Wall clock time and date at job start Tue Mar 31 2020 14:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47252 * 2 1 4 4 H 1.09007 * 109.46915 * 55.00454 * 3 2 1 5 5 C 1.53001 * 109.47424 * 295.00432 * 3 2 1 6 6 C 1.52996 * 109.47462 * 174.99885 * 3 2 1 7 7 C 1.53003 * 109.47357 * 185.00163 * 6 3 2 8 8 H 1.08996 * 109.46979 * 305.00403 * 7 6 3 9 9 C 1.52998 * 109.46946 * 185.00250 * 7 6 3 10 10 N 1.46500 * 109.46790 * 65.00196 * 7 6 3 11 11 S 1.65602 * 119.99936 * 214.99737 * 10 7 6 12 12 O 1.42092 * 106.40182 * 178.54036 * 11 10 7 13 13 O 1.42094 * 106.40249 * 311.46344 * 11 10 7 14 14 C 1.76201 * 107.21464 * 65.00290 * 11 10 7 15 15 C 1.38661 * 119.87708 * 269.72676 * 14 11 10 16 16 C 1.38617 * 120.50176 * 179.72311 * 15 14 11 17 17 C 1.37637 * 120.24407 * 0.55275 * 16 15 14 18 18 C 1.40698 * 119.74791 * 359.72201 * 17 16 15 19 19 C 1.41394 * 120.24330 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00132 * 155.25371 * 19 18 17 21 21 C 1.39943 * 120.00569 * 335.25737 * 19 18 17 22 22 N 1.30831 * 119.99477 * 342.24528 * 21 19 18 23 23 Si 1.86797 * 120.00342 * 162.24216 * 21 19 18 24 24 H 1.48502 * 109.46852 * 90.00414 * 23 21 19 25 25 H 1.48504 * 109.46966 * 210.00122 * 23 21 19 26 26 H 1.48493 * 109.47259 * 330.00295 * 23 21 19 27 27 C 1.37603 * 119.87664 * 90.00163 * 14 11 10 28 28 H 1.08997 * 109.46913 * 299.99347 * 1 2 3 29 29 H 1.08999 * 109.47574 * 59.99616 * 1 2 3 30 30 H 1.08999 * 109.46795 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47185 * 240.00586 * 2 1 3 32 32 H 1.08999 * 109.47574 * 120.00384 * 2 1 3 33 33 H 1.08994 * 109.47247 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.46742 * 300.00183 * 5 3 2 35 35 H 1.09002 * 109.46639 * 59.99780 * 5 3 2 36 36 H 1.08996 * 109.47612 * 305.00655 * 6 3 2 37 37 H 1.08998 * 109.47068 * 65.00374 * 6 3 2 38 38 H 1.08999 * 109.47433 * 60.00541 * 9 7 6 39 39 H 1.09005 * 109.46774 * 179.97438 * 9 7 6 40 40 H 1.08996 * 109.47407 * 299.99891 * 9 7 6 41 41 H 0.97000 * 120.00094 * 35.00677 * 10 7 6 42 42 H 1.07996 * 119.74873 * 0.02562 * 15 14 11 43 43 H 1.07992 * 119.87565 * 180.25499 * 16 15 14 44 44 H 1.08000 * 120.12365 * 179.74650 * 17 16 15 45 45 H 0.97000 * 119.99634 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.12478 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0645 2.8851 0.2512 8 1 3.6970 3.4717 -0.5908 9 6 5.5944 2.8960 0.2515 10 7 3.5717 3.4656 1.5028 11 16 3.1663 5.0699 1.5683 12 8 2.6989 5.3120 2.8881 13 8 4.2488 5.7814 0.9844 14 6 1.7842 5.3026 0.5004 15 6 1.9880 5.6251 -0.8327 16 6 0.9102 5.8055 -1.6856 17 6 -0.3763 5.6769 -1.2137 18 6 -0.5952 5.3554 0.1385 19 6 -1.9125 5.2203 0.6342 20 1 -2.1018 4.6103 1.5051 21 6 -2.9710 5.8768 -0.0036 22 7 -2.7280 6.8704 -0.8194 23 14 -4.7309 5.3346 0.3096 24 1 -5.2839 6.0903 1.4622 25 1 -5.5534 5.6013 -0.8977 26 1 -4.7545 3.8813 0.6134 27 6 0.5067 5.1690 0.9938 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.9982 3.1544 -1.3071 34 1 2.0697 1.5876 -2.1491 35 1 0.5489 2.1253 -1.3967 36 1 3.8571 0.8801 1.0112 37 1 4.0029 0.9837 -0.7596 38 1 5.9611 2.4642 -0.6798 39 1 5.9504 3.9225 0.3404 40 1 5.9618 2.3094 1.0935 41 1 3.4830 2.9102 2.2931 42 1 2.9940 5.7319 -1.2105 43 1 1.0806 6.0525 -2.7229 44 1 -1.2147 5.8219 -1.8790 45 1 -3.4617 7.3252 -1.2618 46 1 0.3502 4.9217 2.0334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619487415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:21 Heat of formation + Delta-G solvation = -107.988864 kcal Electronic energy + Delta-G solvation = -27155.840951 eV Core-core repulsion = 23556.079251 eV Total energy + Delta-G solvation = -3599.761701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.52600 -39.04416 -38.18396 -36.87701 -36.00835 -35.64835 -31.90139 -31.62673 -31.55644 -30.23818 -27.61768 -27.30644 -24.74224 -23.63526 -22.80521 -22.03346 -20.70230 -20.60432 -19.61082 -18.50966 -17.69189 -17.18313 -16.82898 -16.50131 -16.04983 -15.94316 -15.70580 -15.19643 -15.05345 -14.74826 -14.30550 -14.13080 -13.94343 -13.70024 -13.57000 -13.27403 -13.26590 -13.08881 -13.05124 -13.04109 -12.88182 -12.73386 -12.63021 -12.57366 -12.41366 -12.20439 -12.03734 -11.89512 -11.56374 -11.45761 -11.32166 -11.24047 -11.12300 -11.02270 -10.34014 -9.79344 -9.49802 -8.71733 -6.42252 -0.44378 0.45732 0.88239 1.36176 1.43541 1.50757 2.15879 2.20329 2.57638 2.83020 3.51625 3.56232 3.72204 4.05447 4.08190 4.28952 4.32174 4.36263 4.46958 4.49556 4.55145 4.63659 4.77650 4.82254 4.87670 4.93603 4.95129 5.03536 5.04144 5.10289 5.10767 5.19121 5.22862 5.31201 5.32667 5.39759 5.42496 5.45235 5.50812 5.60706 5.67508 5.71581 5.92703 5.96721 6.13867 6.22793 6.55797 6.82825 6.88407 8.26287 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.005146 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.797835 B = 5439.494433 C = 6661.819242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.096 4.096 4 H 0.053 0.947 5 C -0.154 4.154 6 C -0.108 4.108 7 C 0.140 3.860 8 H 0.078 0.922 9 C -0.169 4.169 10 N -1.097 6.097 11 S 2.710 3.290 12 O -1.003 7.003 13 O -0.987 6.987 14 C -0.631 4.631 15 C -0.140 4.140 16 C -0.118 4.118 17 C -0.135 4.135 18 C 0.069 3.931 19 C -0.497 4.497 20 H 0.076 0.924 21 C 0.038 3.962 22 N -0.825 5.825 23 Si 0.978 3.022 24 H -0.265 1.265 25 H -0.264 1.264 26 H -0.258 1.258 27 C -0.137 4.137 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.425 0.575 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.290 0.710 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.228 -13.178 -1.688 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.114 4.114 4 H 0.072 0.928 5 C -0.211 4.211 6 C -0.147 4.147 7 C 0.034 3.966 8 H 0.096 0.904 9 C -0.228 4.228 10 N -0.860 5.860 11 S 2.803 3.197 12 O -0.994 6.994 13 O -0.977 6.977 14 C -0.720 4.720 15 C -0.160 4.160 16 C -0.138 4.138 17 C -0.154 4.154 18 C 0.066 3.934 19 C -0.527 4.527 20 H 0.095 0.905 21 C -0.177 4.177 22 N -0.451 5.451 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.189 1.189 26 H -0.181 1.181 27 C -0.158 4.158 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.262 0.738 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.575 -12.242 -1.487 15.612 hybrid contribution -1.873 0.091 -0.008 1.875 sum 7.702 -12.150 -1.495 14.463 Atomic orbital electron populations 1.21837 0.97123 1.01409 1.01107 1.21512 0.94887 0.95637 1.02641 1.21169 0.96098 0.96400 0.97778 0.92804 1.21973 1.00475 1.00886 0.97740 1.21912 0.94248 0.94199 1.04328 1.21091 0.94871 0.96407 0.84251 0.90364 1.22317 0.93934 1.02630 1.03916 1.55304 1.81395 1.28883 1.20392 1.00996 0.73235 0.73158 0.72335 1.93492 1.82723 1.84803 1.38358 1.93493 1.52983 1.71812 1.79398 1.30119 1.14432 1.17224 1.10239 1.20349 0.98524 1.05390 0.91768 1.21053 0.92720 1.00716 0.99270 1.21557 0.96131 1.02327 0.95424 1.17932 0.93163 0.90276 0.91997 1.19813 0.92163 1.27624 1.13059 0.90539 1.26695 1.05642 0.92452 0.92888 1.69828 1.36502 1.15453 1.23327 0.85258 0.75902 0.79950 0.79013 1.18948 1.18860 1.18148 1.20713 0.91481 1.05866 0.97753 0.94236 0.93720 0.91839 0.90924 0.90965 0.92913 0.91612 0.94743 0.89465 0.88598 0.89529 0.93169 0.90734 0.73825 0.85457 0.85978 0.87328 0.89888 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 9.67 71.98 0.70 -3.00 16 2 C -0.11 -2.15 5.40 30.59 0.17 -1.98 16 3 C -0.10 -2.22 2.33 -10.79 -0.03 -2.25 16 4 H 0.05 1.51 7.62 -2.38 -0.02 1.49 16 5 C -0.15 -4.20 8.71 71.98 0.63 -3.58 16 6 C -0.11 -1.89 4.28 30.59 0.13 -1.76 16 7 C 0.14 3.10 2.64 44.99 0.12 3.22 16 8 H 0.08 1.96 5.44 -2.39 -0.01 1.95 16 9 C -0.17 -3.16 9.52 71.98 0.69 -2.48 16 10 N -1.10 -28.60 4.84 -169.39 -0.82 -29.42 16 11 S 2.71 99.06 5.65 -56.49 -0.32 98.74 16 12 O -1.00 -42.67 17.26 -128.00 -2.21 -44.88 16 13 O -0.99 -38.71 16.52 -128.00 -2.11 -40.82 16 14 C -0.63 -26.65 5.67 22.22 0.13 -26.53 16 15 C -0.14 -5.69 7.32 22.46 0.16 -5.52 16 16 C -0.12 -5.09 10.02 22.22 0.22 -4.87 16 17 C -0.13 -6.67 8.70 22.73 0.20 -6.47 16 18 C 0.07 3.62 5.57 -21.29 -0.12 3.50 16 19 C -0.50 -26.17 9.05 23.46 0.21 -25.96 16 20 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 21 C 0.04 1.89 5.14 85.26 0.44 2.33 16 22 N -0.83 -41.99 10.97 21.83 0.24 -41.75 16 23 Si 0.98 37.41 29.59 68.60 2.03 39.44 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 25 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 26 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 27 C -0.14 -6.61 9.26 22.73 0.21 -6.39 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.04 1.16 6.57 -2.39 -0.02 1.15 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.60 4.62 -2.39 -0.01 1.59 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.03 1.09 6.57 -2.39 -0.02 1.07 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.05 1.16 7.64 -2.38 -0.02 1.15 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.43 9.01 8.84 -96.74 -0.85 8.15 16 42 H 0.13 4.57 7.59 -2.91 -0.02 4.55 16 43 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 44 H 0.11 5.61 6.18 -2.91 -0.02 5.59 16 45 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 46 H 0.10 4.94 7.60 -2.91 -0.02 4.92 16 Total: -1.00 -64.71 375.65 0.78 -63.94 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.12 Total: 36.49 kcal Atomic # 6 Polarization: -85.59 SS G_CDS: 3.85 Total: -81.74 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -0.58 Total: -71.17 kcal Atomic # 8 Polarization: -81.38 SS G_CDS: -4.32 Total: -85.70 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Atomic # 16 Polarization: 99.06 SS G_CDS: -0.32 Total: 98.74 kcal Total: -64.71 0.78 -63.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619487415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.053 kcal (2) G-P(sol) polarization free energy of solvation -64.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds