Wall clock time and date at job start Tue Mar 31 2020 16:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46902 * 2 1 4 4 C 1.53001 * 109.46818 * 120.00473 * 2 1 3 5 5 C 1.53009 * 109.46619 * 175.00201 * 4 2 1 6 6 C 1.52997 * 109.46866 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47418 * 54.99902 * 6 5 4 8 8 C 1.52994 * 109.47143 * 174.99803 * 6 5 4 9 9 N 1.46499 * 109.47316 * 294.99886 * 6 5 4 10 10 S 1.65604 * 120.00205 * 143.85228 * 9 6 5 11 11 O 1.42100 * 106.40300 * 311.69758 * 10 9 6 12 12 O 1.42090 * 106.40390 * 178.77270 * 10 9 6 13 13 C 1.76205 * 107.21618 * 65.23524 * 10 9 6 14 14 C 1.37642 * 120.13023 * 244.27033 * 13 10 9 15 15 C 1.38610 * 120.24877 * 180.31873 * 14 13 10 16 16 C 1.38658 * 120.49902 * 359.67301 * 15 14 13 17 17 C 1.37598 * 120.25366 * 0.02562 * 16 15 14 18 18 C 1.40694 * 120.12563 * 63.96369 * 13 10 9 19 19 C 1.41397 * 120.24803 * 359.97438 * 18 13 10 20 20 H 1.07998 * 119.99949 * 335.63019 * 19 18 13 21 21 C 1.39942 * 120.00005 * 155.62713 * 19 18 13 22 22 N 1.30821 * 120.00129 * 331.84199 * 21 19 18 23 23 Si 1.86797 * 119.99849 * 151.84545 * 21 19 18 24 24 H 1.48497 * 109.47497 * 269.99990 * 23 21 19 25 25 H 1.48504 * 109.47338 * 30.00020 * 23 21 19 26 26 H 1.48509 * 109.47216 * 149.99816 * 23 21 19 27 27 H 1.09003 * 109.47200 * 299.99459 * 1 2 3 28 28 H 1.08996 * 109.47467 * 60.00395 * 1 2 3 29 29 H 1.09008 * 109.46637 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47063 * 240.00060 * 2 1 3 31 31 H 1.09000 * 109.47441 * 299.99994 * 3 2 1 32 32 H 1.08999 * 109.47212 * 60.00152 * 3 2 1 33 33 H 1.09001 * 109.47127 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47434 * 55.00210 * 4 2 1 35 35 H 1.08999 * 109.47002 * 294.99268 * 4 2 1 36 36 H 1.09000 * 109.47285 * 59.99495 * 5 4 2 37 37 H 1.08999 * 109.46672 * 299.99269 * 5 4 2 38 38 H 1.09006 * 109.47125 * 300.00239 * 8 6 5 39 39 H 1.09001 * 109.47394 * 59.99899 * 8 6 5 40 40 H 1.08999 * 109.47878 * 180.02562 * 8 6 5 41 41 H 0.96998 * 120.00320 * 323.85732 * 9 6 5 42 42 H 1.08003 * 119.87434 * 0.02562 * 14 13 10 43 43 H 1.08001 * 119.74972 * 179.69650 * 15 14 13 44 44 H 1.08002 * 119.87058 * 180.02562 * 16 15 14 45 45 H 1.07991 * 120.12877 * 180.02562 * 17 16 15 46 46 H 0.97002 * 120.00573 * 355.66141 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0749 -1.5519 2.4374 7 1 3.5733 -2.5150 2.5315 8 6 5.5842 -1.7725 2.3185 9 7 3.7924 -0.7364 3.6211 10 16 3.3716 -1.4651 5.0475 11 8 2.3573 -2.4089 4.7320 12 8 3.1942 -0.4209 5.9946 13 6 4.7663 -2.3960 5.5888 14 6 4.6899 -3.7676 5.6761 15 6 5.7834 -4.5018 6.1079 16 6 6.9672 -3.8660 6.4500 17 6 7.0684 -2.4964 6.3646 18 6 5.9645 -1.7408 5.9273 19 6 6.0570 -0.3328 5.8348 20 1 5.4056 0.2082 5.1645 21 6 6.9926 0.3594 6.6119 22 7 7.3787 -0.1307 7.7617 23 14 7.6900 1.9834 6.0073 24 1 8.9141 1.7289 5.2060 25 1 6.6806 2.6723 5.1636 26 1 8.0298 2.8404 7.1716 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6054 -1.7199 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 3.9995 0.1675 1.1420 37 1 3.8532 -1.3940 0.3002 38 1 5.7945 -2.3792 1.4377 39 1 6.0859 -0.8094 2.2244 40 1 5.9476 -2.2864 3.2084 41 1 3.8516 0.2304 3.5696 42 1 3.7729 -4.2732 5.4117 43 1 5.7130 -5.5772 6.1781 44 1 7.8131 -4.4480 6.7849 45 1 7.9914 -2.0033 6.6311 46 1 6.9708 -0.9410 8.1052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619572028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:52 Heat of formation + Delta-G solvation = -116.421722 kcal Electronic energy + Delta-G solvation = -26962.308628 eV Core-core repulsion = 23362.181251 eV Total energy + Delta-G solvation = -3600.127377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -39.62328 -38.84899 -38.02907 -36.70351 -36.43605 -35.89265 -32.02620 -31.66287 -31.21981 -29.71798 -27.95969 -27.18372 -24.74902 -23.54498 -23.00569 -21.99757 -20.72349 -20.45098 -20.06964 -18.57407 -17.89068 -17.17636 -16.65384 -16.34477 -15.97571 -15.75551 -15.44736 -15.19450 -15.00451 -14.80445 -14.50915 -14.35627 -14.06967 -13.83940 -13.52737 -13.32580 -13.23558 -13.04655 -13.00123 -12.95244 -12.86373 -12.75325 -12.51395 -12.40351 -12.24009 -11.99018 -11.97727 -11.89579 -11.60680 -11.48961 -11.30121 -11.27731 -11.14740 -10.96473 -10.23195 -9.95646 -9.65750 -9.36931 -6.69158 -0.16928 0.45887 0.89124 1.49747 1.63521 1.77071 2.27830 2.33046 2.55995 2.96832 3.35156 3.71244 3.81210 4.02650 4.07422 4.22270 4.23313 4.33438 4.34302 4.37607 4.55235 4.63974 4.67938 4.80336 4.85246 4.86809 4.91746 4.94142 5.02598 5.06757 5.10773 5.12719 5.21943 5.28639 5.30893 5.38481 5.41198 5.50768 5.53402 5.60132 5.61714 5.64252 5.66859 5.86588 5.99281 6.17517 6.28785 6.55457 6.77031 7.85081 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.004989 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.588244 B = 5611.032736 C = 6704.230315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.121 4.121 5 C -0.113 4.113 6 C 0.150 3.850 7 H 0.076 0.924 8 C -0.169 4.169 9 N -1.101 6.101 10 S 2.717 3.283 11 O -1.010 7.010 12 O -1.007 7.007 13 C -0.794 4.794 14 C 0.000 4.000 15 C -0.265 4.265 16 C -0.053 4.053 17 C -0.239 4.239 18 C 0.151 3.849 19 C -0.519 4.519 20 H 0.094 0.906 21 C 0.010 3.990 22 N -0.790 5.790 23 Si 1.107 2.893 24 H -0.254 1.254 25 H -0.252 1.252 26 H -0.273 1.273 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.419 0.581 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.099 0.901 46 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 1.494 -15.057 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.159 4.159 5 C -0.152 4.152 6 C 0.043 3.957 7 H 0.094 0.906 8 C -0.228 4.228 9 N -0.862 5.862 10 S 2.813 3.187 11 O -1.001 7.001 12 O -0.998 6.998 13 C -0.888 4.888 14 C -0.020 4.020 15 C -0.285 4.285 16 C -0.071 4.071 17 C -0.259 4.259 18 C 0.146 3.854 19 C -0.546 4.546 20 H 0.112 0.888 21 C -0.211 4.211 22 N -0.410 5.410 23 Si 0.923 3.077 24 H -0.178 1.178 25 H -0.175 1.175 26 H -0.198 1.198 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.254 0.746 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.117 0.883 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.368 2.544 -14.204 14.818 hybrid contribution -0.336 -1.484 0.405 1.575 sum -3.705 1.060 -13.799 14.327 Atomic orbital electron populations 1.21872 0.95464 1.01685 1.01725 1.21108 0.95608 0.96583 0.97858 1.21909 1.01571 0.95633 1.01610 1.21702 0.95686 1.00443 0.98047 1.21895 0.95395 1.01801 0.96080 1.20900 0.95734 0.93924 0.85145 0.90573 1.22292 0.95489 1.02772 1.02204 1.55343 1.87994 1.17709 1.25128 1.00378 0.73463 0.72481 0.72369 1.93421 1.57062 1.64633 1.84935 1.93479 1.86945 1.57667 1.61660 1.30022 1.17343 1.06382 1.35064 1.20604 0.97668 0.92088 0.91590 1.20811 0.94718 0.99297 1.13709 1.21154 0.97363 0.94130 0.94492 1.21356 0.98484 0.94458 1.11600 1.17165 0.89159 0.92991 0.86050 1.21138 1.18601 0.92252 1.22571 0.88828 1.28509 0.92802 1.07643 0.92116 1.70547 1.35719 1.19738 1.15027 0.83161 0.77683 0.69820 0.77018 1.17844 1.17548 1.19835 0.93593 0.91704 0.92867 0.90173 0.92045 0.93550 0.91892 0.92578 0.93332 0.89991 0.88658 0.89874 0.91575 0.94195 0.74577 0.86210 0.85550 0.85885 0.88315 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.19 71.98 0.66 -1.95 16 2 C -0.09 -1.64 2.92 -10.79 -0.03 -1.67 16 3 C -0.15 -2.47 8.95 71.98 0.64 -1.83 16 4 C -0.12 -2.70 4.57 30.60 0.14 -2.56 16 5 C -0.11 -2.34 4.58 30.60 0.14 -2.20 16 6 C 0.15 4.20 2.92 44.99 0.13 4.33 16 7 H 0.08 2.29 7.49 -2.39 -0.02 2.27 16 8 C -0.17 -4.76 9.52 71.98 0.69 -4.07 16 9 N -1.10 -37.15 4.03 -169.40 -0.68 -37.83 16 10 S 2.72 118.73 4.93 -56.49 -0.28 118.45 16 11 O -1.01 -45.62 16.30 -128.00 -2.09 -47.70 16 12 O -1.01 -51.23 16.58 -128.00 -2.12 -53.36 16 13 C -0.79 -37.25 4.98 22.73 0.11 -37.14 16 14 C 0.00 0.01 9.53 22.22 0.21 0.22 16 15 C -0.27 -10.92 10.05 22.46 0.23 -10.70 16 16 C -0.05 -2.25 10.02 22.22 0.22 -2.02 16 17 C -0.24 -11.52 8.00 22.73 0.18 -11.34 16 18 C 0.15 7.51 4.91 -21.29 -0.10 7.40 16 19 C -0.52 -25.63 7.70 23.46 0.18 -25.45 16 20 H 0.09 4.35 5.60 -2.91 -0.02 4.34 16 21 C 0.01 0.46 4.88 85.26 0.42 0.87 16 22 N -0.79 -40.59 12.35 21.83 0.27 -40.32 16 23 Si 1.11 40.08 30.01 68.60 2.06 42.14 16 24 H -0.25 -8.44 7.11 99.48 0.71 -7.74 16 25 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 26 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.98 6.57 -2.39 -0.02 0.96 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.24 7.75 -2.39 -0.02 1.22 16 36 H 0.08 1.54 6.57 -2.39 -0.02 1.53 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 40 H 0.04 1.40 6.72 -2.39 -0.02 1.38 16 41 H 0.42 12.69 8.54 -96.75 -0.83 11.87 16 42 H 0.12 4.88 7.33 -2.91 -0.02 4.85 16 43 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 44 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 45 H 0.10 4.89 6.50 -2.92 -0.02 4.87 16 46 H 0.29 15.55 6.78 -92.71 -0.63 14.92 16 Total: -1.00 -63.51 375.59 1.26 -62.25 By element: Atomic # 1 Polarization: 44.19 SS G_CDS: 0.28 Total: 44.47 kcal Atomic # 6 Polarization: -91.92 SS G_CDS: 3.82 Total: -88.10 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -0.41 Total: -78.15 kcal Atomic # 8 Polarization: -96.85 SS G_CDS: -4.21 Total: -101.06 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.06 Total: 42.14 kcal Atomic # 16 Polarization: 118.73 SS G_CDS: -0.28 Total: 118.45 kcal Total: -63.51 1.26 -62.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.176 kcal (2) G-P(sol) polarization free energy of solvation -63.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds