Wall clock time and date at job start Tue Mar 31 2020 16:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46903 * 2 1 4 4 O 1.42901 * 109.47371 * 240.00383 * 2 1 3 5 5 C 1.50697 * 109.46946 * 120.00211 * 2 1 3 6 6 C 1.38239 * 119.99875 * 85.20987 * 5 2 1 7 7 C 1.38236 * 119.99802 * 180.21039 * 6 5 2 8 8 C 1.38230 * 119.99983 * 359.53599 * 7 6 5 9 9 C 1.50705 * 120.00208 * 180.25091 * 8 7 6 10 10 N 1.46501 * 109.46604 * 90.00172 * 9 8 7 11 11 C 1.34783 * 119.99718 * 180.02562 * 10 9 8 12 12 O 1.21586 * 119.99640 * 0.02562 * 11 10 9 13 13 C 1.47642 * 120.00046 * 179.97438 * 11 10 9 14 14 C 1.40015 * 119.89619 * 359.72792 * 13 11 10 15 15 C 1.36318 * 120.10905 * 179.71771 * 14 13 11 16 16 C 1.40891 * 119.88677 * 0.57718 * 15 14 13 17 17 C 1.41111 * 120.10014 * 179.67569 * 16 15 14 18 18 H 1.07994 * 120.00046 * 204.65052 * 17 16 15 19 19 C 1.40226 * 119.99926 * 24.65177 * 17 16 15 20 20 N 1.30646 * 120.00023 * 17.86956 * 19 17 16 21 21 Si 1.86796 * 120.00000 * 197.86090 * 19 17 16 22 22 H 1.48502 * 109.46985 * 60.00320 * 21 19 17 23 23 H 1.48498 * 109.47372 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47355 * 300.00355 * 21 19 17 25 25 C 1.40879 * 119.79385 * 359.69728 * 16 15 14 26 26 C 1.36318 * 119.89500 * 0.02562 * 25 16 15 27 27 C 1.38233 * 120.00157 * 0.27532 * 8 7 6 28 28 C 1.38229 * 120.00107 * 264.99984 * 5 2 1 29 29 H 1.08991 * 109.47386 * 299.99853 * 1 2 3 30 30 H 1.09000 * 109.46673 * 59.99787 * 1 2 3 31 31 H 1.08999 * 109.46711 * 179.97438 * 1 2 3 32 32 H 0.96704 * 113.99541 * 300.00310 * 4 2 1 33 33 H 1.07995 * 120.00161 * 0.02562 * 6 5 2 34 34 H 1.07994 * 120.00036 * 179.80857 * 7 6 5 35 35 H 1.09000 * 109.47422 * 210.00144 * 9 8 7 36 36 H 1.08994 * 109.46929 * 330.00719 * 9 8 7 37 37 H 0.97001 * 120.00462 * 359.97438 * 10 9 8 38 38 H 1.08003 * 119.94347 * 359.97438 * 14 13 11 39 39 H 1.07998 * 120.05385 * 180.25103 * 15 14 13 40 40 H 0.97002 * 120.00167 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.05490 * 179.97438 * 25 16 15 42 42 H 1.08005 * 119.94848 * 180.02562 * 26 25 16 43 43 H 1.08002 * 120.00708 * 179.97438 * 27 8 7 44 44 H 1.08002 * 119.99720 * 359.97438 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2304 6 6 2.1684 -2.0861 1.2271 7 6 2.6251 -2.7382 2.3572 8 6 2.9547 -2.0138 3.4874 9 6 3.4578 -2.7242 4.7176 10 7 4.9178 -2.8293 4.6578 11 6 5.5915 -3.4321 5.6575 12 8 4.9875 -3.8889 6.6087 13 6 7.0629 -3.5385 5.5971 14 6 7.7557 -3.0176 4.4975 15 6 9.1146 -3.1084 4.4399 16 6 9.8210 -3.7385 5.4835 17 6 11.2271 -3.8411 5.4253 18 1 11.7342 -4.6261 5.9666 19 6 11.9661 -2.9237 4.6646 20 7 11.4255 -1.7913 4.3009 21 14 13.7235 -3.3208 4.1713 22 1 13.7401 -4.5604 3.3538 23 1 14.2809 -2.1963 3.3775 24 1 14.5467 -3.5210 5.3909 25 6 9.1190 -4.2662 6.5851 26 6 7.7605 -4.1656 6.6365 27 6 2.8223 -0.6379 3.4895 28 6 2.3611 0.0138 2.3609 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7210 -1.5952 -1.2330 33 1 1.9152 -2.6516 0.3426 34 1 2.7285 -3.8132 2.3556 35 1 3.1701 -2.1612 5.6055 36 1 3.0233 -3.7227 4.7638 37 1 5.3996 -2.4658 3.8985 38 1 7.2128 -2.5394 3.6956 39 1 9.6484 -2.7027 3.5933 40 1 11.9366 -1.1569 3.7744 41 1 9.6561 -4.7505 7.3873 42 1 7.2214 -4.5695 7.4808 43 1 3.0794 -0.0718 4.3726 44 1 2.2583 1.0890 2.3622 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759262451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:40 Heat of formation + Delta-G solvation = -59.043400 kcal Electronic energy + Delta-G solvation = -25524.850985 eV Core-core repulsion = 21791.767767 eV Total energy + Delta-G solvation = -3733.083217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.12645 -39.01471 -37.53987 -37.00390 -34.48076 -33.87327 -32.26338 -31.13883 -30.52630 -29.63367 -29.42243 -26.69601 -25.34554 -23.37610 -22.82302 -21.82324 -21.01861 -20.72622 -19.62337 -17.89602 -17.52924 -17.02060 -16.28057 -15.67876 -15.50275 -15.31693 -15.09539 -14.84749 -14.11963 -14.07812 -13.95143 -13.70429 -13.62600 -13.41032 -13.22195 -12.73784 -12.48057 -12.44160 -12.28379 -12.10782 -11.91327 -11.70451 -11.37732 -11.35589 -11.26726 -11.14848 -10.98842 -10.64581 -10.47666 -10.07338 -9.56182 -9.35321 -9.19526 -9.13672 -8.71181 -8.62462 -7.72365 -7.54777 -7.03860 -4.60675 0.99383 1.19292 2.23113 2.92209 2.94228 2.98269 3.03582 3.36936 3.73442 3.86375 4.00304 4.10189 4.26473 4.53137 4.57283 4.65851 4.69910 4.81565 4.84236 5.18152 5.20958 5.31548 5.50893 5.57036 5.58191 5.60509 5.67260 5.80544 5.87718 6.04668 6.09910 6.17303 6.29077 6.31645 6.45250 6.74204 6.76689 6.82330 6.90241 7.04905 7.13258 7.22142 7.43157 7.64967 7.78958 7.85593 8.06740 8.22864 8.39474 8.62640 8.75014 9.05870 9.88101 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.002426 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.967128 B =11540.239466 C =13073.930352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.143 3.857 3 H 0.107 0.893 4 O -0.557 6.557 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.096 4.096 8 C -0.099 4.099 9 C 0.163 3.837 10 N -0.738 5.738 11 C 0.572 3.428 12 O -0.576 6.576 13 C -0.285 4.285 14 C -0.062 4.062 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.442 4.442 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.771 5.771 21 Si 0.914 3.086 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.239 4.239 26 C -0.022 4.022 27 C -0.097 4.097 28 C -0.113 4.113 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.374 0.626 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.399 0.601 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.127 0.873 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.895 4.263 -9.373 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.084 3.916 3 H 0.125 0.875 4 O -0.363 6.363 5 C -0.116 4.116 6 C -0.133 4.133 7 C -0.115 4.115 8 C -0.100 4.100 9 C 0.040 3.960 10 N -0.392 5.392 11 C 0.367 3.633 12 O -0.458 6.458 13 C -0.289 4.289 14 C -0.081 4.081 15 C -0.198 4.198 16 C 0.125 3.875 17 C -0.470 4.470 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.394 5.394 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.259 4.259 26 C -0.041 4.041 27 C -0.115 4.115 28 C -0.131 4.131 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.222 0.778 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.145 0.855 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.012 4.757 -8.923 18.938 hybrid contribution 0.729 -0.311 -0.445 0.908 sum -15.284 4.447 -9.368 18.469 Atomic orbital electron populations 1.22485 0.95396 1.02902 1.02952 1.20817 0.92977 0.96052 0.81772 0.87506 1.86641 1.77297 1.29199 1.43163 1.20568 1.00210 0.94472 0.96350 1.20798 1.00663 0.93682 0.98193 1.21087 0.97887 1.00178 0.92334 1.20031 1.00195 0.93991 0.95754 1.20045 0.81856 0.99767 0.94352 1.45967 1.05815 1.62330 1.25046 1.18617 0.88136 0.75819 0.80740 1.90633 1.70725 1.50367 1.34111 1.18874 0.89983 1.18327 1.01714 1.20476 0.94879 0.97393 0.95378 1.20977 0.92302 1.06181 1.00291 1.17787 0.93252 0.87278 0.89168 1.19818 0.91844 1.11202 1.24117 0.89730 1.26105 1.01483 0.93686 0.93455 1.69736 1.38960 1.05180 1.25552 0.86258 0.80798 0.79429 0.79771 1.18461 1.20047 1.18655 1.20711 0.93428 1.11920 0.99795 1.20362 0.93807 0.94292 0.95647 1.21136 0.98071 0.93848 0.98473 1.20942 0.99621 0.99786 0.92757 0.91268 0.91443 0.92103 0.77787 0.86214 0.85596 0.91189 0.91205 0.76605 0.89389 0.86199 0.90154 0.88376 0.88098 0.85535 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 9.52 37.16 0.35 -0.73 16 2 C 0.14 1.11 3.83 -27.88 -0.11 1.00 16 3 H 0.11 0.80 8.05 -51.93 -0.42 0.38 16 4 O -0.56 -4.91 13.13 -35.23 -0.46 -5.37 16 5 C -0.12 -1.06 5.01 -104.63 -0.52 -1.58 16 6 C -0.12 -1.06 9.33 -39.58 -0.37 -1.43 16 7 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 8 C -0.10 -1.16 5.25 -104.62 -0.55 -1.71 16 9 C 0.16 2.30 5.80 -5.19 -0.03 2.27 16 10 N -0.74 -12.46 5.50 -62.49 -0.34 -12.80 16 11 C 0.57 12.20 7.76 -12.42 -0.10 12.10 16 12 O -0.58 -13.71 16.32 5.29 0.09 -13.63 16 13 C -0.28 -6.54 5.89 -104.73 -0.62 -7.15 16 14 C -0.06 -1.39 9.47 -39.61 -0.38 -1.76 16 15 C -0.18 -4.39 8.63 -39.27 -0.34 -4.73 16 16 C 0.13 3.28 5.58 -106.80 -0.60 2.69 16 17 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 18 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 19 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 20 N -0.77 -18.53 10.95 55.56 0.61 -17.92 16 21 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 16 22 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 23 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 24 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 25 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 26 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 27 C -0.10 -1.05 9.70 -39.58 -0.38 -1.43 16 28 C -0.11 -1.08 9.68 -39.58 -0.38 -1.46 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.37 2.06 7.39 45.56 0.34 2.40 16 33 H 0.12 0.80 6.61 -52.49 -0.35 0.46 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 36 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.40 6.28 6.47 -40.82 -0.26 6.02 16 38 H 0.09 1.70 6.37 -52.48 -0.33 1.36 16 39 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 40 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 41 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 42 H 0.10 2.31 7.63 -52.48 -0.40 1.91 16 43 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -29.82 373.11 -10.21 -40.03 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.10 Total: 13.93 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -5.59 Total: -22.13 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.27 Total: -30.72 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.38 Total: -18.99 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.82 -10.21 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759262451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.015 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds