Wall clock time and date at job start Tue Mar 31 2020 14:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47069 * 2 1 4 4 H 1.09000 * 109.47270 * 304.99700 * 3 2 1 5 5 C 1.53001 * 109.47355 * 65.00002 * 3 2 1 6 6 C 1.53008 * 109.47074 * 185.00024 * 3 2 1 7 7 C 1.52996 * 109.46967 * 67.17824 * 6 3 2 8 8 H 1.08999 * 109.47319 * 305.21671 * 7 6 3 9 9 C 1.53005 * 109.47027 * 185.21699 * 7 6 3 10 10 N 1.46503 * 109.47116 * 65.21596 * 7 6 3 11 11 S 1.65594 * 120.00031 * 214.99589 * 10 7 6 12 12 O 1.42104 * 106.40373 * 178.54468 * 11 10 7 13 13 O 1.42104 * 106.40478 * 311.46600 * 11 10 7 14 14 C 1.76199 * 107.21776 * 65.00171 * 11 10 7 15 15 C 1.38654 * 119.87798 * 269.72895 * 14 11 10 16 16 C 1.38614 * 120.49900 * 179.72163 * 15 14 11 17 17 C 1.37638 * 120.25207 * 0.54877 * 16 15 14 18 18 C 1.40696 * 119.74191 * 359.72696 * 17 16 15 19 19 C 1.41394 * 120.24495 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99893 * 150.29806 * 19 18 17 21 21 C 1.39946 * 120.00258 * 330.30096 * 19 18 17 22 22 N 1.30824 * 120.00012 * 162.27947 * 21 19 18 23 23 Si 1.86797 * 119.99851 * 342.28018 * 21 19 18 24 24 H 1.48502 * 109.47163 * 95.03939 * 23 21 19 25 25 H 1.48499 * 109.47371 * 215.04022 * 23 21 19 26 26 H 1.48502 * 109.47033 * 335.04191 * 23 21 19 27 27 C 1.37601 * 119.87380 * 89.99631 * 14 11 10 28 28 H 1.09002 * 109.46973 * 300.00221 * 1 2 3 29 29 H 1.09004 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46969 * 60.00132 * 1 2 3 31 31 H 1.08998 * 109.46969 * 119.99868 * 2 1 3 32 32 H 1.08992 * 109.46986 * 239.99693 * 2 1 3 33 33 H 1.09004 * 109.47063 * 54.49136 * 5 3 2 34 34 H 1.09004 * 109.47015 * 174.48793 * 5 3 2 35 35 H 1.08998 * 109.46904 * 294.48607 * 5 3 2 36 36 H 1.09002 * 109.47030 * 187.17696 * 6 3 2 37 37 H 1.08995 * 109.46875 * 307.18094 * 6 3 2 38 38 H 1.08996 * 109.47158 * 179.97438 * 9 7 6 39 39 H 1.08999 * 109.47048 * 300.00138 * 9 7 6 40 40 H 1.09001 * 109.46953 * 59.99981 * 9 7 6 41 41 H 0.96998 * 120.00112 * 35.00592 * 10 7 6 42 42 H 1.07996 * 119.74791 * 359.97438 * 15 14 11 43 43 H 1.08004 * 119.87625 * 180.25359 * 16 15 14 44 44 H 1.07993 * 120.13172 * 179.74639 * 17 16 15 45 45 H 0.96999 * 119.99836 * 180.02562 * 22 21 19 46 46 H 1.07998 * 120.12639 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1257 7 6 3.9631 0.9243 -1.5084 8 1 3.5117 -0.0541 -1.6725 9 6 5.4863 0.8031 -1.5884 10 7 3.4929 1.8575 -2.5352 11 16 2.9749 1.2846 -4.0000 12 8 2.5582 2.4177 -4.7495 13 8 3.9714 0.3778 -4.4515 14 6 1.5273 0.3251 -3.7024 15 6 1.6393 -1.0333 -3.4480 16 6 0.5095 -1.7993 -3.2065 17 6 -0.7387 -1.2198 -3.2279 18 6 -0.8649 0.1567 -3.4907 19 6 -2.1419 0.7630 -3.5148 20 1 -2.2521 1.8013 -3.2381 21 6 -3.2632 0.0180 -3.8970 22 7 -4.4639 0.4432 -3.5984 23 14 -3.0455 -1.5834 -4.8336 24 1 -3.0572 -2.7208 -3.8789 25 1 -4.1558 -1.7427 -5.8068 26 1 -1.7504 -1.5600 -5.5598 27 6 0.2896 0.9256 -3.7288 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8932 -0.5138 -0.8899 33 1 1.9870 1.5337 2.1517 34 1 2.0808 3.1204 1.3504 35 1 0.5495 2.2129 1.3512 36 1 3.9387 2.4602 0.0019 37 1 3.9934 0.8002 0.6420 38 1 5.7700 0.4322 -2.5732 39 1 5.9377 1.7815 -1.4242 40 1 5.8361 0.1087 -0.8244 41 1 3.4852 2.8109 -2.3571 42 1 2.6144 -1.4973 -3.4339 43 1 0.6087 -2.8558 -3.0053 44 1 -1.6179 -1.8192 -3.0436 45 1 -5.2411 -0.0734 -3.8631 46 1 0.2043 1.9831 -3.9310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619487413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:11 Heat of formation + Delta-G solvation = -87.493901 kcal Electronic energy + Delta-G solvation = -27552.722791 eV Core-core repulsion = 23953.849819 eV Total energy + Delta-G solvation = -3598.872972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -38.33623 -37.81927 -36.70805 -35.37901 -34.86402 -33.79385 -30.75466 -30.46835 -30.17996 -29.44608 -26.77079 -25.40964 -23.22357 -22.41278 -21.54041 -20.87942 -19.64114 -19.27743 -18.04993 -17.11324 -16.32401 -16.05378 -15.34458 -14.96838 -14.92974 -14.60790 -14.47932 -13.83374 -13.64707 -13.28843 -13.19541 -12.94393 -12.88258 -12.56815 -12.25824 -12.22588 -11.91677 -11.76050 -11.69049 -11.60472 -11.57015 -11.46999 -11.42485 -11.20881 -11.02490 -10.80531 -10.78148 -10.47268 -10.32420 -10.19409 -10.02597 -9.99370 -9.77843 -9.40328 -9.15452 -8.26973 -7.86358 -7.09679 -4.64983 0.93175 1.90973 2.40643 2.97743 3.10381 3.19117 3.46338 3.83658 4.11316 4.32809 4.66719 4.86667 4.93834 5.01425 5.14681 5.26143 5.35034 5.44258 5.50611 5.64254 5.73746 5.80013 5.82569 5.87534 5.92358 5.93084 5.99051 6.01953 6.18938 6.19790 6.21610 6.30254 6.40994 6.44965 6.48907 6.57071 6.59539 6.70424 6.85380 6.92498 7.05363 7.18544 7.20509 7.38304 7.61036 7.76250 8.17366 8.41513 8.60631 9.92224 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.005503 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.702056 B = 5087.233615 C = 6054.342323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.096 4.096 4 H 0.078 0.922 5 C -0.145 4.145 6 C -0.118 4.118 7 C 0.149 3.851 8 H 0.091 0.909 9 C -0.171 4.171 10 N -1.113 6.113 11 S 2.685 3.315 12 O -0.972 6.972 13 O -0.972 6.972 14 C -0.621 4.621 15 C -0.157 4.157 16 C -0.089 4.089 17 C -0.194 4.194 18 C 0.078 3.922 19 C -0.442 4.442 20 H 0.094 0.906 21 C 0.085 3.915 22 N -0.801 5.801 23 Si 0.905 3.095 24 H -0.269 1.269 25 H -0.287 1.287 26 H -0.243 1.243 27 C -0.100 4.100 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.413 0.587 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.287 0.713 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.863 -0.210 7.999 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.115 4.115 4 H 0.096 0.904 5 C -0.203 4.203 6 C -0.156 4.156 7 C 0.042 3.958 8 H 0.109 0.891 9 C -0.230 4.230 10 N -0.871 5.871 11 S 2.780 3.220 12 O -0.962 6.962 13 O -0.962 6.962 14 C -0.712 4.712 15 C -0.178 4.178 16 C -0.108 4.108 17 C -0.214 4.214 18 C 0.074 3.926 19 C -0.470 4.470 20 H 0.112 0.888 21 C -0.135 4.135 22 N -0.424 5.424 23 Si 0.731 3.269 24 H -0.195 1.195 25 H -0.215 1.215 26 H -0.166 1.166 27 C -0.121 4.121 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.247 0.753 42 H 0.127 0.873 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.098 0.902 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.990 -0.195 7.163 13.968 hybrid contribution -0.859 -0.675 0.159 1.104 sum 11.131 -0.871 7.322 13.352 Atomic orbital electron populations 1.21794 0.95125 1.01659 1.02262 1.21636 0.96823 0.95655 1.01564 1.21198 0.94463 0.97226 0.98568 0.90370 1.21853 1.01644 0.99667 0.97096 1.21953 0.96439 1.01584 0.95670 1.20834 0.94297 0.92760 0.87910 0.89137 1.22332 0.95481 1.02060 1.03165 1.55658 1.81192 1.16569 1.33704 1.01833 0.74338 0.73540 0.72334 1.93553 1.83452 1.51083 1.68160 1.93522 1.58123 1.65683 1.78861 1.29903 1.15782 1.07390 1.18170 1.20010 0.97794 0.91774 1.08193 1.20651 0.92969 0.97840 0.99368 1.21250 0.96110 0.96171 1.07830 1.17720 0.93270 0.91421 0.90169 1.19503 0.89165 0.99910 1.38410 0.88778 1.26133 0.94477 0.98983 0.93907 1.69673 0.99506 1.38646 1.34565 0.86406 0.79621 0.80834 0.80058 1.19500 1.21458 1.16637 1.20799 0.90800 0.99195 1.01263 0.93728 0.93289 0.91016 0.93115 0.91130 0.93172 0.93245 0.92346 0.91503 0.90924 0.91132 0.92384 0.91810 0.75317 0.87277 0.88171 0.87847 0.90236 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.67 37.16 0.36 -2.01 16 2 C -0.12 -1.60 5.29 -26.73 -0.14 -1.74 16 3 C -0.10 -1.16 2.33 -90.62 -0.21 -1.37 16 4 H 0.08 1.07 7.57 -51.93 -0.39 0.68 16 5 C -0.15 -1.58 8.81 37.16 0.33 -1.25 16 6 C -0.12 -1.18 4.26 -26.73 -0.11 -1.30 16 7 C 0.15 1.74 2.67 -67.93 -0.18 1.56 16 8 H 0.09 1.14 5.43 -51.93 -0.28 0.86 16 9 C -0.17 -1.79 9.52 37.16 0.35 -1.44 16 10 N -1.11 -14.51 4.82 -4.89 -0.02 -14.54 16 11 S 2.68 46.84 5.65 -107.50 -0.61 46.23 16 12 O -0.97 -19.59 17.27 -57.17 -0.99 -20.58 16 13 O -0.97 -18.52 16.52 -57.17 -0.94 -19.46 16 14 C -0.62 -12.11 5.81 -39.66 -0.23 -12.34 16 15 C -0.16 -2.97 7.72 -39.29 -0.30 -3.27 16 16 C -0.09 -1.74 10.02 -39.66 -0.40 -2.14 16 17 C -0.19 -4.24 7.16 -38.87 -0.28 -4.52 16 18 C 0.08 1.82 4.13 -106.82 -0.44 1.38 16 19 C -0.44 -11.14 9.58 -37.74 -0.36 -11.50 16 20 H 0.09 2.49 8.06 -52.48 -0.42 2.06 16 21 C 0.08 2.11 5.41 -17.34 -0.09 2.01 16 22 N -0.80 -20.31 13.93 55.55 0.77 -19.54 16 23 Si 0.90 19.83 24.50 -169.99 -4.16 15.66 16 24 H -0.27 -5.65 6.69 56.52 0.38 -5.27 16 25 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.24 -5.52 6.84 56.52 0.39 -5.13 16 27 C -0.10 -2.16 9.26 -38.87 -0.36 -2.52 16 28 H 0.04 0.63 6.69 -51.93 -0.35 0.29 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.33 7.12 -51.93 -0.37 0.96 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.01 5.09 -51.93 -0.26 0.75 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.69 6.84 -51.93 -0.36 0.33 16 36 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.86 7.64 -51.93 -0.40 0.46 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.41 4.49 8.84 -34.46 -0.30 4.19 16 42 H 0.11 1.87 7.59 -52.49 -0.40 1.47 16 43 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 44 H 0.10 2.27 4.67 -52.49 -0.25 2.03 16 45 H 0.29 6.62 8.30 -40.82 -0.34 6.28 16 46 H 0.12 2.49 7.60 -52.49 -0.40 2.09 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -28.59 369.59 -9.61 -38.20 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.16 Total: 8.89 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: -2.07 Total: -40.45 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.75 Total: -34.08 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.93 Total: -40.04 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.16 Total: 15.66 kcal Atomic # 16 Polarization: 46.84 SS G_CDS: -0.61 Total: 46.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.59 -9.61 -38.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619487413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.289 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds