Wall clock time and date at job start Tue Mar 31 2020 14:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47252 * 2 1 4 4 H 1.09007 * 109.46915 * 55.00454 * 3 2 1 5 5 C 1.53001 * 109.47424 * 295.00432 * 3 2 1 6 6 C 1.52996 * 109.47462 * 174.99885 * 3 2 1 7 7 C 1.53003 * 109.47357 * 185.00163 * 6 3 2 8 8 H 1.08996 * 109.46979 * 305.00403 * 7 6 3 9 9 C 1.52998 * 109.46946 * 185.00250 * 7 6 3 10 10 N 1.46500 * 109.46790 * 65.00196 * 7 6 3 11 11 S 1.65602 * 119.99936 * 214.99737 * 10 7 6 12 12 O 1.42092 * 106.40182 * 178.54036 * 11 10 7 13 13 O 1.42094 * 106.40249 * 311.46344 * 11 10 7 14 14 C 1.76201 * 107.21464 * 65.00290 * 11 10 7 15 15 C 1.38661 * 119.87708 * 269.72676 * 14 11 10 16 16 C 1.38617 * 120.50176 * 179.72311 * 15 14 11 17 17 C 1.37637 * 120.24407 * 0.55275 * 16 15 14 18 18 C 1.40698 * 119.74791 * 359.72201 * 17 16 15 19 19 C 1.41394 * 120.24330 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00132 * 155.25371 * 19 18 17 21 21 C 1.39943 * 120.00569 * 335.25737 * 19 18 17 22 22 N 1.30831 * 119.99477 * 342.24528 * 21 19 18 23 23 Si 1.86797 * 120.00342 * 162.24216 * 21 19 18 24 24 H 1.48502 * 109.46852 * 90.00414 * 23 21 19 25 25 H 1.48504 * 109.46966 * 210.00122 * 23 21 19 26 26 H 1.48493 * 109.47259 * 330.00295 * 23 21 19 27 27 C 1.37603 * 119.87664 * 90.00163 * 14 11 10 28 28 H 1.08997 * 109.46913 * 299.99347 * 1 2 3 29 29 H 1.08999 * 109.47574 * 59.99616 * 1 2 3 30 30 H 1.08999 * 109.46795 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47185 * 240.00586 * 2 1 3 32 32 H 1.08999 * 109.47574 * 120.00384 * 2 1 3 33 33 H 1.08994 * 109.47247 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.46742 * 300.00183 * 5 3 2 35 35 H 1.09002 * 109.46639 * 59.99780 * 5 3 2 36 36 H 1.08996 * 109.47612 * 305.00655 * 6 3 2 37 37 H 1.08998 * 109.47068 * 65.00374 * 6 3 2 38 38 H 1.08999 * 109.47433 * 60.00541 * 9 7 6 39 39 H 1.09005 * 109.46774 * 179.97438 * 9 7 6 40 40 H 1.08996 * 109.47407 * 299.99891 * 9 7 6 41 41 H 0.97000 * 120.00094 * 35.00677 * 10 7 6 42 42 H 1.07996 * 119.74873 * 0.02562 * 15 14 11 43 43 H 1.07992 * 119.87565 * 180.25499 * 16 15 14 44 44 H 1.08000 * 120.12365 * 179.74650 * 17 16 15 45 45 H 0.97000 * 119.99634 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.12478 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0645 2.8851 0.2512 8 1 3.6970 3.4717 -0.5908 9 6 5.5944 2.8960 0.2515 10 7 3.5717 3.4656 1.5028 11 16 3.1663 5.0699 1.5683 12 8 2.6989 5.3120 2.8881 13 8 4.2488 5.7814 0.9844 14 6 1.7842 5.3026 0.5004 15 6 1.9880 5.6251 -0.8327 16 6 0.9102 5.8055 -1.6856 17 6 -0.3763 5.6769 -1.2137 18 6 -0.5952 5.3554 0.1385 19 6 -1.9125 5.2203 0.6342 20 1 -2.1018 4.6103 1.5051 21 6 -2.9710 5.8768 -0.0036 22 7 -2.7280 6.8704 -0.8194 23 14 -4.7309 5.3346 0.3096 24 1 -5.2839 6.0903 1.4622 25 1 -5.5534 5.6013 -0.8977 26 1 -4.7545 3.8813 0.6134 27 6 0.5067 5.1690 0.9938 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.9982 3.1544 -1.3071 34 1 2.0697 1.5876 -2.1491 35 1 0.5489 2.1253 -1.3967 36 1 3.8571 0.8801 1.0112 37 1 4.0029 0.9837 -0.7596 38 1 5.9611 2.4642 -0.6798 39 1 5.9504 3.9225 0.3404 40 1 5.9618 2.3094 1.0935 41 1 3.4830 2.9102 2.2931 42 1 2.9940 5.7319 -1.2105 43 1 1.0806 6.0525 -2.7229 44 1 -1.2147 5.8219 -1.8790 45 1 -3.4617 7.3252 -1.2618 46 1 0.3502 4.9217 2.0334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619487415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:22 Heat of formation + Delta-G solvation = -91.039084 kcal Electronic energy + Delta-G solvation = -27155.105954 eV Core-core repulsion = 23556.079251 eV Total energy + Delta-G solvation = -3599.026703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -38.19740 -37.58434 -36.59743 -35.26750 -34.96541 -33.84752 -30.58549 -30.08181 -29.79740 -29.25129 -26.61944 -25.48955 -23.79453 -21.89651 -21.20585 -20.85390 -19.68264 -19.15948 -17.96736 -17.01098 -15.93269 -15.90371 -15.19038 -15.05739 -14.76776 -14.70765 -14.44943 -13.77269 -13.47574 -13.37609 -13.07037 -12.95551 -12.58822 -12.49226 -12.27054 -12.01834 -11.83737 -11.61744 -11.51821 -11.47584 -11.40678 -11.37142 -11.29648 -11.06870 -11.01610 -10.93456 -10.86283 -10.59629 -10.41271 -10.31177 -10.10351 -9.78667 -9.65276 -9.33651 -9.11855 -8.02310 -7.68238 -6.92428 -4.52978 1.06800 2.21143 2.63821 2.99461 3.01156 3.07571 3.60272 3.82677 4.26821 4.44904 4.66475 4.96009 5.00110 5.05789 5.25204 5.29536 5.41427 5.42570 5.51339 5.60021 5.74405 5.80026 5.85949 5.90199 5.96436 6.00770 6.05233 6.13271 6.17278 6.25463 6.29884 6.34131 6.39786 6.46678 6.65009 6.66413 6.76440 6.79456 6.86220 7.03397 7.21333 7.28909 7.39277 7.72959 7.80809 7.94796 8.40449 8.67462 8.72367 10.03158 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.005146 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.797835 B = 5439.494433 C = 6661.819242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.095 4.095 4 H 0.078 0.922 5 C -0.155 4.155 6 C -0.117 4.117 7 C 0.150 3.850 8 H 0.091 0.909 9 C -0.171 4.171 10 N -1.115 6.115 11 S 2.684 3.316 12 O -0.976 6.976 13 O -0.975 6.975 14 C -0.628 4.628 15 C -0.148 4.148 16 C -0.118 4.118 17 C -0.116 4.116 18 C 0.095 3.905 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.076 3.924 22 N -0.793 5.793 23 Si 0.909 3.091 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.260 1.260 27 C -0.120 4.120 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.412 0.588 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.283 0.717 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.660 -11.222 -1.270 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.113 4.113 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.156 4.156 7 C 0.042 3.958 8 H 0.109 0.891 9 C -0.230 4.230 10 N -0.872 5.872 11 S 2.780 3.220 12 O -0.966 6.966 13 O -0.965 6.965 14 C -0.720 4.720 15 C -0.169 4.169 16 C -0.138 4.138 17 C -0.136 4.136 18 C 0.092 3.908 19 C -0.489 4.489 20 H 0.099 0.901 21 C -0.142 4.142 22 N -0.419 5.419 23 Si 0.733 3.267 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.142 4.142 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.245 0.755 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.140 0.860 45 H 0.094 0.906 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.016 -10.293 -1.057 13.089 hybrid contribution -1.540 -0.486 -0.104 1.619 sum 6.476 -10.779 -1.161 12.628 Atomic orbital electron populations 1.21823 0.95814 1.00894 1.02719 1.21544 0.96090 0.96514 1.01120 1.21181 0.94482 0.95873 0.99781 0.90387 1.21997 1.02096 1.01302 0.95778 1.21940 0.96124 0.95345 1.02182 1.20813 0.93653 0.95488 0.85802 0.89089 1.22333 0.95527 1.03334 1.01840 1.55684 1.82169 1.30475 1.18877 1.01793 0.74386 0.72111 0.73715 1.93534 1.82385 1.83572 1.37105 1.93509 1.53297 1.70394 1.79306 1.29699 1.14113 1.18659 1.09490 1.20035 0.97692 1.07194 0.92017 1.20772 0.93496 1.01747 0.97782 1.21594 0.95383 1.00872 0.95783 1.17633 0.92481 0.89557 0.91176 1.19581 0.91020 1.26210 1.12100 0.90077 1.25914 1.01913 0.92959 0.93442 1.69786 1.34993 1.14645 1.22430 0.86295 0.81060 0.80519 0.78853 1.19340 1.20023 1.18339 1.20706 0.90708 1.04721 0.98035 0.92485 0.92170 0.93467 0.92514 0.92595 0.91203 0.93652 0.92168 0.91610 0.90974 0.91858 0.91122 0.92450 0.75486 0.87790 0.88590 0.85963 0.90593 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.67 37.16 0.36 -1.49 16 2 C -0.12 -1.26 5.40 -26.73 -0.14 -1.41 16 3 C -0.09 -1.17 2.33 -90.62 -0.21 -1.38 16 4 H 0.08 1.10 7.62 -51.93 -0.40 0.70 16 5 C -0.15 -2.16 8.71 37.16 0.32 -1.84 16 6 C -0.12 -1.23 4.28 -26.73 -0.11 -1.34 16 7 C 0.15 1.85 2.64 -67.93 -0.18 1.67 16 8 H 0.09 1.23 5.44 -51.93 -0.28 0.95 16 9 C -0.17 -1.90 9.52 37.16 0.35 -1.55 16 10 N -1.11 -15.42 4.84 -4.89 -0.02 -15.44 16 11 S 2.68 49.76 5.65 -107.50 -0.61 49.15 16 12 O -0.98 -20.69 17.26 -57.18 -0.99 -21.68 16 13 O -0.98 -19.70 16.52 -57.18 -0.94 -20.65 16 14 C -0.63 -13.12 5.67 -39.66 -0.23 -13.35 16 15 C -0.15 -3.05 7.32 -39.29 -0.29 -3.33 16 16 C -0.12 -2.53 10.02 -39.66 -0.40 -2.93 16 17 C -0.12 -2.78 8.70 -38.87 -0.34 -3.12 16 18 C 0.10 2.36 5.57 -106.83 -0.60 1.77 16 19 C -0.46 -11.51 9.05 -37.74 -0.34 -11.86 16 20 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 21 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 22 N -0.79 -19.55 10.97 55.55 0.61 -18.94 16 23 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 26 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 27 C -0.12 -2.79 9.26 -38.87 -0.36 -3.15 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.08 4.62 -51.93 -0.24 0.84 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.93 6.57 -51.93 -0.34 0.58 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.91 7.64 -51.93 -0.40 0.51 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.41 4.76 8.84 -34.47 -0.30 4.46 16 42 H 0.10 1.95 7.59 -52.49 -0.40 1.56 16 43 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.12 3.01 6.18 -52.49 -0.32 2.69 16 45 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 46 H 0.11 2.47 7.60 -52.49 -0.40 2.07 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -29.02 375.65 -10.77 -39.79 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.20 Total: 10.85 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: -2.25 Total: -41.58 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.59 Total: -34.39 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -1.93 Total: -42.33 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 49.76 SS G_CDS: -0.61 Total: 49.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.02 -10.77 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619487415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.245 kcal (2) G-P(sol) polarization free energy of solvation -29.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds