Wall clock time and date at job start Tue Mar 31 2020 14:09:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.34806 * 119.99511 * 2 1
4 4 C 1.46436 * 119.99973 * 180.02562 * 3 2 1
5 5 O 1.21701 * 119.99743 * 359.97438 * 4 3 2
6 6 N 1.34769 * 119.99973 * 179.97438 * 4 3 2
7 7 C 1.46508 * 119.99786 * 179.97438 * 6 4 3
8 8 C 1.50702 * 109.46502 * 90.00332 * 7 6 4
9 9 H 1.07998 * 120.00396 * 359.97438 * 8 7 6
10 10 C 1.37881 * 119.99598 * 179.97438 * 8 7 6
11 11 N 1.31514 * 119.99831 * 179.97438 * 10 8 7
12 12 Si 1.86797 * 120.00215 * 359.97438 * 10 8 7
13 13 H 1.48505 * 109.47165 * 89.99926 * 12 10 8
14 14 H 1.48499 * 109.46946 * 209.99885 * 12 10 8
15 15 H 1.48501 * 109.47184 * 329.99962 * 12 10 8
16 16 C 1.46500 * 120.00303 * 359.97438 * 6 4 3
17 17 C 1.50697 * 109.47274 * 89.99811 * 16 6 4
18 18 C 1.34513 * 125.79018 * 89.99702 * 17 16 6
19 19 C 1.41387 * 106.84331 * 180.02562 * 18 17 16
20 20 C 1.34511 * 106.83898 * 0.02562 * 19 18 17
21 21 O 1.34300 * 125.79354 * 269.69439 * 17 16 6
22 22 C 1.47208 * 120.00477 * 180.02562 * 2 1 3
23 23 C 1.39835 * 120.16536 * 294.99868 * 22 2 1
24 24 C 1.37895 * 119.82663 * 179.97438 * 23 22 2
25 25 C 1.38404 * 120.16863 * 359.97438 * 24 23 22
26 26 C 1.38399 * 120.34408 * 0.02562 * 25 24 23
27 27 C 1.37896 * 120.17498 * 359.97438 * 26 25 24
28 28 H 1.09002 * 109.47236 * 269.99748 * 1 2 3
29 29 H 1.08995 * 109.47658 * 30.00165 * 1 2 3
30 30 H 1.09005 * 109.46874 * 150.00380 * 1 2 3
31 31 H 1.07998 * 120.00274 * 0.02562 * 3 2 1
32 32 H 1.08996 * 109.46936 * 209.99730 * 7 6 4
33 33 H 1.08994 * 109.47107 * 330.00481 * 7 6 4
34 34 H 0.97001 * 120.00427 * 180.02562 * 11 10 8
35 35 H 1.08998 * 109.47185 * 209.99770 * 16 6 4
36 36 H 1.08998 * 109.46965 * 330.00247 * 16 6 4
37 37 H 1.08006 * 126.57998 * 0.04091 * 18 17 16
38 38 H 1.08002 * 126.58001 * 179.97438 * 19 18 17
39 39 H 1.08003 * 125.79143 * 180.02562 * 20 19 18
40 40 H 1.07999 * 120.09098 * 359.70488 * 23 22 2
41 41 H 1.07999 * 119.91563 * 179.97438 * 24 23 22
42 42 H 1.07998 * 119.82759 * 179.97438 * 25 24 23
43 43 H 1.08001 * 119.91532 * 180.02562 * 26 25 24
44 44 H 1.07996 * 120.08823 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1809 1.1675 0.0000
4 6 3.6453 1.1676 -0.0006
5 8 4.2538 0.1137 -0.0006
6 7 4.3190 2.3348 -0.0011
7 6 5.7841 2.3349 -0.0011
8 6 6.2863 2.3344 -1.4220
9 1 5.5844 2.3336 -2.2428
10 6 7.6419 2.3349 -1.6740
11 7 8.0802 2.3339 -2.9139
12 14 8.8558 2.3369 -0.2543
13 1 9.1783 0.9374 0.1234
14 1 10.0987 3.0372 -0.6668
15 1 8.2556 3.0378 0.9093
16 6 3.5865 3.6035 -0.0017
17 6 3.3352 4.0392 1.4189
18 6 4.1490 4.8122 2.1603
19 6 3.5288 4.9687 3.4212
20 6 2.3734 4.2816 3.3751
21 8 2.2582 3.7263 2.1576
22 6 2.2431 -1.2748 -0.0006
23 6 2.1521 -2.1393 1.0948
24 6 2.8442 -3.3319 1.0866
25 6 3.6270 -3.6744 -0.0022
26 6 3.7222 -2.8241 -1.0900
27 6 3.0361 -1.6279 -1.0968
28 1 -0.3634 0.0000 1.0277
29 1 -0.3634 0.8899 -0.5138
30 1 -0.3633 -0.8901 -0.5138
31 1 1.6409 2.1028 0.0004
32 1 6.1473 3.2251 0.5123
33 1 6.1474 1.4452 0.5130
34 1 9.0338 2.3339 -3.0913
35 1 4.1755 4.3630 -0.5158
36 1 2.6341 3.4729 -0.5154
37 1 5.0947 5.2327 1.8515
38 1 3.9101 5.5313 4.2606
39 1 1.6568 4.1961 4.1787
40 1 1.5447 -1.8717 1.9468
41 1 2.7752 -4.0005 1.9320
42 1 4.1671 -4.6096 -0.0026
43 1 4.3348 -3.0984 -1.9361
44 1 3.1117 -0.9653 -1.9462
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000749378407.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:09:00
Heat of formation + Delta-G solvation = 37.878348 kcal
Electronic energy + Delta-G solvation = -27556.353255 eV
Core-core repulsion = 23827.472880 eV
Total energy + Delta-G solvation = -3728.880375 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.38001 -39.61687 -38.29626 -35.44937 -34.57693 -32.83068 -32.61854 -30.54061
-30.30681 -29.71983 -28.74155 -27.13227 -25.45660 -23.29243 -22.24937 -21.99839
-21.53130 -20.58761 -19.59737 -18.20435 -17.37505 -16.98295 -16.64412 -16.18918
-15.78344 -15.35997 -14.82155 -14.55534 -14.41477 -14.04446 -13.72857 -13.57760
-13.28408 -13.05198 -12.96380 -12.73138 -12.67615 -12.54794 -12.43924 -12.17488
-12.05761 -11.96118 -11.69416 -11.45595 -10.94448 -10.76814 -10.70042 -10.53996
-10.19667 -9.76985 -9.57942 -9.33647 -8.90960 -8.59841 -8.47664 -8.37365
-7.84733 -7.77755 -6.09804 -4.08397 1.30145 1.84132 1.86358 2.00001
2.75408 3.13442 3.28783 3.34821 3.37725 3.88220 3.99859 4.20125
4.39103 4.78171 4.86073 4.97517 5.11324 5.18465 5.23303 5.25831
5.32850 5.37617 5.44240 5.49750 5.53867 5.59795 5.78565 5.83093
5.87993 5.93821 5.99161 6.10024 6.20061 6.23324 6.40386 6.44995
6.51298 6.64366 6.74932 6.84462 6.90678 6.96195 7.00892 7.23647
7.35561 7.40614 7.59856 8.20328 8.45650 8.92346 9.00139 9.50906
11.03349
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.007903 B = 0.005958 C = 0.003873
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3542.065347 B = 4698.165458 C = 7227.652319
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.017 4.017
3 C -0.199 4.199
4 C 0.537 3.463
5 O -0.517 6.517
6 N -0.586 5.586
7 C 0.218 3.782
8 C -0.527 4.527
9 H 0.076 0.924
10 C 0.075 3.925
11 N -0.896 5.896
12 Si 0.872 3.128
13 H -0.274 1.274
14 H -0.285 1.285
15 H -0.266 1.266
16 C 0.190 3.810
17 C -0.024 4.024
18 C -0.199 4.199
19 C -0.214 4.214
20 C -0.049 4.049
21 O -0.174 6.174
22 C -0.043 4.043
23 C -0.110 4.110
24 C -0.133 4.133
25 C -0.119 4.119
26 C -0.122 4.122
27 C -0.042 4.042
28 H 0.075 0.925
29 H 0.071 0.929
30 H 0.070 0.930
31 H 0.128 0.872
32 H 0.029 0.971
33 H 0.037 0.963
34 H 0.264 0.736
35 H 0.117 0.883
36 H 0.088 0.912
37 H 0.148 0.852
38 H 0.144 0.856
39 H 0.198 0.802
40 H 0.113 0.887
41 H 0.114 0.886
42 H 0.113 0.887
43 H 0.117 0.883
44 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.915 -1.101 9.590 18.614
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.019 4.019
3 C -0.220 4.220
4 C 0.326 3.674
5 O -0.394 6.394
6 N -0.316 5.316
7 C 0.098 3.902
8 C -0.565 4.565
9 H 0.094 0.906
10 C -0.128 4.128
11 N -0.535 5.535
12 Si 0.699 3.301
13 H -0.199 1.199
14 H -0.211 1.211
15 H -0.191 1.191
16 C 0.066 3.934
17 C -0.075 4.075
18 C -0.219 4.219
19 C -0.234 4.234
20 C -0.117 4.117
21 O -0.069 6.069
22 C -0.043 4.043
23 C -0.128 4.128
24 C -0.151 4.151
25 C -0.137 4.137
26 C -0.140 4.140
27 C -0.060 4.060
28 H 0.094 0.906
29 H 0.090 0.910
30 H 0.089 0.911
31 H 0.146 0.854
32 H 0.047 0.953
33 H 0.055 0.945
34 H 0.074 0.926
35 H 0.135 0.865
36 H 0.106 0.894
37 H 0.166 0.834
38 H 0.162 0.838
39 H 0.214 0.786
40 H 0.131 0.869
41 H 0.132 0.868
42 H 0.131 0.869
43 H 0.135 0.865
44 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -15.614 -1.838 9.352 18.293
hybrid contribution 1.147 0.478 0.995 1.592
sum -14.467 -1.360 10.348 17.839
Atomic orbital electron populations
1.20875 0.90626 1.03082 1.02601 1.21041 0.95131 0.92100 0.93648
1.23076 0.94432 0.97966 1.06514 1.18276 0.87653 0.83963 0.77488
1.90868 1.70040 1.29663 1.48859 1.47899 1.08373 1.03663 1.71705
1.19661 0.74739 0.97465 0.98345 1.21303 0.92718 1.51373 0.91128
0.90618 1.24817 0.98083 0.94442 0.95431 1.69889 1.14521 1.50510
1.18570 0.86908 0.81143 0.78924 0.83093 1.19949 1.21062 1.19055
1.19928 0.98428 0.88639 0.86417 1.23335 0.87166 1.00646 0.96371
1.21688 1.01936 1.03999 0.94272 1.21813 0.96892 1.05409 0.99243
1.23936 1.00662 1.00113 0.87011 1.84013 1.40349 1.60043 1.22529
1.18652 0.97628 0.92893 0.95104 1.20971 1.00436 0.94156 0.97214
1.20828 0.98828 0.97115 0.98321 1.21075 0.99050 0.99512 0.94102
1.20944 0.99577 0.94784 0.98721 1.21007 0.92969 0.94773 0.97231
0.90636 0.91002 0.91119 0.85418 0.95328 0.94502 0.92574 0.86518
0.89363 0.83401 0.83810 0.78560 0.86937 0.86830 0.86878 0.86450
0.86659
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.17 10.02 36.00 0.36 -0.81 16
2 C -0.02 -0.25 5.49 -102.20 -0.56 -0.81 16
3 C -0.20 -3.21 8.87 -37.50 -0.33 -3.54 16
4 C 0.54 11.14 7.48 -12.96 -0.10 11.05 16
5 O -0.52 -12.43 11.77 5.19 0.06 -12.37 16
6 N -0.59 -12.11 2.44 -178.08 -0.43 -12.55 16
7 C 0.22 5.32 4.23 -5.19 -0.02 5.30 16
8 C -0.53 -14.84 9.94 -34.44 -0.34 -15.18 16
9 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16
10 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16
11 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16
12 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16
13 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16
14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
15 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16
16 C 0.19 3.08 5.65 -5.20 -0.03 3.05 16
17 C -0.02 -0.36 6.90 -35.63 -0.25 -0.61 16
18 C -0.20 -3.00 10.81 -39.70 -0.43 -3.43 16
19 C -0.21 -2.76 10.91 -39.70 -0.43 -3.19 16
20 C -0.05 -0.59 12.09 29.41 0.36 -0.24 16
21 O -0.17 -2.50 10.65 5.71 0.06 -2.44 16
22 C -0.04 -0.70 3.83 -105.06 -0.40 -1.11 16
23 C -0.11 -1.66 9.78 -39.11 -0.38 -2.04 16
24 C -0.13 -1.92 10.03 -39.65 -0.40 -2.32 16
25 C -0.12 -1.80 10.04 -39.46 -0.40 -2.20 16
26 C -0.12 -2.05 10.03 -39.65 -0.40 -2.45 16
27 C -0.04 -0.75 6.96 -39.11 -0.27 -1.02 16
28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16
30 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16
31 H 0.13 1.73 6.21 -52.49 -0.33 1.41 16
32 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16
33 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16
34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16
35 H 0.12 1.84 8.07 -51.93 -0.42 1.42 16
36 H 0.09 1.20 6.09 -51.93 -0.32 0.89 16
37 H 0.15 2.17 8.06 -52.48 -0.42 1.75 16
38 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16
39 H 0.20 1.53 8.06 -52.48 -0.42 1.11 16
40 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16
41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16
42 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16
43 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16
44 H 0.12 2.15 8.05 -52.49 -0.42 1.73 16
LS Contribution 375.07 15.07 5.65 5.65
Total: -1.00 -34.52 375.07 -8.70 -43.22
By element:
Atomic # 1 Polarization: 11.58 SS G_CDS: -6.02 Total: 5.56 kcal
Atomic # 6 Polarization: -13.37 SS G_CDS: -4.12 Total: -17.49 kcal
Atomic # 7 Polarization: -39.46 SS G_CDS: 0.34 Total: -39.12 kcal
Atomic # 8 Polarization: -14.94 SS G_CDS: 0.12 Total: -14.82 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -34.52 -8.70 -43.22 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000749378407.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.101 kcal
(2) G-P(sol) polarization free energy of solvation -34.523 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.579 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.878 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds