Wall clock time and date at job start Tue Mar 31 2020 14:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47104 * 2 1 4 4 N 1.46504 * 109.46568 * 180.02562 * 3 2 1 5 5 C 1.46501 * 120.00015 * 274.99800 * 4 3 2 6 6 C 1.53008 * 109.46979 * 275.00060 * 5 4 3 7 7 C 1.53001 * 109.46935 * 174.99740 * 6 5 4 8 8 C 1.52994 * 109.47242 * 295.00221 * 6 5 4 9 9 S 1.65603 * 120.00003 * 95.00462 * 4 3 2 10 10 O 1.42101 * 106.40420 * 156.45544 * 9 4 3 11 11 O 1.42093 * 106.40486 * 23.53290 * 9 4 3 12 12 C 1.76202 * 107.21304 * 269.99315 * 9 4 3 13 13 C 1.38656 * 119.87802 * 270.24806 * 12 9 4 14 14 C 1.38611 * 120.50290 * 180.30014 * 13 12 9 15 15 C 1.37646 * 120.24720 * 359.45638 * 14 13 12 16 16 C 1.40700 * 119.74049 * 0.26612 * 15 14 13 17 17 C 1.41394 * 120.23887 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99918 * 204.39256 * 17 16 15 19 19 C 1.39939 * 120.00458 * 24.38628 * 17 16 15 20 20 N 1.30826 * 119.99815 * 17.86380 * 19 17 16 21 21 Si 1.86807 * 120.00442 * 197.86044 * 19 17 16 22 22 H 1.48504 * 109.46582 * 94.69503 * 21 19 17 23 23 H 1.48499 * 109.47234 * 214.69507 * 21 19 17 24 24 H 1.48502 * 109.46792 * 334.69880 * 21 19 17 25 25 C 1.37595 * 119.87364 * 90.00510 * 12 9 4 26 26 H 1.08995 * 109.47192 * 59.99762 * 1 2 3 27 27 H 1.08997 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46876 * 299.99873 * 1 2 3 29 29 H 1.08997 * 109.46631 * 239.99758 * 2 1 3 30 30 H 1.09000 * 109.46742 * 120.00231 * 2 1 3 31 31 H 1.08997 * 109.47574 * 60.00336 * 3 2 1 32 32 H 1.09002 * 109.47034 * 299.99540 * 3 2 1 33 33 H 1.08992 * 109.46981 * 34.99970 * 5 4 3 34 34 H 1.08994 * 109.47333 * 155.00752 * 5 4 3 35 35 H 1.09009 * 109.46744 * 55.00127 * 6 5 4 36 36 H 1.09000 * 109.46817 * 60.00694 * 7 6 5 37 37 H 1.09001 * 109.46660 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47286 * 300.00362 * 7 6 5 39 39 H 1.09000 * 109.47206 * 59.99901 * 8 6 5 40 40 H 1.09001 * 109.47122 * 179.97438 * 8 6 5 41 41 H 1.09000 * 109.47389 * 299.99844 * 8 6 5 42 42 H 1.08005 * 119.75084 * 0.05438 * 13 12 9 43 43 H 1.07994 * 119.87907 * 179.72408 * 14 13 12 44 44 H 1.07991 * 120.12819 * 180.25140 * 15 14 13 45 45 H 0.97002 * 120.00124 * 179.97438 * 20 19 17 46 46 H 1.07998 * 120.13108 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.2381 1.3315 1.2630 6 6 4.3846 2.7191 1.8909 7 6 5.0389 2.5892 3.2679 8 6 5.2580 3.5962 0.9918 9 16 4.3325 1.5676 -1.4296 10 8 5.6155 2.0857 -1.1064 11 8 3.4505 2.1948 -2.3504 12 6 4.5929 -0.0697 -2.0266 13 6 5.7340 -0.7659 -1.6580 14 6 5.9550 -2.0521 -2.1250 15 6 5.0361 -2.6568 -2.9524 16 6 3.8718 -1.9620 -3.3283 17 6 2.9211 -2.5728 -4.1782 18 1 2.2603 -1.9626 -4.7760 19 6 2.8365 -3.9680 -4.2449 20 7 3.3642 -4.7013 -3.2987 21 14 1.9699 -4.7835 -5.6849 22 1 2.9679 -5.1422 -6.7244 23 1 1.2800 -6.0122 -5.2161 24 1 0.9729 -3.8444 -6.2588 25 6 3.6608 -0.6543 -2.8527 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6909 0.6803 1.9444 34 1 5.2262 0.9121 1.0742 35 1 3.4003 3.1752 1.9979 36 1 6.0231 2.1332 3.1608 37 1 5.1428 3.5777 3.7154 38 1 4.4166 1.9643 3.9084 39 1 4.7918 3.6887 0.0109 40 1 5.3620 4.5848 1.4389 41 1 6.2422 3.1402 0.8847 42 1 6.4581 -0.3009 -1.0053 43 1 6.8493 -2.5835 -1.8351 44 1 5.2082 -3.6605 -3.3118 45 1 3.3052 -5.6685 -3.3447 46 1 2.7706 -0.1120 -3.1351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619479651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:43 Heat of formation + Delta-G solvation = -93.950192 kcal Electronic energy + Delta-G solvation = -26961.100898 eV Core-core repulsion = 23361.947960 eV Total energy + Delta-G solvation = -3599.152938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -39.46063 -38.89281 -38.34323 -36.89327 -35.78905 -35.63973 -33.07432 -31.92214 -31.59207 -27.97132 -27.83732 -27.33957 -25.64140 -23.65063 -22.82112 -22.49475 -21.04940 -20.11609 -19.43463 -18.61275 -17.79157 -17.31687 -16.96662 -16.54633 -15.95326 -15.66831 -15.58244 -15.34661 -15.19940 -14.90635 -14.38463 -14.32193 -13.83887 -13.75255 -13.60606 -13.41117 -13.29930 -13.07733 -13.05824 -12.93579 -12.89452 -12.77544 -12.63628 -12.57412 -12.37559 -12.26480 -12.15995 -11.89127 -11.71449 -11.57415 -11.51158 -11.39083 -11.27033 -11.15730 -9.99514 -9.76201 -9.56648 -8.74160 -6.46132 -0.49676 0.40840 0.83232 1.36048 1.44676 1.49246 2.07245 2.16504 2.56032 2.77689 3.40555 3.50348 3.75420 3.99373 4.07639 4.16629 4.22119 4.28315 4.32777 4.41807 4.51077 4.64475 4.69690 4.81516 4.81882 4.89128 4.89233 4.92745 4.94340 5.01289 5.05187 5.09883 5.18295 5.20927 5.25659 5.30147 5.38144 5.39750 5.44999 5.51394 5.56026 5.62124 5.78249 5.87750 5.92822 6.09540 6.51564 6.78753 6.83972 8.23682 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016968 B = 0.004162 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.746894 B = 6726.409997 C = 7305.449868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.152 4.152 3 C 0.117 3.883 4 N -0.987 5.987 5 C 0.120 3.880 6 C -0.111 4.111 7 C -0.140 4.140 8 C -0.147 4.147 9 S 2.702 3.298 10 O -0.971 6.971 11 O -0.998 6.998 12 C -0.640 4.640 13 C -0.148 4.148 14 C -0.123 4.123 15 C -0.142 4.142 16 C 0.065 3.935 17 C -0.498 4.498 18 H 0.076 0.924 19 C 0.041 3.959 20 N -0.820 5.820 21 Si 0.980 3.020 22 H -0.262 1.262 23 H -0.264 1.264 24 H -0.260 1.260 25 C -0.141 4.141 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.292 0.708 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 7.630 11.962 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.192 4.192 3 C -0.008 4.008 4 N -0.825 5.825 5 C -0.004 4.004 6 C -0.131 4.131 7 C -0.198 4.198 8 C -0.205 4.205 9 S 2.796 3.204 10 O -0.961 6.961 11 O -0.988 6.988 12 C -0.728 4.728 13 C -0.169 4.169 14 C -0.142 4.142 15 C -0.162 4.162 16 C 0.062 3.938 17 C -0.527 4.527 18 H 0.094 0.906 19 C -0.175 4.175 20 N -0.445 5.445 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.188 1.188 24 H -0.184 1.184 25 C -0.162 4.162 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.698 8.170 11.661 14.339 hybrid contribution -0.247 -1.505 -1.080 1.869 sum -1.945 6.665 10.581 12.656 Atomic orbital electron populations 1.21658 0.93796 1.02044 1.02734 1.22030 0.97590 0.97312 1.02224 1.21597 0.77190 0.97026 1.04999 1.57318 1.15377 1.89166 1.20629 1.21663 0.96480 0.98133 0.84152 1.21554 1.00369 0.95218 0.95963 1.21743 1.00802 1.02695 0.94545 1.21979 1.00460 1.00121 0.97892 1.01373 0.72804 0.73655 0.72574 1.93537 1.41043 1.77738 1.83776 1.93465 1.67024 1.74996 1.63347 1.30402 1.04274 1.24577 1.13590 1.20427 0.96967 0.95354 1.04161 1.21139 0.99129 0.95315 0.98603 1.21633 0.93647 1.00438 1.00478 1.18013 0.92618 0.91733 0.91429 1.19839 1.17443 0.92608 1.22778 0.90577 1.26693 0.94993 0.97546 0.98284 1.69814 1.36397 1.08067 1.30225 0.85213 0.78876 0.78004 0.77828 1.18665 1.18827 1.18360 1.20744 0.98042 0.97099 1.00335 0.92860 0.93004 0.90132 0.94386 0.90819 0.86502 0.90394 0.88020 0.90688 0.89701 0.92666 0.91531 0.91154 0.95864 0.91709 0.92329 0.85202 0.85600 0.86880 0.89731 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.91 71.98 0.71 -2.63 16 2 C -0.15 -4.25 6.26 30.59 0.19 -4.06 16 3 C 0.12 2.99 5.68 86.38 0.49 3.48 16 4 N -0.99 -28.75 2.51 -515.79 -1.29 -30.05 16 5 C 0.12 2.80 4.98 86.38 0.43 3.23 16 6 C -0.11 -2.21 3.12 -10.79 -0.03 -2.25 16 7 C -0.14 -2.11 9.19 71.98 0.66 -1.44 16 8 C -0.15 -3.70 7.62 71.98 0.55 -3.15 16 9 S 2.70 103.59 4.86 -56.49 -0.27 103.32 16 10 O -0.97 -37.73 12.68 -128.00 -1.62 -39.36 16 11 O -1.00 -43.44 15.82 -128.00 -2.02 -45.46 16 12 C -0.64 -28.65 5.96 22.22 0.13 -28.52 16 13 C -0.15 -6.42 9.53 22.46 0.21 -6.21 16 14 C -0.12 -5.54 10.02 22.22 0.22 -5.32 16 15 C -0.14 -7.31 8.70 22.73 0.20 -7.11 16 16 C 0.07 3.51 5.58 -21.29 -0.12 3.39 16 17 C -0.50 -26.60 9.05 23.46 0.21 -26.39 16 18 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 19 C 0.04 1.99 5.14 85.25 0.44 2.43 16 20 N -0.82 -41.07 10.95 21.82 0.24 -40.83 16 21 Si 0.98 37.30 29.60 68.60 2.03 39.33 16 22 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 23 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 25 C -0.14 -7.08 8.16 22.73 0.19 -6.90 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.38 7.00 -2.39 -0.02 1.36 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.12 2.09 8.05 -2.39 -0.02 2.07 16 32 H 0.08 2.22 6.91 -2.39 -0.02 2.20 16 33 H 0.10 1.88 8.11 -2.39 -0.02 1.87 16 34 H 0.07 1.88 7.61 -2.39 -0.02 1.86 16 35 H 0.08 1.49 8.08 -2.38 -0.02 1.47 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.02 0.67 5.77 -2.39 -0.01 0.66 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 1.61 7.45 -2.39 -0.02 1.60 16 42 H 0.13 4.88 7.61 -2.91 -0.02 4.86 16 43 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 44 H 0.11 5.95 6.15 -2.92 -0.02 5.93 16 45 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 46 H 0.10 5.14 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -64.08 376.39 2.49 -61.59 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.95 Total: 32.87 kcal Atomic # 6 Polarization: -85.91 SS G_CDS: 4.49 Total: -81.42 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -1.05 Total: -70.87 kcal Atomic # 8 Polarization: -81.17 SS G_CDS: -3.65 Total: -84.82 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Atomic # 16 Polarization: 103.59 SS G_CDS: -0.27 Total: 103.32 kcal Total: -64.08 2.49 -61.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619479651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.356 kcal (2) G-P(sol) polarization free energy of solvation -64.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds