Wall clock time and date at job start Tue Mar 31 2020 16:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.77223 * 2 1 4 4 C 1.53422 * 109.77506 * 239.25111 * 2 1 3 5 5 N 1.46761 * 108.74795 * 177.01833 * 4 2 1 6 6 C 1.46897 * 110.99693 * 285.58815 * 5 4 2 7 7 C 1.50700 * 109.47251 * 169.99848 * 6 5 4 8 8 C 1.38299 * 119.93299 * 269.72774 * 7 6 5 9 9 C 1.38100 * 120.06924 * 179.72060 * 8 7 6 10 10 C 1.38874 * 119.92676 * 0.55016 * 9 8 7 11 11 O 1.35753 * 120.06459 * 179.74164 * 10 9 8 12 12 C 1.34836 * 116.99997 * 174.44086 * 11 10 9 13 13 H 1.07998 * 119.99905 * 5.05730 * 12 11 10 14 14 C 1.38651 * 119.99893 * 185.05945 * 12 11 10 15 15 N 1.31556 * 120.00492 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99551 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46841 * 90.00267 * 16 14 12 18 18 H 1.48502 * 109.46993 * 209.99887 * 16 14 12 19 19 H 1.48497 * 109.47470 * 329.99977 * 16 14 12 20 20 C 1.38873 * 119.86749 * 359.72449 * 10 9 8 21 21 C 1.38104 * 119.92977 * 0.02562 * 20 10 9 22 22 C 1.40230 * 111.89611 * 50.20891 * 5 4 2 23 23 C 1.39142 * 118.51132 * 160.27035 * 22 5 4 24 24 C 1.38066 * 120.23918 * 179.59017 * 23 22 5 25 25 C 1.38251 * 120.11766 * 359.97017 * 24 23 22 26 26 C 1.38183 * 120.02823 * 0.11218 * 25 24 23 27 27 C 1.38774 * 120.20480 * 359.97438 * 26 25 24 28 28 O 1.36148 * 118.75025 * 179.78676 * 27 26 25 29 29 H 1.08999 * 109.47460 * 180.74707 * 1 2 3 30 30 H 1.09002 * 109.47129 * 300.74800 * 1 2 3 31 31 H 1.09003 * 109.47172 * 60.74472 * 1 2 3 32 32 H 1.09000 * 109.61797 * 296.83675 * 4 2 1 33 33 H 1.09001 * 109.61728 * 57.19302 * 4 2 1 34 34 H 1.08999 * 109.47396 * 290.00166 * 6 5 4 35 35 H 1.09007 * 109.47429 * 49.99840 * 6 5 4 36 36 H 1.08006 * 119.96296 * 0.02562 * 8 7 6 37 37 H 1.07994 * 120.03278 * 180.27317 * 9 8 7 38 38 H 0.96997 * 120.00257 * 180.02562 * 15 14 12 39 39 H 1.07997 * 120.03880 * 179.97438 * 20 10 9 40 40 H 1.08001 * 119.96465 * 179.97438 * 21 20 10 41 41 H 1.08008 * 119.88041 * 359.55052 * 23 22 5 42 42 H 1.08002 * 119.93936 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.98948 * 180.14003 * 25 24 23 44 44 H 1.07992 * 119.89648 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8986 1.0257 0.0000 4 6 2.0490 -0.7382 -1.2408 5 7 3.5146 -0.6629 -1.2557 6 6 3.9688 0.6796 -1.6420 7 6 5.4537 0.7934 -1.4111 8 6 5.9303 1.2405 -0.1922 9 6 7.2905 1.3403 0.0245 10 6 8.1799 1.0021 -0.9871 11 8 9.5174 1.1042 -0.7789 12 6 10.3257 0.6519 -1.7589 13 1 9.9034 0.3077 -2.6914 14 6 11.6990 0.6287 -1.5693 15 7 12.2135 1.0475 -0.4332 16 14 12.8187 0.0015 -2.9266 17 1 13.2093 1.1314 -3.8077 18 1 14.0356 -0.6010 -2.3256 19 1 12.1014 -1.0243 -3.7256 20 6 7.6981 0.5589 -2.2119 21 6 6.3368 0.4562 -2.4206 22 6 4.0705 -1.0476 -0.0271 23 6 5.4079 -1.4303 0.0061 24 6 5.9938 -1.8076 1.1979 25 6 5.2538 -1.8063 2.3657 26 6 3.9246 -1.4294 2.3417 27 6 3.3278 -1.0505 1.1474 28 8 2.0153 -0.6889 1.1571 29 1 -0.3634 -1.0275 0.0134 30 1 -0.3633 0.5254 0.8832 31 1 -0.3634 0.5022 -0.8966 32 1 1.7366 -1.7818 -1.2031 33 1 1.6493 -0.2688 -2.1397 34 1 3.7513 0.8473 -2.6968 35 1 3.4494 1.4260 -1.0408 36 1 5.2379 1.5071 0.5927 37 1 7.6621 1.6853 0.9780 38 1 13.1742 1.0316 -0.3007 39 1 8.3872 0.2955 -3.0006 40 1 5.9615 0.1120 -3.3730 41 1 5.9895 -1.4328 -0.9040 42 1 7.0321 -2.1041 1.2180 43 1 5.7148 -2.0997 3.2972 44 1 3.3486 -1.4288 3.2552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732214139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:33 Heat of formation + Delta-G solvation = -12.125571 kcal Electronic energy + Delta-G solvation = -27776.721742 eV Core-core repulsion = 24045.673035 eV Total energy + Delta-G solvation = -3731.048708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.35857 -40.73570 -38.89431 -38.38611 -37.02181 -34.31584 -33.48883 -31.90123 -31.61275 -31.30198 -29.61194 -27.77876 -26.82170 -25.30248 -24.08701 -23.59548 -23.34131 -22.31363 -20.72642 -19.85018 -19.05410 -18.83688 -17.84887 -17.29632 -16.52209 -16.44961 -16.26875 -15.93408 -15.87846 -15.56822 -15.43516 -15.08317 -14.88731 -14.63806 -14.49354 -14.34100 -13.88603 -13.67309 -13.63915 -13.44256 -13.11462 -12.98514 -12.85985 -12.56346 -12.47449 -12.43254 -12.28132 -12.13431 -12.01879 -11.91766 -11.67294 -11.17040 -10.77798 -10.29124 -9.74802 -9.25547 -8.89925 -8.82186 -8.46239 -6.14037 0.37496 0.45408 0.63069 0.69316 1.35631 1.44220 1.52742 2.17918 2.24335 2.60424 2.85910 2.95897 3.21620 3.50098 3.52193 3.83234 3.88242 3.90006 4.03927 4.06750 4.16367 4.21281 4.28854 4.42232 4.44710 4.51832 4.55827 4.58828 4.65285 4.76141 4.80765 4.81877 4.93815 5.05365 5.07737 5.15897 5.21578 5.27312 5.31465 5.36359 5.55705 5.64352 5.71915 5.72671 5.79247 5.97087 6.03693 6.11609 6.19494 6.53396 6.98761 7.79572 8.76832 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.003315 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.040557 B = 8443.260823 C = 9055.863096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.040 3.960 3 H 0.071 0.929 4 C 0.022 3.978 5 N -0.490 5.490 6 C 0.111 3.889 7 C -0.161 4.161 8 C -0.043 4.043 9 C -0.196 4.196 10 C 0.126 3.874 11 O -0.231 6.231 12 C -0.411 4.411 13 H 0.102 0.898 14 C -0.022 4.022 15 N -0.920 5.920 16 Si 1.016 2.984 17 H -0.263 1.263 18 H -0.273 1.273 19 H -0.253 1.253 20 C -0.240 4.240 21 C -0.047 4.047 22 C 0.024 3.976 23 C -0.068 4.068 24 C -0.155 4.155 25 C -0.095 4.095 26 C -0.148 4.148 27 C 0.077 3.923 28 O -0.322 6.322 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.052 0.948 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.272 0.728 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.146 0.854 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.047 -3.622 -1.643 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.017 4.017 3 H 0.089 0.911 4 C -0.105 4.105 5 N -0.207 5.207 6 C -0.012 4.012 7 C -0.162 4.162 8 C -0.062 4.062 9 C -0.216 4.216 10 C 0.076 3.924 11 O -0.137 6.137 12 C -0.487 4.487 13 H 0.120 0.880 14 C -0.219 4.219 15 N -0.559 5.559 16 Si 0.835 3.165 17 H -0.188 1.188 18 H -0.197 1.197 19 H -0.176 1.176 20 C -0.260 4.260 21 C -0.066 4.066 22 C -0.072 4.072 23 C -0.088 4.088 24 C -0.174 4.174 25 C -0.113 4.113 26 C -0.167 4.167 27 C 0.030 3.970 28 O -0.237 6.237 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.145 0.855 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.081 0.919 39 H 0.137 0.863 40 H 0.159 0.841 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.164 0.836 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.739 -3.838 -1.639 23.119 hybrid contribution 1.109 0.399 0.208 1.197 sum -21.630 -3.439 -1.430 21.948 Atomic orbital electron populations 1.21748 0.89339 1.03859 1.04296 1.23340 0.97960 0.95110 0.85283 0.91097 1.23119 0.85338 1.02705 0.99344 1.59685 1.09080 1.26212 1.25728 1.21154 0.90366 0.87171 1.02536 1.19379 0.95304 1.07129 0.94418 1.20560 0.92844 0.96364 0.96387 1.20207 0.92836 1.10428 0.98108 1.19799 0.84394 0.93834 0.94397 1.83949 1.12692 1.72973 1.44134 1.21801 0.88002 1.43379 0.95488 0.88045 1.26545 0.97772 0.96972 1.00622 1.70183 1.13264 1.46172 1.26234 0.84624 0.76836 0.78828 0.76185 1.18828 1.19733 1.17625 1.21218 0.97020 1.10208 0.97518 1.20860 0.90964 0.95702 0.99039 1.18668 0.94468 1.06003 0.88088 1.20963 0.93342 0.96089 0.98377 1.21058 1.00126 1.02940 0.93227 1.21101 0.93013 0.98627 0.98597 1.20602 0.95189 1.04760 0.96187 1.19104 0.84669 0.99816 0.93437 1.86259 1.21818 1.72742 1.42843 0.91307 0.91517 0.87748 0.89353 0.85528 0.87173 0.93003 0.86481 0.87736 0.91899 0.86290 0.84135 0.86960 0.86881 0.83607 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.60 71.98 0.69 -0.78 16 2 C 0.04 0.71 3.45 30.73 0.11 0.81 16 3 H 0.07 1.27 6.58 -2.39 -0.02 1.25 16 4 C 0.02 0.38 5.31 86.47 0.46 0.84 16 5 N -0.49 -11.69 4.82 -698.27 -3.37 -15.06 16 6 C 0.11 2.54 5.25 85.56 0.45 2.99 16 7 C -0.16 -4.95 3.24 -19.83 -0.06 -5.01 16 8 C -0.04 -1.48 7.04 22.25 0.16 -1.33 16 9 C -0.20 -8.42 9.99 22.39 0.22 -8.20 16 10 C 0.13 6.19 6.65 22.57 0.15 6.34 16 11 O -0.23 -13.80 9.76 -22.83 -0.22 -14.02 16 12 C -0.41 -23.69 9.49 67.92 0.64 -23.04 16 13 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 14 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 15 N -0.92 -56.43 13.67 21.61 0.30 -56.14 16 16 Si 1.02 42.72 29.55 68.60 2.03 44.75 16 17 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 20 C -0.24 -10.17 9.17 22.39 0.21 -9.97 16 21 C -0.05 -1.57 8.54 22.25 0.19 -1.38 16 22 C 0.02 0.69 4.43 38.19 0.17 0.86 16 23 C -0.07 -2.21 6.49 22.45 0.15 -2.06 16 24 C -0.15 -4.90 10.03 22.23 0.22 -4.68 16 25 C -0.10 -2.55 10.04 22.26 0.22 -2.33 16 26 C -0.15 -3.88 9.94 22.38 0.22 -3.66 16 27 C 0.08 2.12 6.47 22.57 0.15 2.27 16 28 O -0.32 -7.89 10.06 -95.23 -0.96 -8.85 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.13 1.37 8.02 -2.39 -0.02 1.35 16 34 H 0.11 1.99 8.08 -2.39 -0.02 1.97 16 35 H 0.05 1.09 6.39 -2.38 -0.02 1.08 16 36 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 40 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 41 H 0.11 4.06 6.05 -2.91 -0.02 4.04 16 42 H 0.11 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 44 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -71.04 355.01 3.60 -67.44 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 1.01 Total: 30.95 kcal Atomic # 6 Polarization: -53.89 SS G_CDS: 4.81 Total: -49.08 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -3.07 Total: -71.20 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -1.18 Total: -22.87 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -71.04 3.60 -67.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732214139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.318 kcal (2) G-P(sol) polarization free energy of solvation -71.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds