -2.34 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.83 6.95 -2.39 -0.02 1.81 16 29 H 0.06 1.94 6.68 -2.38 -0.02 1.92 16 30 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.34 9.24 6.97 -89.70 -0.63 8.62 16 36 H 0.04 1.04 8.09 -2.39 -0.02 1.02 16 37 H 0.08 1.98 8.08 -2.38 -0.02 1.96 16 38 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.17 -0.02 8.09 -2.39 -0.02 -0.04 16 41 H 0.17 -0.09 8.09 -2.39 -0.02 -0.11 16 42 H 0.16 -0.79 8.14 -2.39 -0.02 -0.81 16 43 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.16 -0.76 8.14 -2.39 -0.02 -0.78 16 45 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -82.98 392.47 -1.00 -83.98 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.33 Total: 11.17 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 4.64 Total: -43.26 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -3.08 Total: -80.36 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -4.61 Total: -44.10 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 26.04 SS G_CDS: -0.30 Total: 25.74 kcal Total: -82.98 -1.00 -83.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602585041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.101 kcal (2) G-P(sol) polarization free energy of solvation -82.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.15 seconds