Wall clock time and date at job start Tue Mar 31 2020 14:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47069 * 2 1 4 4 H 1.09000 * 109.47270 * 304.99700 * 3 2 1 5 5 C 1.53001 * 109.47355 * 65.00002 * 3 2 1 6 6 C 1.53008 * 109.47074 * 185.00024 * 3 2 1 7 7 C 1.52996 * 109.46967 * 67.17824 * 6 3 2 8 8 H 1.08999 * 109.47319 * 305.21671 * 7 6 3 9 9 C 1.53005 * 109.47027 * 185.21699 * 7 6 3 10 10 N 1.46503 * 109.47116 * 65.21596 * 7 6 3 11 11 S 1.65594 * 120.00031 * 214.99589 * 10 7 6 12 12 O 1.42104 * 106.40373 * 178.54468 * 11 10 7 13 13 O 1.42104 * 106.40478 * 311.46600 * 11 10 7 14 14 C 1.76199 * 107.21776 * 65.00171 * 11 10 7 15 15 C 1.38654 * 119.87798 * 269.72895 * 14 11 10 16 16 C 1.38614 * 120.49900 * 179.72163 * 15 14 11 17 17 C 1.37638 * 120.25207 * 0.54877 * 16 15 14 18 18 C 1.40696 * 119.74191 * 359.72696 * 17 16 15 19 19 C 1.41394 * 120.24495 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99893 * 150.29806 * 19 18 17 21 21 C 1.39946 * 120.00258 * 330.30096 * 19 18 17 22 22 N 1.30824 * 120.00012 * 162.27947 * 21 19 18 23 23 Si 1.86797 * 119.99851 * 342.28018 * 21 19 18 24 24 H 1.48502 * 109.47163 * 95.03939 * 23 21 19 25 25 H 1.48499 * 109.47371 * 215.04022 * 23 21 19 26 26 H 1.48502 * 109.47033 * 335.04191 * 23 21 19 27 27 C 1.37601 * 119.87380 * 89.99631 * 14 11 10 28 28 H 1.09002 * 109.46973 * 300.00221 * 1 2 3 29 29 H 1.09004 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46969 * 60.00132 * 1 2 3 31 31 H 1.08998 * 109.46969 * 119.99868 * 2 1 3 32 32 H 1.08992 * 109.46986 * 239.99693 * 2 1 3 33 33 H 1.09004 * 109.47063 * 54.49136 * 5 3 2 34 34 H 1.09004 * 109.47015 * 174.48793 * 5 3 2 35 35 H 1.08998 * 109.46904 * 294.48607 * 5 3 2 36 36 H 1.09002 * 109.47030 * 187.17696 * 6 3 2 37 37 H 1.08995 * 109.46875 * 307.18094 * 6 3 2 38 38 H 1.08996 * 109.47158 * 179.97438 * 9 7 6 39 39 H 1.08999 * 109.47048 * 300.00138 * 9 7 6 40 40 H 1.09001 * 109.46953 * 59.99981 * 9 7 6 41 41 H 0.96998 * 120.00112 * 35.00592 * 10 7 6 42 42 H 1.07996 * 119.74791 * 359.97438 * 15 14 11 43 43 H 1.08004 * 119.87625 * 180.25359 * 16 15 14 44 44 H 1.07993 * 120.13172 * 179.74639 * 17 16 15 45 45 H 0.96999 * 119.99836 * 180.02562 * 22 21 19 46 46 H 1.07998 * 120.12639 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1257 7 6 3.9631 0.9243 -1.5084 8 1 3.5117 -0.0541 -1.6725 9 6 5.4863 0.8031 -1.5884 10 7 3.4929 1.8575 -2.5352 11 16 2.9749 1.2846 -4.0000 12 8 2.5582 2.4177 -4.7495 13 8 3.9714 0.3778 -4.4515 14 6 1.5273 0.3251 -3.7024 15 6 1.6393 -1.0333 -3.4480 16 6 0.5095 -1.7993 -3.2065 17 6 -0.7387 -1.2198 -3.2279 18 6 -0.8649 0.1567 -3.4907 19 6 -2.1419 0.7630 -3.5148 20 1 -2.2521 1.8013 -3.2381 21 6 -3.2632 0.0180 -3.8970 22 7 -4.4639 0.4432 -3.5984 23 14 -3.0455 -1.5834 -4.8336 24 1 -3.0572 -2.7208 -3.8789 25 1 -4.1558 -1.7427 -5.8068 26 1 -1.7504 -1.5600 -5.5598 27 6 0.2896 0.9256 -3.7288 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8932 -0.5138 -0.8899 33 1 1.9870 1.5337 2.1517 34 1 2.0808 3.1204 1.3504 35 1 0.5495 2.2129 1.3512 36 1 3.9387 2.4602 0.0019 37 1 3.9934 0.8002 0.6420 38 1 5.7700 0.4322 -2.5732 39 1 5.9377 1.7815 -1.4242 40 1 5.8361 0.1087 -0.8244 41 1 3.4852 2.8109 -2.3571 42 1 2.6144 -1.4973 -3.4339 43 1 0.6087 -2.8558 -3.0053 44 1 -1.6179 -1.8192 -3.0436 45 1 -5.2411 -0.0734 -3.8631 46 1 0.2043 1.9831 -3.9310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619487413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:10 Heat of formation + Delta-G solvation = -105.621795 kcal Electronic energy + Delta-G solvation = -27553.508876 eV Core-core repulsion = 23953.849819 eV Total energy + Delta-G solvation = -3599.659057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.76946 -39.07265 -38.20569 -36.89737 -35.91569 -35.60454 -32.51437 -31.84615 -31.53997 -30.45690 -27.60390 -27.21103 -24.30311 -24.06636 -22.73687 -22.36126 -20.76488 -20.57639 -19.64841 -18.53035 -18.03315 -17.24038 -16.99737 -16.62025 -16.06286 -15.97957 -15.52429 -15.46514 -14.83750 -14.70032 -14.57166 -14.36804 -14.05593 -13.87568 -13.57872 -13.52359 -13.33756 -13.18750 -13.11933 -13.04597 -12.86000 -12.77851 -12.53895 -12.52299 -12.46579 -12.22547 -12.02272 -11.88488 -11.73460 -11.56081 -11.38467 -11.19938 -11.03065 -11.00777 -10.36206 -9.92833 -9.60014 -8.94321 -6.55271 -0.49380 0.24131 0.69871 1.20242 1.35695 1.41990 2.03614 2.13087 2.45637 2.79107 3.35842 3.47400 3.76674 3.99117 4.08477 4.20982 4.32677 4.34839 4.38122 4.47589 4.49828 4.53605 4.74006 4.79810 4.81215 4.86660 4.87855 4.92940 4.96574 5.07058 5.10830 5.14186 5.21129 5.27619 5.36721 5.38408 5.45511 5.48140 5.49432 5.55455 5.64935 5.67996 5.71671 5.81061 6.03324 6.20252 6.28894 6.62990 6.73652 8.14051 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.005503 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.702056 B = 5087.233615 C = 6054.342323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.098 4.098 4 H 0.053 0.947 5 C -0.143 4.143 6 C -0.109 4.109 7 C 0.140 3.860 8 H 0.083 0.917 9 C -0.169 4.169 10 N -1.098 6.098 11 S 2.708 3.292 12 O -1.002 7.002 13 O -0.981 6.981 14 C -0.626 4.626 15 C -0.135 4.135 16 C -0.091 4.091 17 C -0.196 4.196 18 C 0.067 3.933 19 C -0.479 4.479 20 H 0.058 0.942 21 C 0.051 3.949 22 N -0.844 5.844 23 Si 0.952 3.048 24 H -0.250 1.250 25 H -0.278 1.278 26 H -0.255 1.255 27 C -0.115 4.115 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.425 0.575 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.103 0.897 45 H 0.294 0.706 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.269 -1.977 9.392 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.117 4.117 4 H 0.071 0.929 5 C -0.200 4.200 6 C -0.147 4.147 7 C 0.034 3.966 8 H 0.101 0.899 9 C -0.228 4.228 10 N -0.861 5.861 11 S 2.800 3.200 12 O -0.992 6.992 13 O -0.971 6.971 14 C -0.715 4.715 15 C -0.156 4.156 16 C -0.110 4.110 17 C -0.215 4.215 18 C 0.064 3.936 19 C -0.508 4.508 20 H 0.077 0.923 21 C -0.164 4.164 22 N -0.470 5.470 23 Si 0.775 3.225 24 H -0.175 1.175 25 H -0.205 1.205 26 H -0.179 1.179 27 C -0.135 4.135 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.262 0.738 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.120 0.880 45 H 0.104 0.896 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.378 -1.971 8.564 17.711 hybrid contribution -1.655 -0.108 -0.178 1.668 sum 13.722 -2.078 8.386 16.215 Atomic orbital electron populations 1.21747 0.97316 1.00657 1.00869 1.21627 0.94696 0.96876 1.02154 1.21185 0.96097 0.96045 0.98354 0.92862 1.21820 1.00646 1.00601 0.96907 1.21921 0.94524 1.03245 0.95055 1.21113 0.95391 0.92025 0.88088 0.89934 1.22317 0.94061 1.03521 1.02920 1.55330 1.80272 1.17635 1.32815 1.01113 0.73317 0.72604 0.72945 1.93513 1.83790 1.51919 1.69984 1.93510 1.57681 1.66167 1.79755 1.30305 1.16035 1.08288 1.16871 1.20490 0.99017 0.91356 1.04698 1.21054 0.91900 0.99794 0.98275 1.21377 0.97370 0.95416 1.07359 1.17770 0.92842 0.92487 0.90494 1.19437 0.90950 0.98789 1.41648 0.92335 1.26719 0.94007 1.01475 0.94200 1.69706 1.00183 1.40418 1.36706 0.85695 0.79030 0.78430 0.79324 1.17501 1.20473 1.17871 1.20760 0.91542 0.98928 1.02314 0.92921 0.94010 0.94679 0.90821 0.92032 0.91584 0.91970 0.94122 0.89684 0.88501 0.92983 0.90943 0.89490 0.73808 0.84359 0.84465 0.87952 0.89556 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 9.67 71.98 0.70 -3.98 16 2 C -0.12 -2.88 5.29 30.59 0.16 -2.72 16 3 C -0.10 -2.16 2.33 -10.79 -0.03 -2.19 16 4 H 0.05 1.44 7.57 -2.39 -0.02 1.42 16 5 C -0.14 -2.78 8.81 71.98 0.63 -2.14 16 6 C -0.11 -1.75 4.26 30.60 0.13 -1.62 16 7 C 0.14 2.78 2.67 44.99 0.12 2.90 16 8 H 0.08 1.79 5.43 -2.39 -0.01 1.78 16 9 C -0.17 -2.84 9.52 71.98 0.69 -2.15 16 10 N -1.10 -26.29 4.82 -169.38 -0.82 -27.11 16 11 S 2.71 91.00 5.65 -56.49 -0.32 90.68 16 12 O -1.00 -40.24 17.27 -128.00 -2.21 -42.45 16 13 O -0.98 -35.09 16.52 -128.00 -2.11 -37.21 16 14 C -0.63 -23.92 5.81 22.22 0.13 -23.79 16 15 C -0.14 -4.77 7.72 22.46 0.17 -4.60 16 16 C -0.09 -3.34 10.02 22.22 0.22 -3.12 16 17 C -0.20 -8.48 7.16 22.73 0.16 -8.32 16 18 C 0.07 3.25 4.13 -21.29 -0.09 3.16 16 19 C -0.48 -25.90 9.58 23.46 0.22 -25.67 16 20 H 0.06 3.44 8.06 -2.91 -0.02 3.41 16 21 C 0.05 2.66 5.41 85.26 0.46 3.13 16 22 N -0.84 -45.22 13.93 21.83 0.30 -44.92 16 23 Si 0.95 41.29 24.50 68.60 1.68 42.97 16 24 H -0.25 -9.98 6.69 99.48 0.67 -9.31 16 25 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.25 -11.39 6.84 99.48 0.68 -10.71 16 27 C -0.11 -5.13 9.26 22.73 0.21 -4.92 16 28 H 0.05 1.52 6.69 -2.39 -0.02 1.50 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.35 7.12 -2.39 -0.02 1.33 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.62 5.09 -2.39 -0.01 1.61 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.04 0.92 6.84 -2.39 -0.02 0.91 16 36 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.09 7.64 -2.39 -0.02 1.07 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.43 8.37 8.84 -96.75 -0.85 7.51 16 42 H 0.14 4.15 7.59 -2.91 -0.02 4.13 16 43 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 44 H 0.10 4.44 4.67 -2.91 -0.01 4.42 16 45 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 46 H 0.11 4.86 7.60 -2.91 -0.02 4.84 16 Total: -1.00 -64.82 369.59 0.48 -64.34 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.06 Total: 29.72 kcal Atomic # 6 Polarization: -79.92 SS G_CDS: 3.90 Total: -76.02 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -0.51 Total: -72.03 kcal Atomic # 8 Polarization: -75.33 SS G_CDS: -4.32 Total: -79.66 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.68 Total: 42.97 kcal Atomic # 16 Polarization: 91.00 SS G_CDS: -0.32 Total: 90.68 kcal Total: -64.82 0.48 -64.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619487413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.280 kcal (2) G-P(sol) polarization free energy of solvation -64.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds