Wall clock time and date at job start Tue Mar 31 2020 14:08:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.34806 * 119.99511 * 2 1
4 4 C 1.46436 * 119.99973 * 180.02562 * 3 2 1
5 5 O 1.21701 * 119.99743 * 359.97438 * 4 3 2
6 6 N 1.34769 * 119.99973 * 179.97438 * 4 3 2
7 7 C 1.46508 * 119.99786 * 179.97438 * 6 4 3
8 8 C 1.50702 * 109.46502 * 90.00332 * 7 6 4
9 9 H 1.07998 * 120.00396 * 359.97438 * 8 7 6
10 10 C 1.37881 * 119.99598 * 179.97438 * 8 7 6
11 11 N 1.31514 * 119.99831 * 179.97438 * 10 8 7
12 12 Si 1.86797 * 120.00215 * 359.97438 * 10 8 7
13 13 H 1.48505 * 109.47165 * 89.99926 * 12 10 8
14 14 H 1.48499 * 109.46946 * 209.99885 * 12 10 8
15 15 H 1.48501 * 109.47184 * 329.99962 * 12 10 8
16 16 C 1.46500 * 120.00303 * 359.97438 * 6 4 3
17 17 C 1.50697 * 109.47274 * 89.99811 * 16 6 4
18 18 C 1.34513 * 125.79018 * 89.99702 * 17 16 6
19 19 C 1.41387 * 106.84331 * 180.02562 * 18 17 16
20 20 C 1.34511 * 106.83898 * 0.02562 * 19 18 17
21 21 O 1.34300 * 125.79354 * 269.69439 * 17 16 6
22 22 C 1.47208 * 120.00477 * 180.02562 * 2 1 3
23 23 C 1.39835 * 120.16536 * 294.99868 * 22 2 1
24 24 C 1.37895 * 119.82663 * 179.97438 * 23 22 2
25 25 C 1.38404 * 120.16863 * 359.97438 * 24 23 22
26 26 C 1.38399 * 120.34408 * 0.02562 * 25 24 23
27 27 C 1.37896 * 120.17498 * 359.97438 * 26 25 24
28 28 H 1.09002 * 109.47236 * 269.99748 * 1 2 3
29 29 H 1.08995 * 109.47658 * 30.00165 * 1 2 3
30 30 H 1.09005 * 109.46874 * 150.00380 * 1 2 3
31 31 H 1.07998 * 120.00274 * 0.02562 * 3 2 1
32 32 H 1.08996 * 109.46936 * 209.99730 * 7 6 4
33 33 H 1.08994 * 109.47107 * 330.00481 * 7 6 4
34 34 H 0.97001 * 120.00427 * 180.02562 * 11 10 8
35 35 H 1.08998 * 109.47185 * 209.99770 * 16 6 4
36 36 H 1.08998 * 109.46965 * 330.00247 * 16 6 4
37 37 H 1.08006 * 126.57998 * 0.04091 * 18 17 16
38 38 H 1.08002 * 126.58001 * 179.97438 * 19 18 17
39 39 H 1.08003 * 125.79143 * 180.02562 * 20 19 18
40 40 H 1.07999 * 120.09098 * 359.70488 * 23 22 2
41 41 H 1.07999 * 119.91563 * 179.97438 * 24 23 22
42 42 H 1.07998 * 119.82759 * 179.97438 * 25 24 23
43 43 H 1.08001 * 119.91532 * 180.02562 * 26 25 24
44 44 H 1.07996 * 120.08823 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1809 1.1675 0.0000
4 6 3.6453 1.1676 -0.0006
5 8 4.2538 0.1137 -0.0006
6 7 4.3190 2.3348 -0.0011
7 6 5.7841 2.3349 -0.0011
8 6 6.2863 2.3344 -1.4220
9 1 5.5844 2.3336 -2.2428
10 6 7.6419 2.3349 -1.6740
11 7 8.0802 2.3339 -2.9139
12 14 8.8558 2.3369 -0.2543
13 1 9.1783 0.9374 0.1234
14 1 10.0987 3.0372 -0.6668
15 1 8.2556 3.0378 0.9093
16 6 3.5865 3.6035 -0.0017
17 6 3.3352 4.0392 1.4189
18 6 4.1490 4.8122 2.1603
19 6 3.5288 4.9687 3.4212
20 6 2.3734 4.2816 3.3751
21 8 2.2582 3.7263 2.1576
22 6 2.2431 -1.2748 -0.0006
23 6 2.1521 -2.1393 1.0948
24 6 2.8442 -3.3319 1.0866
25 6 3.6270 -3.6744 -0.0022
26 6 3.7222 -2.8241 -1.0900
27 6 3.0361 -1.6279 -1.0968
28 1 -0.3634 0.0000 1.0277
29 1 -0.3634 0.8899 -0.5138
30 1 -0.3633 -0.8901 -0.5138
31 1 1.6409 2.1028 0.0004
32 1 6.1473 3.2251 0.5123
33 1 6.1474 1.4452 0.5130
34 1 9.0338 2.3339 -3.0913
35 1 4.1755 4.3630 -0.5158
36 1 2.6341 3.4729 -0.5154
37 1 5.0947 5.2327 1.8515
38 1 3.9101 5.5313 4.2606
39 1 1.6568 4.1961 4.1787
40 1 1.5447 -1.8717 1.9468
41 1 2.7752 -4.0005 1.9320
42 1 4.1671 -4.6096 -0.0026
43 1 4.3348 -3.0984 -1.9361
44 1 3.1117 -0.9653 -1.9462
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000749378407.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:08:59
Heat of formation + Delta-G solvation = 18.454513 kcal
Electronic energy + Delta-G solvation = -27557.195536 eV
Core-core repulsion = 23827.472880 eV
Total energy + Delta-G solvation = -3729.722656 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-43.42544 -41.04255 -39.63803 -36.97256 -35.83671 -34.80770 -33.83444 -31.85160
-31.69253 -30.96896 -30.15315 -28.48990 -26.76615 -24.87291 -23.72405 -23.26777
-22.59368 -21.75420 -20.97420 -19.48947 -19.18055 -18.50722 -17.97530 -17.55076
-17.08341 -16.64427 -16.37755 -15.93960 -15.75988 -15.52542 -15.05160 -14.81341
-14.77093 -14.39053 -14.23362 -14.03679 -13.88029 -13.72928 -13.59757 -13.51035
-13.46243 -13.21731 -13.09421 -12.94339 -12.60217 -12.49472 -12.10828 -11.96765
-11.85731 -11.76916 -10.85474 -10.82472 -10.77688 -10.18311 -9.76245 -9.51956
-9.36513 -9.12722 -8.35444 -6.39332 0.05744 0.61752 0.75590 0.79745
1.28497 1.32138 1.40332 1.70886 2.08697 2.27752 2.38550 2.55597
2.96532 2.98853 3.66260 3.71235 3.84354 4.04245 4.10562 4.16030
4.17957 4.29030 4.32376 4.40222 4.54177 4.60636 4.64209 4.72823
4.75162 4.83953 4.86963 4.95181 5.01917 5.06098 5.10202 5.20687
5.22215 5.32061 5.43045 5.44587 5.56987 5.64459 5.65312 5.68630
5.75863 6.20093 6.22448 6.25870 6.61556 6.65593 7.21217 7.44231
8.81213
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.007903 B = 0.005958 C = 0.003873
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3542.065347 B = 4698.165458 C = 7227.652319
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C 0.004 3.996
3 C -0.220 4.220
4 C 0.525 3.475
5 O -0.563 6.563
6 N -0.594 5.594
7 C 0.233 3.767
8 C -0.529 4.529
9 H 0.034 0.966
10 C 0.017 3.983
11 N -0.942 5.942
12 Si 0.939 3.061
13 H -0.279 1.279
14 H -0.272 1.272
15 H -0.243 1.243
16 C 0.190 3.810
17 C -0.043 4.043
18 C -0.212 4.212
19 C -0.230 4.230
20 C -0.034 4.034
21 O -0.180 6.180
22 C -0.059 4.059
23 C -0.114 4.114
24 C -0.132 4.132
25 C -0.126 4.126
26 C -0.144 4.144
27 C -0.069 4.069
28 H 0.101 0.899
29 H 0.090 0.910
30 H 0.079 0.921
31 H 0.155 0.845
32 H 0.043 0.957
33 H 0.013 0.987
34 H 0.268 0.732
35 H 0.112 0.888
36 H 0.112 0.888
37 H 0.143 0.857
38 H 0.167 0.833
39 H 0.242 0.758
40 H 0.140 0.860
41 H 0.148 0.852
42 H 0.138 0.862
43 H 0.116 0.884
44 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.114 -0.929 13.119 22.385
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.002 3.998
3 C -0.240 4.240
4 C 0.317 3.683
5 O -0.444 6.444
6 N -0.325 5.325
7 C 0.111 3.889
8 C -0.567 4.567
9 H 0.052 0.948
10 C -0.181 4.181
11 N -0.582 5.582
12 Si 0.762 3.238
13 H -0.205 1.205
14 H -0.197 1.197
15 H -0.166 1.166
16 C 0.067 3.933
17 C -0.094 4.094
18 C -0.233 4.233
19 C -0.248 4.248
20 C -0.101 4.101
21 O -0.076 6.076
22 C -0.059 4.059
23 C -0.132 4.132
24 C -0.150 4.150
25 C -0.144 4.144
26 C -0.163 4.163
27 C -0.087 4.087
28 H 0.119 0.881
29 H 0.109 0.891
30 H 0.098 0.902
31 H 0.172 0.828
32 H 0.061 0.939
33 H 0.031 0.969
34 H 0.077 0.923
35 H 0.130 0.870
36 H 0.130 0.870
37 H 0.161 0.839
38 H 0.185 0.815
39 H 0.258 0.742
40 H 0.158 0.842
41 H 0.165 0.835
42 H 0.156 0.844
43 H 0.134 0.866
44 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -17.854 -1.625 12.884 22.077
hybrid contribution 1.742 0.355 -0.121 1.782
sum -16.112 -1.269 12.763 20.594
Atomic orbital electron populations
1.20996 0.86789 1.04495 1.04501 1.21540 0.97520 0.90658 0.90126
1.22951 0.91471 0.99807 1.09790 1.19109 0.89675 0.83181 0.76294
1.90838 1.71377 1.31126 1.51041 1.47927 1.07035 1.05654 1.71846
1.19213 0.77644 0.96650 0.95381 1.21489 0.92336 1.50772 0.92118
0.94803 1.25714 1.00171 0.94019 0.98192 1.70030 1.15197 1.51992
1.20954 0.85846 0.78843 0.78823 0.80258 1.20532 1.19719 1.16624
1.20013 0.98895 0.86498 0.87925 1.22948 0.88272 1.02005 0.96162
1.21921 1.01875 1.03894 0.95566 1.22126 0.97310 1.06356 0.99046
1.24838 1.00873 0.97858 0.86573 1.83998 1.39826 1.60334 1.23404
1.18956 0.97716 0.94140 0.95115 1.21344 1.00567 0.94018 0.97304
1.21279 0.97522 0.97337 0.98817 1.21399 0.99268 1.00087 0.93623
1.21131 1.00020 0.95261 0.99849 1.20946 0.94891 0.95223 0.97641
0.88109 0.89106 0.90244 0.82753 0.93938 0.96896 0.92287 0.86987
0.86965 0.83887 0.81525 0.74182 0.84226 0.83456 0.84420 0.86627
0.89350
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.89 10.02 71.24 0.71 -1.17 16
2 C 0.00 0.10 5.49 -18.29 -0.10 0.00 16
3 C -0.22 -6.94 8.87 23.62 0.21 -6.73 16
4 C 0.53 22.45 7.48 86.38 0.65 23.10 16
5 O -0.56 -28.39 11.77 -4.35 -0.05 -28.44 16
6 N -0.59 -25.29 2.44 -835.53 -2.04 -27.32 16
7 C 0.23 11.73 4.23 85.63 0.36 12.09 16
8 C -0.53 -31.30 9.94 25.60 0.25 -31.04 16
9 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16
10 C 0.02 1.04 5.47 84.66 0.46 1.50 16
11 N -0.94 -59.77 13.96 21.45 0.30 -59.47 16
12 Si 0.94 45.53 27.47 68.60 1.88 47.41 16
13 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16
14 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16
15 H -0.24 -10.77 6.54 99.48 0.65 -10.12 16
16 C 0.19 6.16 5.65 85.63 0.48 6.64 16
17 C -0.04 -1.27 6.90 24.83 0.17 -1.10 16
18 C -0.21 -6.13 10.81 22.19 0.24 -5.90 16
19 C -0.23 -5.25 10.91 22.19 0.24 -5.01 16
20 C -0.03 -0.69 12.09 66.97 0.81 0.12 16
21 O -0.18 -4.70 10.65 -2.47 -0.03 -4.72 16
22 C -0.06 -1.94 3.83 -20.15 -0.08 -2.02 16
23 C -0.11 -3.24 9.78 22.58 0.22 -3.02 16
24 C -0.13 -3.54 10.03 22.23 0.22 -3.32 16
25 C -0.13 -3.73 10.04 22.35 0.22 -3.50 16
26 C -0.14 -5.09 10.03 22.23 0.22 -4.87 16
27 C -0.07 -2.60 6.96 22.57 0.16 -2.44 16
28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16
29 H 0.09 1.25 8.08 -2.39 -0.02 1.23 16
30 H 0.08 1.25 8.11 -2.38 -0.02 1.23 16
31 H 0.16 3.90 6.21 -2.91 -0.02 3.88 16
32 H 0.04 2.01 7.13 -2.39 -0.02 1.99 16
33 H 0.01 0.71 6.85 -2.39 -0.02 0.70 16
34 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16
35 H 0.11 3.65 8.07 -2.39 -0.02 3.63 16
36 H 0.11 3.01 6.09 -2.39 -0.01 2.99 16
37 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16
38 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16
39 H 0.24 2.44 8.06 -2.91 -0.02 2.42 16
40 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16
41 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16
42 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16
43 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16
44 H 0.09 3.67 8.05 -2.91 -0.02 3.65 16
Total: -1.00 -80.32 375.07 6.47 -73.85
By element:
Atomic # 1 Polarization: 24.42 SS G_CDS: 0.94 Total: 25.36 kcal
Atomic # 6 Polarization: -32.12 SS G_CDS: 5.47 Total: -26.66 kcal
Atomic # 7 Polarization: -85.05 SS G_CDS: -1.74 Total: -86.79 kcal
Atomic # 8 Polarization: -33.09 SS G_CDS: -0.08 Total: -33.17 kcal
Atomic # 14 Polarization: 45.53 SS G_CDS: 1.88 Total: 47.41 kcal
Total: -80.32 6.47 -73.85 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000749378407.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.302 kcal
(2) G-P(sol) polarization free energy of solvation -80.322 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.980 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.847 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.455 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds