Wall clock time and date at job start Tue Mar 31 2020 16:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.75553 * 2 1 4 4 C 1.53416 * 109.61265 * 239.55176 * 2 1 3 5 5 O 1.43145 * 107.89935 * 177.02699 * 4 2 1 6 6 C 1.36149 * 116.67460 * 45.34136 * 5 4 2 7 7 C 1.38780 * 118.74225 * 165.33798 * 6 5 4 8 8 C 1.38169 * 120.20404 * 179.54445 * 7 6 5 9 9 C 1.38253 * 120.02960 * 359.97438 * 8 7 6 10 10 C 1.38065 * 120.11833 * 0.07741 * 9 8 7 11 11 C 1.38964 * 121.38302 * 344.98467 * 6 5 4 12 12 N 1.39855 * 121.85948 * 0.58430 * 11 6 5 13 13 C 1.46900 * 111.00172 * 104.70282 * 12 11 6 14 14 C 1.50702 * 109.47208 * 75.46340 * 13 12 11 15 15 C 1.38303 * 119.93418 * 270.27933 * 14 13 12 16 16 C 1.38095 * 120.07063 * 180.23462 * 15 14 13 17 17 C 1.38881 * 119.92549 * 359.46953 * 16 15 14 18 18 O 1.35760 * 120.06396 * 180.25356 * 17 16 15 19 19 C 1.34827 * 117.00014 * 354.56884 * 18 17 16 20 20 H 1.08000 * 120.00347 * 355.16532 * 19 18 17 21 21 C 1.38657 * 119.99940 * 175.16927 * 19 18 17 22 22 N 1.31561 * 119.99926 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00073 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46943 * 59.99928 * 23 21 19 25 25 H 1.48497 * 109.47007 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47213 * 300.00173 * 23 21 19 27 27 C 1.38872 * 119.86548 * 0.27763 * 17 16 15 28 28 C 1.38103 * 119.93335 * 359.97438 * 27 17 16 29 29 H 1.08998 * 109.47594 * 289.59942 * 1 2 3 30 30 H 1.09002 * 109.47067 * 49.60271 * 1 2 3 31 31 H 1.09001 * 109.47466 * 169.59891 * 1 2 3 32 32 H 1.09002 * 109.77797 * 57.43068 * 4 2 1 33 33 H 1.08996 * 109.81715 * 296.65374 * 4 2 1 34 34 H 1.08008 * 119.89503 * 359.53647 * 7 6 5 35 35 H 1.08004 * 119.98145 * 180.02562 * 8 7 6 36 36 H 1.08005 * 119.94022 * 180.10210 * 9 8 7 37 37 H 1.07999 * 119.88085 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.46560 * 315.46560 * 13 12 11 39 39 H 1.08994 * 109.47633 * 195.46809 * 13 12 11 40 40 H 1.08007 * 119.96227 * 0.02562 * 15 14 13 41 41 H 1.07994 * 120.03581 * 179.74170 * 16 15 14 42 42 H 0.96993 * 120.00088 * 179.97438 * 22 21 19 43 43 H 1.08007 * 120.03530 * 180.02562 * 27 17 16 44 44 H 1.07990 * 119.96517 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0258 0.0000 4 6 2.0450 -0.7323 -1.2459 5 8 3.4741 -0.6501 -1.2453 6 6 4.1006 -0.9075 -0.0643 7 6 5.4680 -1.1445 -0.0721 8 6 6.1360 -1.3996 1.1102 9 6 5.4428 -1.4189 2.3063 10 6 4.0822 -1.1851 2.3223 11 6 3.4012 -0.9290 1.1363 12 7 2.0226 -0.7005 1.1918 13 6 1.2891 -1.9552 1.4058 14 6 1.4314 -2.3811 2.8443 15 6 2.4840 -3.1949 3.2222 16 6 2.6144 -3.5909 4.5387 17 6 1.6934 -3.1621 5.4857 18 8 1.8218 -3.5455 6.7817 19 6 2.7975 -4.4321 7.0639 20 1 3.3827 -4.8635 6.2653 21 6 3.0496 -4.7902 8.3795 22 7 2.3370 -4.2644 9.3524 23 14 4.4009 -6.0192 8.7705 24 1 5.7027 -5.4942 8.2858 25 1 4.4677 -6.2309 10.2387 26 1 4.1062 -7.3097 8.0976 27 6 0.6406 -2.3408 5.1041 28 6 0.5127 -1.9525 3.7849 29 1 -0.3634 0.3447 0.9681 30 1 -0.3633 0.6660 -0.7827 31 1 -0.3634 -1.0108 -0.1855 32 1 1.6486 -0.2571 -2.1432 33 1 1.7357 -1.7770 -1.2146 34 1 6.0116 -1.1297 -1.0052 35 1 7.2003 -1.5832 1.1000 36 1 5.9667 -1.6168 3.2298 37 1 3.5446 -1.2006 3.2589 38 1 1.6964 -2.7295 0.7556 39 1 0.2349 -1.8038 1.1743 40 1 3.2028 -3.5237 2.4862 41 1 3.4341 -4.2297 4.8324 42 1 2.5131 -4.5151 10.2727 43 1 -0.0770 -2.0054 5.8383 44 1 -0.3056 -1.3135 3.4877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744421975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:44 Heat of formation + Delta-G solvation = 8.080416 kcal Electronic energy + Delta-G solvation = -27547.715810 eV Core-core repulsion = 23817.543300 eV Total energy + Delta-G solvation = -3730.172510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.36467 -39.06181 -37.58041 -37.37059 -36.00764 -32.52830 -32.16888 -30.64983 -30.34205 -29.94702 -27.97027 -26.79135 -25.63030 -24.50365 -22.88351 -22.23077 -21.89468 -20.86919 -19.38304 -18.15970 -17.94817 -17.14151 -16.74829 -16.48778 -15.27217 -15.15259 -15.10512 -14.69737 -14.56452 -14.35718 -13.93199 -13.80420 -13.67345 -13.48757 -13.41702 -12.75640 -12.67927 -12.56754 -12.49649 -12.33369 -11.74884 -11.60876 -11.54768 -11.48630 -11.15685 -11.06631 -10.99444 -10.73717 -10.63342 -10.47521 -10.42751 -9.39172 -9.21295 -8.83621 -8.35225 -8.09298 -7.86325 -7.18935 -6.46798 -4.05449 1.38717 1.50478 2.22962 2.23873 3.12413 3.12632 3.16054 3.18425 3.65055 3.86059 3.95405 4.30010 4.55299 4.69057 4.75533 4.80644 5.07415 5.09280 5.12511 5.14865 5.24204 5.25517 5.36327 5.39936 5.42668 5.48988 5.66198 5.67226 5.72493 5.75154 5.84262 5.88123 6.05466 6.20888 6.33237 6.33833 6.44098 6.63763 6.68000 6.76285 6.87418 6.95340 7.03871 7.10419 7.24536 7.36145 7.42800 7.51900 7.80309 7.98104 8.98806 9.68691 10.71057 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.003483 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.481681 B = 8037.445103 C = 9346.835033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 H 0.097 0.903 4 C 0.026 3.974 5 O -0.313 6.313 6 C 0.079 3.921 7 C -0.142 4.142 8 C -0.101 4.101 9 C -0.141 4.141 10 C -0.069 4.069 11 C 0.034 3.966 12 N -0.478 5.478 13 C 0.104 3.896 14 C -0.185 4.185 15 C -0.054 4.054 16 C -0.236 4.236 17 C 0.158 3.842 18 O -0.176 6.176 19 C -0.392 4.392 20 H 0.091 0.909 21 C 0.040 3.960 22 N -0.862 5.862 23 Si 0.940 3.060 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.196 4.196 28 C -0.051 4.051 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.142 0.858 38 H 0.037 0.963 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.271 0.729 43 H 0.116 0.884 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 6.404 -19.229 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 H 0.115 0.885 4 C -0.052 4.052 5 O -0.227 6.227 6 C 0.032 3.968 7 C -0.161 4.161 8 C -0.120 4.120 9 C -0.159 4.159 10 C -0.088 4.088 11 C -0.063 4.063 12 N -0.195 5.195 13 C -0.019 4.019 14 C -0.186 4.186 15 C -0.073 4.073 16 C -0.256 4.256 17 C 0.104 3.896 18 O -0.079 6.079 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.164 4.164 22 N -0.497 5.497 23 Si 0.764 3.236 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.216 4.216 28 C -0.070 4.070 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.159 0.841 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.401 6.792 -18.535 19.744 hybrid contribution 0.768 -1.087 -0.333 1.372 sum 1.169 5.705 -18.868 19.746 Atomic orbital electron populations 1.21915 0.92720 1.02425 1.03564 1.22482 0.97024 0.99090 0.87807 0.88469 1.23626 0.79498 1.01242 1.00786 1.86263 1.20497 1.85827 1.30151 1.19041 0.92878 1.00677 0.84236 1.20345 0.91397 1.05279 0.99111 1.20900 0.99655 0.99651 0.91791 1.21057 0.94163 1.02460 0.98259 1.21281 0.93686 0.96237 0.97596 1.18716 0.89583 1.05713 0.92291 1.59438 1.01068 1.23028 1.35974 1.21137 0.98310 0.87830 0.94641 1.18978 0.99812 1.05835 0.93989 1.20617 0.95644 0.95764 0.95230 1.21096 1.03072 1.08177 0.93233 1.19408 0.92809 0.91933 0.85449 1.83991 1.50010 1.54171 1.19755 1.21273 1.13054 1.19092 0.93385 0.89128 1.25281 0.98416 0.98371 0.94358 1.70026 1.38241 1.41362 1.00033 0.85800 0.79994 0.79822 0.77959 1.19454 1.20262 1.19500 1.20184 1.00201 1.05056 0.96142 1.20406 0.97530 0.97232 0.91825 0.90478 0.91473 0.91807 0.87293 0.91746 0.85733 0.85702 0.85587 0.84060 0.94419 0.89246 0.87936 0.85618 0.91939 0.86584 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.13 37.16 0.30 -0.88 16 2 C 0.04 0.47 3.05 -67.58 -0.21 0.26 16 3 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.03 0.26 6.34 37.37 0.24 0.49 16 5 O -0.31 -4.09 10.40 -20.21 -0.21 -4.30 16 6 C 0.08 1.11 6.47 -39.11 -0.25 0.85 16 7 C -0.14 -1.82 9.94 -39.41 -0.39 -2.21 16 8 C -0.10 -1.24 10.04 -39.60 -0.40 -1.63 16 9 C -0.14 -1.93 10.03 -39.64 -0.40 -2.33 16 10 C -0.07 -1.06 6.90 -39.31 -0.27 -1.33 16 11 C 0.03 0.49 5.00 -83.59 -0.42 0.07 16 12 N -0.48 -6.43 4.48 -164.65 -0.74 -7.16 16 13 C 0.10 1.40 4.30 -4.98 -0.02 1.38 16 14 C -0.18 -3.05 4.39 -104.57 -0.46 -3.51 16 15 C -0.05 -0.97 6.50 -39.61 -0.26 -1.22 16 16 C -0.24 -5.00 9.14 -39.40 -0.36 -5.36 16 17 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 18 O -0.18 -4.96 9.76 0.03 0.00 -4.96 16 19 C -0.39 -10.80 9.45 30.89 0.29 -10.51 16 20 H 0.09 2.31 5.28 -52.49 -0.28 2.03 16 21 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 22 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 23 Si 0.94 20.33 29.55 -169.99 -5.02 15.30 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 27 C -0.20 -4.05 9.99 -39.40 -0.39 -4.44 16 28 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.47 6.55 -51.93 -0.34 0.13 16 32 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.64 7.19 -51.93 -0.37 0.27 16 34 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 35 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.14 2.47 5.89 -52.49 -0.31 2.16 16 38 H 0.04 0.52 7.37 -51.93 -0.38 0.13 16 39 H 0.09 1.02 5.15 -51.93 -0.27 0.75 16 40 H 0.10 1.73 7.37 -52.48 -0.39 1.34 16 41 H 0.13 2.69 5.70 -52.49 -0.30 2.39 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 44 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 352.35 15.07 5.31 5.31 Total: -1.00 -30.71 352.35 -9.21 -39.92 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.58 Total: 7.35 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -3.74 Total: -27.15 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.02 Total: -31.48 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.21 Total: -9.26 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.71 -9.21 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744421975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.005 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds