Wall clock time and date at job start Tue Mar 31 2020 14:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 H 1.08998 * 109.47383 * 304.99270 * 3 2 1 5 5 C 1.53002 * 109.47166 * 65.00017 * 3 2 1 6 6 C 1.53001 * 109.46852 * 184.99732 * 3 2 1 7 7 C 1.53005 * 109.47154 * 175.00309 * 6 3 2 8 8 H 1.09002 * 109.47029 * 54.99284 * 7 6 3 9 9 C 1.52997 * 109.47436 * 175.00311 * 7 6 3 10 10 N 1.46505 * 109.46582 * 295.00230 * 7 6 3 11 11 S 1.65596 * 120.00314 * 145.00289 * 10 7 6 12 12 O 1.42094 * 106.40772 * 178.53349 * 11 10 7 13 13 O 1.42101 * 106.39766 * 311.45627 * 11 10 7 14 14 C 1.76203 * 107.21926 * 64.99294 * 11 10 7 15 15 C 1.38663 * 119.87488 * 269.73228 * 14 11 10 16 16 C 1.38617 * 120.49606 * 179.72412 * 15 14 11 17 17 C 1.37635 * 120.25069 * 0.54535 * 16 15 14 18 18 C 1.40696 * 119.74473 * 359.73466 * 17 16 15 19 19 C 1.41397 * 120.24412 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00312 * 150.21636 * 19 18 17 21 21 C 1.39948 * 119.99915 * 330.21102 * 19 18 17 22 22 N 1.30813 * 119.99759 * 161.72831 * 21 19 18 23 23 Si 1.86800 * 119.99882 * 341.73310 * 21 19 18 24 24 H 1.48497 * 109.47304 * 95.40712 * 23 21 19 25 25 H 1.48500 * 109.46937 * 215.41123 * 23 21 19 26 26 H 1.48507 * 109.47164 * 335.40740 * 23 21 19 27 27 C 1.37590 * 119.87521 * 90.00460 * 14 11 10 28 28 H 1.09005 * 109.46523 * 60.00075 * 1 2 3 29 29 H 1.08999 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47123 * 300.00589 * 1 2 3 31 31 H 1.09000 * 109.47606 * 239.99629 * 2 1 3 32 32 H 1.09006 * 109.46980 * 119.99659 * 2 1 3 33 33 H 1.08999 * 109.47589 * 59.99923 * 5 3 2 34 34 H 1.09003 * 109.47068 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.46933 * 299.99301 * 5 3 2 36 36 H 1.08992 * 109.47698 * 54.99999 * 6 3 2 37 37 H 1.08999 * 109.47299 * 294.99762 * 6 3 2 38 38 H 1.08992 * 109.47296 * 59.99380 * 9 7 6 39 39 H 1.08995 * 109.47249 * 179.97438 * 9 7 6 40 40 H 1.09008 * 109.46842 * 299.99500 * 9 7 6 41 41 H 0.97006 * 120.00025 * 324.98761 * 10 7 6 42 42 H 1.07996 * 119.74740 * 359.97438 * 15 14 11 43 43 H 1.08008 * 119.87167 * 180.25740 * 16 15 14 44 44 H 1.08000 * 120.12409 * 179.74916 * 17 16 15 45 45 H 0.97006 * 120.00286 * 180.02562 * 22 21 19 46 46 H 1.07997 * 120.12927 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 6 4.0646 2.8850 -0.2510 8 1 3.6971 3.4715 0.5910 9 6 5.5945 2.8959 -0.2513 10 7 3.5718 3.4655 -1.5026 11 16 3.1665 5.0698 -1.5681 12 8 2.7642 5.3278 -2.9063 13 8 2.3334 5.3193 -0.4443 14 6 4.6447 5.9923 -1.3063 15 6 5.0139 6.3548 -0.0198 16 6 6.1771 7.0756 0.2015 17 6 6.9732 7.4493 -0.8572 18 6 6.6054 7.0921 -2.1674 19 6 7.4158 7.4700 -3.2628 20 1 7.4480 6.8534 -4.1488 21 6 8.1760 8.6433 -3.1988 22 7 9.1772 8.8196 -4.0220 23 14 7.7611 9.9574 -1.9377 24 1 8.6099 9.7732 -0.7332 25 1 8.0132 11.2998 -2.5204 26 1 6.3302 9.8439 -1.5569 27 6 5.4253 6.3552 -2.3797 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.0698 1.5876 2.1492 34 1 1.9982 3.1544 1.3071 35 1 0.5489 2.1253 1.3968 36 1 3.8572 0.8800 -1.0111 37 1 4.0029 0.9836 0.7597 38 1 5.9619 2.3093 -1.0933 39 1 5.9505 3.9222 -0.3411 40 1 5.9611 2.4639 0.6799 41 1 3.4831 2.9102 -2.2930 42 1 4.3927 6.0698 0.8163 43 1 6.4572 7.3490 1.2081 44 1 7.8769 8.0144 -0.6828 45 1 9.7045 9.6326 -3.9775 46 1 5.1338 6.0753 -3.3812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619487412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:05 Heat of formation + Delta-G solvation = -107.895769 kcal Electronic energy + Delta-G solvation = -26349.636429 eV Core-core repulsion = 22749.878765 eV Total energy + Delta-G solvation = -3599.757664 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.71394 -39.15644 -38.20549 -36.91203 -36.06750 -35.63218 -32.55213 -31.88576 -31.65144 -30.24534 -27.64344 -27.22428 -24.74950 -24.07686 -22.70592 -22.06636 -20.77942 -20.63976 -19.75224 -18.55729 -18.05980 -17.24666 -16.92683 -16.63198 -16.09721 -16.00655 -15.75015 -15.52728 -14.85061 -14.74064 -14.68286 -14.14702 -14.11487 -13.91827 -13.63361 -13.56629 -13.36750 -13.20992 -13.19074 -13.08506 -12.87348 -12.80317 -12.64158 -12.56145 -12.43796 -12.15010 -12.00182 -11.91115 -11.77741 -11.56371 -11.41512 -11.27468 -11.10163 -11.04155 -10.39203 -9.97012 -9.67553 -8.97424 -6.59707 -0.51400 0.19321 0.65455 1.19862 1.35168 1.42142 2.02900 2.10861 2.42149 2.76905 3.30456 3.44677 3.70314 4.02774 4.06071 4.17754 4.28692 4.30291 4.34760 4.44826 4.47751 4.54464 4.62009 4.76231 4.76811 4.80945 4.84137 4.92863 5.01189 5.03561 5.07031 5.10052 5.21777 5.29181 5.30679 5.34131 5.37208 5.40228 5.44108 5.50977 5.63484 5.64502 5.67922 5.76409 5.99311 6.17990 6.24344 6.58334 6.69413 8.10945 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025540 B = 0.003314 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.067723 B = 8446.615957 C = 8506.153109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.115 4.115 3 C -0.098 4.098 4 H 0.058 0.942 5 C -0.158 4.158 6 C -0.110 4.110 7 C 0.142 3.858 8 H 0.091 0.909 9 C -0.179 4.179 10 N -1.098 6.098 11 S 2.711 3.289 12 O -1.001 7.001 13 O -0.978 6.978 14 C -0.629 4.629 15 C -0.137 4.137 16 C -0.094 4.094 17 C -0.204 4.204 18 C 0.056 3.944 19 C -0.484 4.484 20 H 0.060 0.940 21 C 0.049 3.951 22 N -0.842 5.842 23 Si 0.956 3.044 24 H -0.247 1.247 25 H -0.275 1.275 26 H -0.256 1.256 27 C -0.121 4.121 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.425 0.575 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.108 0.892 45 H 0.296 0.704 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.715 -14.917 11.617 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.153 4.153 3 C -0.117 4.117 4 H 0.077 0.923 5 C -0.215 4.215 6 C -0.149 4.149 7 C 0.036 3.964 8 H 0.109 0.891 9 C -0.237 4.237 10 N -0.860 5.860 11 S 2.803 3.197 12 O -0.991 6.991 13 O -0.967 6.967 14 C -0.717 4.717 15 C -0.157 4.157 16 C -0.113 4.113 17 C -0.224 4.224 18 C 0.053 3.947 19 C -0.513 4.513 20 H 0.078 0.922 21 C -0.166 4.166 22 N -0.468 5.468 23 Si 0.778 3.222 24 H -0.172 1.172 25 H -0.201 1.201 26 H -0.180 1.180 27 C -0.142 4.142 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.262 0.738 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.126 0.874 45 H 0.107 0.893 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.314 -14.353 11.472 21.071 hybrid contribution 1.053 0.836 -0.648 1.492 sum -9.261 -13.517 10.824 19.638 Atomic orbital electron populations 1.21855 0.96231 1.01737 1.01656 1.21549 0.95714 0.95488 1.02500 1.21209 0.95515 0.96664 0.98301 0.92349 1.22001 1.01441 1.00570 0.97456 1.21906 0.95064 0.93744 1.04150 1.21102 0.93890 0.96892 0.84513 0.89086 1.22405 0.95124 1.02657 1.03564 1.55320 1.83659 1.26522 1.20535 1.01033 0.73530 0.73032 0.72118 1.93512 1.82120 1.84963 1.38492 1.93509 1.64613 1.85023 1.53591 1.30418 1.22439 1.18421 1.00440 1.20555 0.98279 1.02680 0.94208 1.21146 0.94313 0.97143 0.98700 1.21484 1.01343 1.06499 0.93045 1.17916 0.91328 0.92489 0.92986 1.19480 1.21852 1.08084 1.01913 0.92155 1.26786 0.91655 1.00789 0.97398 1.69700 1.13522 1.27870 1.35710 0.85633 0.81122 0.76730 0.78683 1.17191 1.20134 1.17996 1.20838 0.94107 1.02653 0.96596 0.93528 0.92152 0.92601 0.91603 0.91102 0.91424 0.93222 0.92781 0.90115 0.88653 0.91728 0.93429 0.89553 0.73812 0.84064 0.83931 0.87438 0.89350 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.67 71.98 0.70 -1.49 16 2 C -0.12 -1.53 5.40 30.59 0.17 -1.37 16 3 C -0.10 -1.63 2.33 -10.79 -0.03 -1.65 16 4 H 0.06 1.14 7.62 -2.39 -0.02 1.12 16 5 C -0.16 -2.81 8.71 71.98 0.63 -2.18 16 6 C -0.11 -1.63 4.28 30.60 0.13 -1.50 16 7 C 0.14 2.91 2.78 44.99 0.12 3.03 16 8 H 0.09 1.95 5.70 -2.39 -0.01 1.94 16 9 C -0.18 -3.80 9.52 71.98 0.69 -3.11 16 10 N -1.10 -26.79 4.84 -169.37 -0.82 -27.61 16 11 S 2.71 91.91 5.72 -56.49 -0.32 91.59 16 12 O -1.00 -40.43 17.26 -128.00 -2.21 -42.64 16 13 O -0.98 -34.78 16.60 -128.00 -2.12 -36.91 16 14 C -0.63 -24.66 5.05 22.22 0.11 -24.55 16 15 C -0.14 -4.96 8.61 22.46 0.19 -4.77 16 16 C -0.09 -3.53 10.02 22.22 0.22 -3.31 16 17 C -0.20 -9.11 7.18 22.73 0.16 -8.95 16 18 C 0.06 2.80 5.10 -21.29 -0.11 2.70 16 19 C -0.48 -26.73 9.57 23.46 0.22 -26.50 16 20 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 21 C 0.05 2.59 5.40 85.26 0.46 3.05 16 22 N -0.84 -45.29 13.93 21.83 0.30 -44.99 16 23 Si 0.96 41.37 24.52 68.60 1.68 43.05 16 24 H -0.25 -9.76 6.71 99.48 0.67 -9.09 16 25 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.26 -11.49 6.86 99.48 0.68 -10.80 16 27 C -0.12 -5.59 9.26 22.73 0.21 -5.38 16 28 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.78 6.56 -2.39 -0.02 0.77 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 1.07 6.46 -2.39 -0.02 1.05 16 35 H 0.05 0.96 6.57 -2.39 -0.02 0.94 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.29 6.18 -2.39 -0.01 1.28 16 40 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.43 8.57 8.84 -96.74 -0.85 7.72 16 42 H 0.14 4.30 7.59 -2.91 -0.02 4.28 16 43 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 44 H 0.11 4.70 4.73 -2.91 -0.01 4.69 16 45 H 0.30 14.22 8.30 -92.70 -0.77 13.45 16 46 H 0.11 5.11 7.60 -2.91 -0.02 5.09 16 Total: -1.00 -65.59 371.98 0.45 -65.14 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.06 Total: 28.35 kcal Atomic # 6 Polarization: -79.86 SS G_CDS: 3.88 Total: -75.98 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -0.52 Total: -72.60 kcal Atomic # 8 Polarization: -75.21 SS G_CDS: -4.33 Total: -79.55 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.68 Total: 43.05 kcal Atomic # 16 Polarization: 91.91 SS G_CDS: -0.32 Total: 91.59 kcal Total: -65.59 0.45 -65.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619487412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.758 kcal (2) G-P(sol) polarization free energy of solvation -65.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds