Wall clock time and date at job start Tue Mar 31 2020 14:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47816 * 31.21170 * 3 2 1 5 5 C 1.53002 * 109.47311 * 151.21127 * 3 2 1 6 6 C 1.52998 * 109.47548 * 184.99660 * 5 3 2 7 7 O 1.45203 * 109.47284 * 271.20742 * 3 2 1 8 8 C 1.34843 * 117.00188 * 149.99855 * 7 3 2 9 9 O 1.21592 * 119.99718 * 0.02562 * 8 7 3 10 10 C 1.46742 * 119.99927 * 180.02562 * 8 7 3 11 11 C 1.36471 * 126.78053 * 359.97438 * 10 8 7 12 12 N 1.35403 * 109.76098 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.77238 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02426 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.37974 * 110.45150 * 0.24362 * 12 11 10 24 24 C 1.39123 * 133.18280 * 180.43821 * 23 12 11 25 25 C 1.37762 * 119.93551 * 179.60141 * 24 23 12 26 26 C 1.38755 * 120.63204 * 359.74538 * 25 24 23 27 27 C 1.37762 * 120.29895 * 359.97438 * 26 25 24 28 28 C 1.39263 * 119.66713 * 0.02562 * 27 26 25 29 29 H 4.18739 * 15.04069 * 0.02562 * 4 2 1 30 30 H 1.09003 * 109.46953 * 304.99819 * 5 3 2 31 31 H 1.08999 * 109.46857 * 64.99396 * 5 3 2 32 32 H 1.09008 * 109.47085 * 60.00144 * 6 5 3 33 33 H 1.09001 * 109.47506 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.47247 * 300.00435 * 6 5 3 35 35 H 1.08001 * 125.11703 * 359.97438 * 11 10 8 36 36 H 1.09004 * 109.46794 * 145.02525 * 13 12 11 37 37 H 1.09000 * 109.47559 * 25.03001 * 13 12 11 38 38 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 39 39 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.02953 * 359.34240 * 24 23 12 42 42 H 1.07997 * 119.68489 * 179.71770 * 25 24 23 43 43 H 1.07998 * 119.85171 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.16751 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0098 -0.8781 -0.5325 5 6 3.1554 1.2651 -0.6947 6 6 4.6803 1.2069 -0.8057 7 8 3.1300 -0.0280 1.3687 8 6 4.3153 -0.6329 1.5863 9 8 4.9276 -1.1226 0.6569 10 6 4.8662 -0.7002 2.9447 11 6 4.3007 -0.1999 4.0815 12 7 5.1028 -0.4547 5.1422 13 6 4.8121 -0.0614 6.5231 14 6 5.4965 1.2724 6.8284 15 6 5.1979 1.6767 8.2492 16 1 4.5819 1.0452 8.8722 17 6 5.7163 2.8497 8.7557 18 7 6.4668 3.6184 7.9971 19 14 5.3525 3.3469 10.5191 20 1 5.8611 2.3015 11.4431 21 1 6.0208 4.6392 10.8169 22 1 3.8859 3.4957 10.6990 23 6 6.2353 -1.1316 4.7386 24 6 7.3440 -1.6236 5.4201 25 6 8.3389 -2.2809 4.7303 26 6 8.2457 -2.4637 3.3580 27 6 7.1530 -1.9889 2.6662 28 6 6.1399 -1.3226 3.3511 29 1 -1.0500 -0.0006 -0.0009 30 1 2.7208 1.3319 -1.6921 31 1 2.8666 2.1406 -0.1131 32 1 4.9691 0.3314 -1.3873 33 1 5.0432 2.1075 -1.3010 34 1 5.1149 1.1401 0.1916 35 1 3.3557 0.3208 4.1281 36 1 5.1852 -0.8257 7.2048 37 1 3.7349 0.0452 6.6515 38 1 5.1233 2.0368 6.1467 39 1 6.5736 1.1658 6.7002 40 1 6.8312 4.4439 8.3533 41 1 7.4265 -1.4866 6.4882 42 1 9.2000 -2.6572 5.2626 43 1 9.0332 -2.9805 2.8298 44 1 7.0828 -2.1320 1.5981 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774208908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:39 Heat of formation + Delta-G solvation = 2.717696 kcal Electronic energy + Delta-G solvation = -26515.628892 eV Core-core repulsion = 22785.223836 eV Total energy + Delta-G solvation = -3730.405055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.59907 -41.32488 -38.20372 -37.81767 -35.88513 -35.28234 -34.06878 -33.21734 -31.94770 -30.32827 -30.19836 -28.23244 -26.95759 -24.62983 -23.98702 -23.27463 -22.74214 -21.78452 -21.05720 -19.64615 -18.96230 -18.65563 -17.80745 -17.45037 -17.21582 -16.67677 -16.55294 -16.26671 -15.80115 -15.49630 -15.30478 -14.97000 -14.76074 -14.47869 -14.45591 -14.23526 -13.81399 -13.63430 -13.46813 -13.26443 -12.87763 -12.85505 -12.78297 -12.59891 -12.39789 -12.14992 -12.05625 -11.99218 -11.87060 -11.72819 -11.67743 -11.43738 -11.35996 -11.01309 -10.65826 -10.60135 -9.26554 -8.75221 -8.25284 -6.39179 -0.07008 0.52767 0.87206 1.09252 1.41923 1.43987 1.51924 1.74038 1.76122 2.14922 2.33280 2.39886 2.94869 3.09544 3.24232 3.61676 3.67362 3.74344 3.87229 3.93136 4.04911 4.18103 4.25433 4.31349 4.40649 4.41682 4.49280 4.61042 4.66549 4.68681 4.75427 4.77992 4.91794 4.93743 5.05295 5.11677 5.26641 5.34224 5.35754 5.42470 5.49214 5.60041 5.65378 5.68999 5.79988 6.00776 6.17324 6.21517 6.52730 6.76923 6.82790 7.31990 8.86086 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010243 B = 0.003412 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.887904 B = 8204.690182 C =10011.195620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.246 4.246 3 C 0.199 3.801 4 H 0.100 0.900 5 C -0.127 4.127 6 C -0.148 4.148 7 O -0.353 6.353 8 C 0.551 3.449 9 O -0.531 6.531 10 C -0.267 4.267 11 C 0.156 3.844 12 N -0.456 5.456 13 C 0.116 3.884 14 C 0.021 3.979 15 C -0.544 4.544 16 H 0.075 0.925 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.066 3.934 24 C -0.128 4.128 25 C -0.103 4.103 26 C -0.131 4.131 27 C -0.092 4.092 28 C -0.079 4.079 29 H 0.262 0.738 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.204 0.796 36 H 0.093 0.907 37 H 0.108 0.892 38 H -0.006 1.006 39 H -0.008 1.008 40 H 0.264 0.736 41 H 0.125 0.875 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 -9.857 -13.577 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.246 4.246 3 C 0.145 3.855 4 H 0.118 0.882 5 C -0.164 4.164 6 C -0.206 4.206 7 O -0.271 6.271 8 C 0.399 3.601 9 O -0.422 6.422 10 C -0.276 4.276 11 C 0.020 3.980 12 N -0.134 5.134 13 C -0.003 4.003 14 C -0.016 4.016 15 C -0.582 4.582 16 H 0.093 0.907 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.188 1.188 23 C -0.037 4.037 24 C -0.148 4.148 25 C -0.122 4.122 26 C -0.149 4.149 27 C -0.110 4.110 28 C -0.083 4.083 29 H 0.278 0.722 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.221 0.779 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.013 0.987 39 H 0.010 0.990 40 H 0.073 0.927 41 H 0.143 0.857 42 H 0.174 0.826 43 H 0.173 0.827 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.401 -9.759 -13.522 17.862 hybrid contribution -0.052 0.767 0.782 1.097 sum -6.453 -8.992 -12.740 16.876 Atomic orbital electron populations 1.25912 0.96482 0.97876 0.94316 1.22563 0.93792 1.03294 1.04996 1.19360 0.84825 1.01191 0.80155 0.88224 1.21919 0.96629 0.95954 1.01879 1.21807 0.94888 1.02717 1.01160 1.86649 1.36415 1.71529 1.32525 1.19812 0.78406 0.73819 0.88021 1.90762 1.60114 1.46629 1.44683 1.18995 0.99823 1.18344 0.90428 1.22695 0.96237 0.94331 0.84733 1.44416 1.15899 1.44209 1.08862 1.22208 1.02705 0.98172 0.77252 1.19245 0.94772 0.91361 0.96269 1.21437 1.32198 1.06777 0.97764 0.90721 1.25961 0.94496 0.96452 1.02489 1.70112 1.34614 1.13782 1.38553 0.85461 0.78886 0.77446 0.79039 1.18937 1.21403 1.18825 1.18593 0.90992 1.00501 0.93637 1.20412 0.92827 1.01282 1.00273 1.21187 0.98256 0.98163 0.94564 1.21301 0.98175 1.01152 0.94304 1.20731 0.92792 0.97386 1.00111 1.18922 0.94998 1.02318 0.92064 0.72162 0.87609 0.90675 0.92044 0.90818 0.95204 0.77943 0.88898 0.87391 0.98718 0.98972 0.92697 0.85723 0.82556 0.82670 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 19.25 74.32 1.43 -0.67 16 2 C -0.25 -5.48 12.95 31.12 0.40 -5.08 16 3 C 0.20 4.96 2.71 28.79 0.08 5.04 16 4 H 0.10 2.54 7.16 -2.39 -0.02 2.53 16 5 C -0.13 -2.70 5.60 30.59 0.17 -2.53 16 6 C -0.15 -3.55 8.56 71.98 0.62 -2.94 16 7 O -0.35 -10.61 9.61 -57.56 -0.55 -11.16 16 8 C 0.55 18.37 6.39 70.04 0.45 18.82 16 9 O -0.53 -18.56 13.34 19.54 0.26 -18.30 16 10 C -0.27 -9.33 6.27 -19.03 -0.12 -9.45 16 11 C 0.16 5.15 11.04 83.73 0.92 6.08 16 12 N -0.46 -16.33 2.74 -515.27 -1.41 -17.74 16 13 C 0.12 4.26 5.89 86.38 0.51 4.77 16 14 C 0.02 1.04 5.30 29.85 0.16 1.20 16 15 C -0.54 -28.25 9.11 25.60 0.23 -28.02 16 16 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 17 C 0.00 0.26 5.46 84.66 0.46 0.73 16 18 N -0.93 -54.84 13.29 21.45 0.28 -54.56 16 19 Si 0.97 41.71 29.54 68.60 2.03 43.74 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 21 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 C 0.07 2.41 6.79 38.91 0.26 2.67 16 24 C -0.13 -4.17 9.97 22.37 0.22 -3.94 16 25 C -0.10 -2.73 10.01 22.28 0.22 -2.51 16 26 C -0.13 -3.41 10.03 22.28 0.22 -3.18 16 27 C -0.09 -2.90 9.85 22.40 0.22 -2.67 16 28 C -0.08 -2.85 6.27 -20.07 -0.13 -2.98 16 29 H 0.26 1.70 7.80 -4.42 -0.03 1.66 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.49 7.79 -2.38 -0.02 1.47 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.03 0.87 6.06 -2.39 -0.01 0.86 16 35 H 0.20 5.44 8.06 -2.91 -0.02 5.42 16 36 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 37 H 0.11 3.45 8.11 -2.39 -0.02 3.43 16 38 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 41 H 0.12 3.97 8.06 -2.91 -0.02 3.94 16 42 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 43 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.13 3.94 7.45 -2.91 -0.02 3.92 16 Total: -1.00 -68.81 382.79 7.94 -60.87 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.99 Total: 21.83 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 6.34 Total: -24.68 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -1.13 Total: -72.30 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.29 Total: -29.46 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -68.81 7.94 -60.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774208908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.588 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds