Wall clock time and date at job start Tue Mar 31 2020 14:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47383 * 2 1 4 4 N 1.46899 * 109.47062 * 120.00144 * 2 1 3 5 5 C 1.46903 * 110.99639 * 270.62888 * 4 2 1 6 6 C 1.52998 * 109.47426 * 75.87922 * 5 4 2 7 7 S 1.81394 * 109.47123 * 173.97927 * 6 5 4 8 8 C 1.81402 * 101.92065 * 180.02562 * 7 6 5 9 9 O 1.42101 * 108.58147 * 294.48278 * 7 6 5 10 10 O 1.42104 * 108.57942 * 65.51362 * 7 6 5 11 11 C 1.46899 * 111.00498 * 146.67294 * 4 2 1 12 12 C 1.50697 * 109.46979 * 293.95443 * 11 4 2 13 13 C 1.38638 * 119.74999 * 269.72667 * 12 11 4 14 14 C 1.37619 * 120.25189 * 179.72479 * 13 12 11 15 15 C 1.40721 * 119.73961 * 0.56267 * 14 13 12 16 16 C 1.41392 * 120.24031 * 179.68455 * 15 14 13 17 17 H 1.07999 * 120.00013 * 209.19397 * 16 15 14 18 18 C 1.39942 * 120.00178 * 29.19394 * 16 15 14 19 19 N 1.30828 * 120.00011 * 10.22889 * 18 16 15 20 20 Si 1.86810 * 120.00129 * 190.23019 * 18 16 15 21 21 H 1.48499 * 109.46817 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46742 * 119.99887 * 20 18 16 23 23 H 1.48496 * 109.46958 * 239.99972 * 20 18 16 24 24 C 1.40712 * 119.51102 * 359.70984 * 15 14 13 25 25 C 1.37612 * 119.75044 * 359.97438 * 24 15 14 26 26 H 1.08994 * 109.47352 * 308.53810 * 1 2 3 27 27 H 1.09003 * 109.47300 * 68.53782 * 1 2 3 28 28 H 1.09005 * 109.47403 * 188.53506 * 1 2 3 29 29 H 1.09005 * 109.47117 * 239.99200 * 2 1 3 30 30 H 1.08999 * 109.47031 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46820 * 299.99631 * 3 2 1 32 32 H 1.08997 * 109.47518 * 59.99740 * 3 2 1 33 33 H 1.09008 * 109.47028 * 195.87708 * 5 4 2 34 34 H 1.08993 * 109.47236 * 315.87673 * 5 4 2 35 35 H 1.08997 * 109.47376 * 293.98358 * 6 5 4 36 36 H 1.09003 * 109.47019 * 53.97767 * 6 5 4 37 37 H 1.08994 * 109.47546 * 60.00242 * 8 7 6 38 38 H 1.08997 * 109.47464 * 180.02562 * 8 7 6 39 39 H 1.09005 * 109.47110 * 300.00030 * 8 7 6 40 40 H 1.09002 * 109.46843 * 53.94977 * 11 4 2 41 41 H 1.09001 * 109.47454 * 173.95356 * 11 4 2 42 42 H 1.08007 * 119.87436 * 359.97438 * 13 12 11 43 43 H 1.07997 * 120.13033 * 180.28120 * 14 13 12 44 44 H 0.96997 * 119.99448 * 179.97438 * 19 18 16 45 45 H 1.08006 * 120.12475 * 179.97438 * 24 15 14 46 46 H 1.07999 * 119.87973 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.1809 0.2445 2.3193 6 6 0.8073 0.5872 2.8994 7 16 1.0159 1.6005 4.3894 8 6 -0.7033 1.8803 4.8960 9 8 1.6584 0.8154 5.3845 10 8 1.5862 2.8466 4.0134 11 6 3.2755 -1.4023 0.9218 12 6 3.0157 -2.5191 -0.0560 13 6 2.6812 -3.7802 0.4129 14 6 2.4363 -4.8061 -0.4710 15 6 2.5381 -4.5742 -1.8552 16 6 2.2952 -5.6224 -2.7726 17 1 2.7942 -5.6281 -3.7304 18 6 1.4084 -6.6524 -2.4394 19 7 0.6551 -6.5483 -1.3749 20 14 1.3003 -8.1761 -3.5148 21 1 2.2498 -8.0495 -4.6495 22 1 1.6478 -9.3751 -2.7106 23 1 -0.0823 -8.3151 -4.0386 24 6 2.8839 -3.2917 -2.3195 25 6 3.1180 -2.2791 -1.4176 26 1 -0.3634 0.6402 0.8038 27 1 -0.3634 0.3760 -0.9564 28 1 -0.3634 -1.0163 0.1525 29 1 1.8933 -0.5140 -0.8900 30 1 3.1300 1.4423 -0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 2.7971 -0.2154 3.0919 34 1 2.6630 1.1553 1.9644 35 1 0.2290 1.1422 2.1607 36 1 0.2815 -0.3325 3.1560 37 1 -1.1843 0.9225 5.0941 38 1 -0.7213 2.4900 5.7994 39 1 -1.2375 2.3972 4.0987 40 1 3.9990 -0.7073 0.4957 41 1 3.6716 -1.8161 1.8492 42 1 2.6086 -3.9570 1.4760 43 1 2.1714 -5.7866 -0.1036 44 1 0.0402 -7.2621 -1.1443 45 1 2.9652 -3.1028 -3.3798 46 1 3.3839 -1.2941 -1.7717 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784205273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:47 Heat of formation + Delta-G solvation = -61.711911 kcal Electronic energy + Delta-G solvation = -25875.276875 eV Core-core repulsion = 22277.521893 eV Total energy + Delta-G solvation = -3597.754981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.38811 -38.86402 -37.95037 -36.99891 -35.64967 -33.30285 -33.00756 -31.21994 -30.86912 -30.23354 -28.22780 -27.73435 -24.94458 -24.04503 -22.82119 -21.79537 -20.42358 -19.73573 -19.17199 -17.84338 -17.50217 -17.17601 -16.92966 -16.64798 -16.24909 -15.93375 -15.70035 -15.32566 -14.89888 -14.61397 -14.23351 -14.01315 -13.94739 -13.85479 -13.75922 -13.56496 -13.38663 -13.33293 -13.14460 -13.07330 -12.98873 -12.81056 -12.72618 -12.40334 -12.23511 -12.13219 -12.04709 -11.92800 -11.78535 -11.67436 -11.46932 -11.19070 -11.03888 -10.94020 -9.30369 -9.21718 -9.03305 -8.55335 -6.32942 -0.88826 0.96828 1.17105 1.38321 1.49362 1.52713 1.92197 2.22557 2.64147 2.79787 3.16117 3.21413 3.68743 3.78722 3.89121 4.04720 4.14883 4.20321 4.27432 4.32639 4.34064 4.46319 4.50001 4.58873 4.59364 4.64739 4.79730 4.80956 4.91996 4.96681 5.00278 5.01841 5.09100 5.15458 5.19699 5.38279 5.44234 5.49274 5.52404 5.74993 5.96063 6.13728 6.18004 6.29239 6.34721 6.42938 6.75212 6.98627 7.07222 8.40627 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.002694 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.227654 B =10391.735185 C =10767.961770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.058 3.942 3 C -0.182 4.182 4 N -0.526 5.526 5 C 0.044 3.956 6 C -0.606 4.606 7 S 2.426 3.574 8 C -0.635 4.635 9 O -0.988 6.988 10 O -0.982 6.982 11 C 0.117 3.883 12 C -0.182 4.182 13 C -0.089 4.089 14 C -0.180 4.180 15 C 0.078 3.922 16 C -0.503 4.503 17 H 0.071 0.929 18 C 0.031 3.969 19 N -0.834 5.834 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.266 1.266 23 H -0.267 1.267 24 C -0.236 4.236 25 C -0.084 4.084 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.155 0.845 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.284 0.716 45 H 0.094 0.906 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.997 15.524 8.934 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.050 4.050 3 C -0.240 4.240 4 N -0.250 5.250 5 C -0.085 4.085 6 C -0.735 4.735 7 S 2.612 3.388 8 C -0.789 4.789 9 O -0.985 6.985 10 O -0.979 6.979 11 C -0.010 4.010 12 C -0.184 4.184 13 C -0.108 4.108 14 C -0.200 4.200 15 C 0.076 3.924 16 C -0.533 4.533 17 H 0.089 0.911 18 C -0.182 4.182 19 N -0.462 5.462 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.190 1.190 23 H -0.191 1.191 24 C -0.256 4.256 25 C -0.103 4.103 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.173 0.827 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.158 0.842 39 H 0.173 0.827 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.709 15.364 9.611 18.724 hybrid contribution -0.200 -0.793 -1.169 1.427 sum -4.909 14.570 8.443 17.541 Atomic orbital electron populations 1.21950 0.94054 1.01638 1.02026 1.21903 0.96655 0.93127 0.93284 1.22480 1.01104 0.96924 1.03473 1.62250 1.29338 1.27572 1.05853 1.22023 0.94373 0.97290 0.94805 1.30583 1.06501 1.16876 1.19588 1.07379 0.79691 0.74898 0.76800 1.30073 1.20941 1.13859 1.13989 1.93545 1.74767 1.71910 1.58303 1.93539 1.77208 1.43224 1.83962 1.20773 0.89777 0.92994 0.97427 1.19250 1.11390 0.94532 0.93231 1.20735 0.98948 0.93308 0.97803 1.21290 1.06581 0.98630 0.93487 1.17952 0.89126 0.92299 0.93015 1.19820 1.24115 1.06737 1.02640 0.91099 1.26701 0.93123 1.01749 0.96597 1.69872 1.18060 1.33281 1.24944 0.85159 0.78975 0.76888 0.78645 1.18370 1.19033 1.19149 1.21181 1.12851 0.93678 0.97876 1.20610 0.99678 0.97134 0.92852 0.90224 0.92210 0.94118 0.91048 0.93041 0.90925 0.90501 0.90308 0.91216 0.82719 0.82796 0.83129 0.84229 0.82707 0.94285 0.90626 0.88036 0.88410 0.90507 0.88819 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.03 71.98 0.65 -2.69 16 2 C 0.06 1.56 2.65 44.91 0.12 1.68 16 3 C -0.18 -3.84 7.85 71.98 0.56 -3.27 16 4 N -0.53 -14.89 4.32 -875.53 -3.78 -18.67 16 5 C 0.04 0.99 4.49 86.30 0.39 1.37 16 6 C -0.61 -9.25 5.01 71.98 0.36 -8.89 16 7 S 2.43 36.83 5.36 -56.49 -0.30 36.53 16 8 C -0.64 -3.55 10.62 113.37 1.20 -2.35 16 9 O -0.99 -24.07 18.10 -127.37 -2.30 -26.37 16 10 O -0.98 -21.91 18.10 -127.37 -2.31 -24.21 16 11 C 0.12 3.77 5.08 85.56 0.43 4.20 16 12 C -0.18 -7.45 5.04 -19.67 -0.10 -7.55 16 13 C -0.09 -4.11 9.67 22.22 0.21 -3.89 16 14 C -0.18 -9.58 8.66 22.73 0.20 -9.39 16 15 C 0.08 4.27 5.55 -21.29 -0.12 4.15 16 16 C -0.50 -27.63 9.06 23.46 0.21 -27.42 16 17 H 0.07 3.78 7.87 -2.91 -0.02 3.76 16 18 C 0.03 1.61 5.26 85.26 0.45 2.06 16 19 N -0.83 -44.53 10.84 21.83 0.24 -44.30 16 20 Si 0.98 39.12 29.57 68.60 2.03 41.15 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 24 C -0.24 -11.56 9.80 22.73 0.22 -11.33 16 25 C -0.08 -3.55 7.95 22.22 0.18 -3.38 16 26 H 0.08 1.36 5.09 -2.39 -0.01 1.34 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.07 2.30 4.55 -2.38 -0.01 2.29 16 30 H 0.05 1.12 7.84 -2.39 -0.02 1.10 16 31 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.08 1.39 5.34 -2.39 -0.01 1.38 16 33 H 0.08 1.81 7.73 -2.38 -0.02 1.79 16 34 H 0.07 1.47 5.21 -2.39 -0.01 1.46 16 35 H 0.16 1.70 4.52 -2.39 -0.01 1.69 16 36 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.04 1.16 7.95 -2.39 -0.02 1.15 16 41 H 0.08 2.33 7.76 -2.39 -0.02 2.31 16 42 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.10 5.52 6.23 -2.91 -0.02 5.50 16 44 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 45 H 0.09 4.38 8.06 -2.91 -0.02 4.35 16 46 H 0.11 4.05 7.27 -2.91 -0.02 4.03 16 Total: -1.00 -74.10 372.10 -0.48 -74.58 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.97 Total: 27.99 kcal Atomic # 6 Polarization: -71.67 SS G_CDS: 4.98 Total: -66.70 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -3.55 Total: -62.97 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -4.61 Total: -50.59 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 16 Polarization: 36.83 SS G_CDS: -0.30 Total: 36.53 kcal Total: -74.10 -0.48 -74.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784205273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.866 kcal (2) G-P(sol) polarization free energy of solvation -74.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds