Wall clock time and date at job start Tue Mar 31 2020 14:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47383 * 2 1 4 4 N 1.46899 * 109.47062 * 120.00144 * 2 1 3 5 5 C 1.46903 * 110.99639 * 270.62888 * 4 2 1 6 6 C 1.52998 * 109.47426 * 75.87922 * 5 4 2 7 7 S 1.81394 * 109.47123 * 173.97927 * 6 5 4 8 8 C 1.81402 * 101.92065 * 180.02562 * 7 6 5 9 9 O 1.42101 * 108.58147 * 294.48278 * 7 6 5 10 10 O 1.42104 * 108.57942 * 65.51362 * 7 6 5 11 11 C 1.46899 * 111.00498 * 146.67294 * 4 2 1 12 12 C 1.50697 * 109.46979 * 293.95443 * 11 4 2 13 13 C 1.38638 * 119.74999 * 269.72667 * 12 11 4 14 14 C 1.37619 * 120.25189 * 179.72479 * 13 12 11 15 15 C 1.40721 * 119.73961 * 0.56267 * 14 13 12 16 16 C 1.41392 * 120.24031 * 179.68455 * 15 14 13 17 17 H 1.07999 * 120.00013 * 209.19397 * 16 15 14 18 18 C 1.39942 * 120.00178 * 29.19394 * 16 15 14 19 19 N 1.30828 * 120.00011 * 10.22889 * 18 16 15 20 20 Si 1.86810 * 120.00129 * 190.23019 * 18 16 15 21 21 H 1.48499 * 109.46817 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46742 * 119.99887 * 20 18 16 23 23 H 1.48496 * 109.46958 * 239.99972 * 20 18 16 24 24 C 1.40712 * 119.51102 * 359.70984 * 15 14 13 25 25 C 1.37612 * 119.75044 * 359.97438 * 24 15 14 26 26 H 1.08994 * 109.47352 * 308.53810 * 1 2 3 27 27 H 1.09003 * 109.47300 * 68.53782 * 1 2 3 28 28 H 1.09005 * 109.47403 * 188.53506 * 1 2 3 29 29 H 1.09005 * 109.47117 * 239.99200 * 2 1 3 30 30 H 1.08999 * 109.47031 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46820 * 299.99631 * 3 2 1 32 32 H 1.08997 * 109.47518 * 59.99740 * 3 2 1 33 33 H 1.09008 * 109.47028 * 195.87708 * 5 4 2 34 34 H 1.08993 * 109.47236 * 315.87673 * 5 4 2 35 35 H 1.08997 * 109.47376 * 293.98358 * 6 5 4 36 36 H 1.09003 * 109.47019 * 53.97767 * 6 5 4 37 37 H 1.08994 * 109.47546 * 60.00242 * 8 7 6 38 38 H 1.08997 * 109.47464 * 180.02562 * 8 7 6 39 39 H 1.09005 * 109.47110 * 300.00030 * 8 7 6 40 40 H 1.09002 * 109.46843 * 53.94977 * 11 4 2 41 41 H 1.09001 * 109.47454 * 173.95356 * 11 4 2 42 42 H 1.08007 * 119.87436 * 359.97438 * 13 12 11 43 43 H 1.07997 * 120.13033 * 180.28120 * 14 13 12 44 44 H 0.96997 * 119.99448 * 179.97438 * 19 18 16 45 45 H 1.08006 * 120.12475 * 179.97438 * 24 15 14 46 46 H 1.07999 * 119.87973 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.1809 0.2445 2.3193 6 6 0.8073 0.5872 2.8994 7 16 1.0159 1.6005 4.3894 8 6 -0.7033 1.8803 4.8960 9 8 1.6584 0.8154 5.3845 10 8 1.5862 2.8466 4.0134 11 6 3.2755 -1.4023 0.9218 12 6 3.0157 -2.5191 -0.0560 13 6 2.6812 -3.7802 0.4129 14 6 2.4363 -4.8061 -0.4710 15 6 2.5381 -4.5742 -1.8552 16 6 2.2952 -5.6224 -2.7726 17 1 2.7942 -5.6281 -3.7304 18 6 1.4084 -6.6524 -2.4394 19 7 0.6551 -6.5483 -1.3749 20 14 1.3003 -8.1761 -3.5148 21 1 2.2498 -8.0495 -4.6495 22 1 1.6478 -9.3751 -2.7106 23 1 -0.0823 -8.3151 -4.0386 24 6 2.8839 -3.2917 -2.3195 25 6 3.1180 -2.2791 -1.4176 26 1 -0.3634 0.6402 0.8038 27 1 -0.3634 0.3760 -0.9564 28 1 -0.3634 -1.0163 0.1525 29 1 1.8933 -0.5140 -0.8900 30 1 3.1300 1.4423 -0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 2.7971 -0.2154 3.0919 34 1 2.6630 1.1553 1.9644 35 1 0.2290 1.1422 2.1607 36 1 0.2815 -0.3325 3.1560 37 1 -1.1843 0.9225 5.0941 38 1 -0.7213 2.4900 5.7994 39 1 -1.2375 2.3972 4.0987 40 1 3.9990 -0.7073 0.4957 41 1 3.6716 -1.8161 1.8492 42 1 2.6086 -3.9570 1.4760 43 1 2.1714 -5.7866 -0.1036 44 1 0.0402 -7.2621 -1.1443 45 1 2.9652 -3.1028 -3.3798 46 1 3.3839 -1.2941 -1.7717 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784205273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:48 Heat of formation + Delta-G solvation = -39.616861 kcal Electronic energy + Delta-G solvation = -25874.318761 eV Core-core repulsion = 22277.521893 eV Total energy + Delta-G solvation = -3596.796868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.10004 -37.22886 -37.14164 -36.19433 -33.86141 -32.12168 -31.78528 -29.96836 -29.41981 -29.12738 -27.21729 -26.14910 -23.39159 -23.01884 -21.02753 -20.12559 -19.29706 -18.97134 -17.28825 -16.94311 -16.68857 -16.21207 -15.80103 -15.32399 -15.07414 -14.52012 -14.04155 -13.96645 -13.59853 -13.52022 -13.50157 -13.22446 -13.03296 -12.54880 -12.47742 -12.42343 -12.24671 -12.16130 -11.96350 -11.88818 -11.67060 -11.39010 -11.22129 -11.15695 -11.05141 -10.97377 -10.87181 -10.72001 -10.45833 -10.38006 -10.08702 -9.55471 -9.34763 -9.20335 -8.00076 -7.44452 -7.24500 -6.69778 -4.37074 -0.23419 2.53537 2.72182 3.04453 3.07879 3.12782 3.13721 3.40004 3.79299 3.94405 4.22320 4.45823 4.49291 4.58880 4.69900 4.79613 5.10109 5.21826 5.30145 5.33792 5.46179 5.52508 5.62130 5.68301 5.75027 5.77535 5.87347 5.96000 6.06346 6.09776 6.21211 6.31260 6.42277 6.45881 6.57878 6.94659 7.08796 7.27775 7.31882 7.39911 7.44104 7.61975 7.85252 8.06625 8.12097 8.30637 8.65721 8.90898 8.97371 10.24027 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.002694 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.227654 B =10391.735185 C =10767.961770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.063 3.937 3 C -0.186 4.186 4 N -0.516 5.516 5 C 0.054 3.946 6 C -0.607 4.607 7 S 2.415 3.585 8 C -0.656 4.656 9 O -0.941 6.941 10 O -0.944 6.944 11 C 0.115 3.885 12 C -0.200 4.200 13 C -0.082 4.082 14 C -0.158 4.158 15 C 0.111 3.889 16 C -0.464 4.464 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.801 5.801 20 Si 0.909 3.091 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.275 1.275 24 C -0.221 4.221 25 C -0.089 4.089 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.026 0.974 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.278 0.722 45 H 0.090 0.910 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 13.641 8.247 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 C -0.244 4.244 4 N -0.240 5.240 5 C -0.076 4.076 6 C -0.737 4.737 7 S 2.598 3.402 8 C -0.806 4.806 9 O -0.938 6.938 10 O -0.942 6.942 11 C -0.011 4.011 12 C -0.202 4.202 13 C -0.101 4.101 14 C -0.177 4.177 15 C 0.109 3.891 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.427 5.427 20 Si 0.734 3.266 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.201 1.201 24 C -0.241 4.241 25 C -0.108 4.108 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.137 0.863 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.423 13.468 8.931 16.519 hybrid contribution -0.583 -0.392 -1.061 1.273 sum -4.006 13.076 7.870 15.779 Atomic orbital electron populations 1.21955 0.94967 1.02594 1.00269 1.21891 0.95857 0.92026 0.94754 1.22527 1.01291 0.98494 1.02107 1.62334 1.30622 1.26237 1.04764 1.21894 0.92150 0.97680 0.95839 1.30613 1.08110 1.15948 1.19021 1.07951 0.78055 0.76384 0.77855 1.30266 1.25720 1.11979 1.12609 1.93602 1.72004 1.71065 1.57121 1.93589 1.74839 1.42128 1.83601 1.20845 0.88365 0.93726 0.98160 1.18846 1.14664 0.94156 0.92484 1.20520 0.99223 0.92996 0.97407 1.21365 1.04728 0.98602 0.93039 1.17637 0.87796 0.91141 0.92531 1.19606 1.22496 1.04984 1.02338 0.90640 1.25876 0.94062 0.99131 0.95257 1.69804 1.17407 1.32122 1.23398 0.86251 0.78794 0.80992 0.80581 1.18559 1.19828 1.20057 1.20987 1.12433 0.93640 0.97053 1.20338 1.00923 0.96625 0.92899 0.93336 0.93002 0.91337 0.88288 0.92724 0.92149 0.91997 0.89982 0.91933 0.84567 0.83832 0.85193 0.85470 0.85415 0.95539 0.91349 0.89423 0.86343 0.91103 0.89174 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.03 37.16 0.34 -1.50 16 2 C 0.06 0.90 2.65 -67.72 -0.18 0.72 16 3 C -0.19 -2.23 7.85 37.15 0.29 -1.93 16 4 N -0.52 -7.75 4.32 -228.09 -0.99 -8.73 16 5 C 0.05 0.66 4.49 -3.82 -0.02 0.64 16 6 C -0.61 -5.49 5.01 37.16 0.19 -5.30 16 7 S 2.42 21.00 5.36 -107.50 -0.58 20.42 16 8 C -0.66 -3.27 10.62 101.05 1.07 -2.20 16 9 O -0.94 -11.90 18.10 -57.83 -1.05 -12.95 16 10 O -0.94 -11.37 18.10 -57.83 -1.05 -12.41 16 11 C 0.12 1.94 5.08 -4.98 -0.03 1.91 16 12 C -0.20 -4.12 5.04 -104.33 -0.53 -4.64 16 13 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 14 C -0.16 -4.02 8.66 -38.87 -0.34 -4.36 16 15 C 0.11 2.91 5.55 -106.83 -0.59 2.32 16 16 C -0.46 -12.19 9.06 -37.74 -0.34 -12.53 16 17 H 0.08 1.92 7.87 -52.49 -0.41 1.51 16 18 C 0.07 1.83 5.26 -17.34 -0.09 1.73 16 19 N -0.80 -20.60 10.84 55.55 0.60 -20.00 16 20 Si 0.91 18.66 29.57 -169.99 -5.03 13.63 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 24 C -0.22 -5.28 9.80 -38.88 -0.38 -5.66 16 25 C -0.09 -1.89 7.95 -39.66 -0.32 -2.21 16 26 H 0.05 0.50 5.09 -51.93 -0.26 0.24 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.10 1.66 4.55 -51.93 -0.24 1.42 16 30 H 0.05 0.66 7.84 -51.93 -0.41 0.26 16 31 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.06 0.67 5.34 -51.93 -0.28 0.39 16 33 H 0.08 0.99 7.73 -51.92 -0.40 0.59 16 34 H 0.06 0.73 5.21 -51.93 -0.27 0.46 16 35 H 0.14 1.02 4.52 -51.93 -0.23 0.79 16 36 H 0.14 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 40 H 0.03 0.42 7.95 -51.93 -0.41 0.01 16 41 H 0.07 1.10 7.76 -51.93 -0.40 0.70 16 42 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 43 H 0.12 3.15 6.23 -52.49 -0.33 2.83 16 44 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 45 H 0.09 2.04 8.06 -52.48 -0.42 1.62 16 46 H 0.08 1.58 7.27 -52.49 -0.38 1.19 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -32.56 372.10 -10.74 -43.30 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.97 Total: 6.38 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -1.30 Total: -35.25 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: -0.38 Total: -28.73 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -2.09 Total: -25.36 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: 21.00 SS G_CDS: -0.58 Total: 20.42 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.56 -10.74 -43.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784205273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.687 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds