Wall clock time and date at job start Tue Mar 31 2020 14:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47406 * 2 1 4 4 H 1.09008 * 109.46678 * 304.99444 * 3 2 1 5 5 C 1.50695 * 109.47336 * 185.00079 * 3 2 1 6 6 H 1.08001 * 120.00195 * 239.71847 * 5 3 2 7 7 C 1.37875 * 120.00567 * 59.99573 * 5 3 2 8 8 N 1.31517 * 119.99527 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00584 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46795 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47032 * 119.99679 * 9 7 5 12 12 H 1.48503 * 109.47262 * 240.00150 * 9 7 5 13 13 O 1.45196 * 109.47337 * 64.99410 * 3 2 1 14 14 C 1.34709 * 117.00155 * 270.00435 * 13 3 2 15 15 O 1.21471 * 120.00125 * 0.02562 * 14 13 3 16 16 C 1.47748 * 119.99848 * 179.97438 * 14 13 3 17 17 C 1.39670 * 120.11351 * 0.02562 * 16 14 13 18 18 C 1.37977 * 120.00243 * 180.02562 * 17 16 14 19 19 C 1.38254 * 120.23307 * 359.97438 * 18 17 16 20 20 C 1.39010 * 120.22690 * 0.02562 * 19 18 17 21 21 N 1.39746 * 120.00086 * 179.97438 * 20 19 18 22 22 C 1.39708 * 120.00049 * 205.14357 * 21 20 19 23 23 C 1.38933 * 120.07486 * 211.98811 * 22 21 20 24 24 C 1.38097 * 119.92001 * 179.76950 * 23 22 21 25 25 C 1.38295 * 120.07819 * 0.51359 * 24 23 22 26 26 C 1.38295 * 120.14993 * 359.74357 * 25 24 23 27 27 C 1.38096 * 120.07488 * 359.97438 * 26 25 24 28 28 C 1.38680 * 119.99447 * 359.68161 * 20 19 18 29 29 H 1.09001 * 109.46916 * 60.00638 * 1 2 3 30 30 H 1.09006 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47120 * 300.00183 * 1 2 3 32 32 H 1.08997 * 109.47629 * 239.99308 * 2 1 3 33 33 H 1.09003 * 109.47428 * 119.99377 * 2 1 3 34 34 H 0.97004 * 119.99919 * 179.97438 * 8 7 5 35 35 H 1.08002 * 120.00019 * 359.97374 * 17 16 14 36 36 H 1.07990 * 119.88607 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.88244 * 179.97438 * 19 18 17 38 38 H 0.97004 * 120.00003 * 25.14503 * 21 20 19 39 39 H 1.07997 * 120.03720 * 0.02819 * 23 22 21 40 40 H 1.07997 * 119.95909 * 180.25613 * 24 23 22 41 41 H 1.07997 * 119.92507 * 179.72194 * 25 24 23 42 42 H 1.08000 * 119.96175 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.03515 * 179.97438 * 27 26 25 44 44 H 1.08002 * 120.11640 * 180.29722 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8420 5 6 3.5419 1.4443 -0.1238 6 1 4.1470 1.8928 0.6501 7 6 4.1434 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8799 -1.3811 10 1 6.5988 1.5441 -0.1930 11 1 6.4962 -0.5191 -1.4624 12 1 6.4001 1.6155 -2.6091 13 8 1.6559 2.0917 1.2406 14 6 0.4685 2.7278 1.2558 15 8 -0.2272 2.7393 0.2601 16 6 0.0118 3.4104 2.4840 17 6 0.8096 3.3982 3.6304 18 6 0.3806 4.0359 4.7763 19 6 -0.8378 4.6890 4.7949 20 6 -1.6395 4.7072 3.6594 21 7 -2.8704 5.3684 3.6837 22 6 -3.8876 4.9832 2.8069 23 6 -4.7882 5.9265 2.3279 24 6 -5.7895 5.5431 1.4576 25 6 -5.9029 4.2201 1.0711 26 6 -5.0114 3.2777 1.5501 27 6 -4.0042 3.6552 2.4161 28 6 -1.2149 4.0745 2.5007 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.8293 -0.0605 -2.9502 35 1 1.7619 2.8888 3.6202 36 1 0.9988 4.0249 5.6617 37 1 -1.1682 5.1860 5.6950 38 1 -3.0186 6.0947 4.3093 39 1 -4.7027 6.9590 2.6326 40 1 -6.4874 6.2766 1.0817 41 1 -6.6897 3.9222 0.3939 42 1 -5.1025 2.2454 1.2459 43 1 -3.3085 2.9185 2.7901 44 1 -1.8340 4.0915 1.6160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:43 Heat of formation + Delta-G solvation = -35.400739 kcal Electronic energy + Delta-G solvation = -26753.987806 eV Core-core repulsion = 23021.929811 eV Total energy + Delta-G solvation = -3732.057995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.42602 -39.50113 -38.38782 -35.79871 -35.42860 -33.47578 -31.54626 -31.24929 -31.03148 -30.31424 -28.28437 -27.24331 -24.44845 -23.15951 -22.92923 -22.61065 -21.30657 -20.72132 -19.51321 -17.92354 -17.64775 -16.58164 -16.48423 -16.39089 -15.71648 -15.23854 -15.20283 -14.94698 -14.47122 -14.38366 -14.01288 -13.87967 -13.58673 -13.09488 -12.98066 -12.82169 -12.73952 -12.07591 -11.83715 -11.75717 -11.49522 -11.38582 -11.30574 -11.15981 -11.12586 -10.95919 -10.75214 -10.62665 -10.26457 -9.79093 -9.63614 -9.35615 -9.07209 -8.99126 -8.95397 -8.78144 -8.44465 -7.43685 -6.17556 -4.24391 0.87927 1.12417 1.28734 1.64225 3.03360 3.11264 3.24187 3.31020 3.35697 3.67205 3.70933 4.03525 4.34011 4.74057 4.83130 4.87726 4.93924 5.06312 5.14537 5.22952 5.31775 5.36718 5.39690 5.44099 5.51536 5.81542 5.88743 5.91203 6.11581 6.21637 6.25454 6.31787 6.33689 6.42855 6.47006 6.49018 6.54021 6.63227 6.81219 6.89752 6.98788 7.18898 7.23601 7.25981 7.43737 7.62919 7.75204 7.95272 8.16742 8.64302 8.90122 9.40704 10.89319 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.003078 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.430923 B = 9095.946643 C =10186.771214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.349 6.349 14 C 0.494 3.506 15 O -0.509 6.509 16 C -0.077 4.077 17 C -0.098 4.098 18 C -0.099 4.099 19 C -0.146 4.146 20 C 0.167 3.833 21 N -0.687 5.687 22 C 0.178 3.822 23 C -0.167 4.167 24 C -0.090 4.090 25 C -0.153 4.153 26 C -0.084 4.084 27 C -0.158 4.158 28 C -0.111 4.111 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.265 0.735 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.409 0.591 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.913 9.078 13.106 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.265 6.265 14 C 0.338 3.662 15 O -0.400 6.400 16 C -0.079 4.079 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.168 4.168 20 C 0.070 3.930 21 N -0.311 5.311 22 C 0.081 3.919 23 C -0.188 4.188 24 C -0.109 4.109 25 C -0.172 4.172 26 C -0.103 4.103 27 C -0.179 4.179 28 C -0.132 4.132 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.245 0.755 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.037 8.878 12.537 21.497 hybrid contribution 0.828 0.220 -0.061 0.859 sum -14.209 9.098 12.476 20.984 Atomic orbital electron populations 1.21860 0.98378 0.98994 1.00787 1.22017 0.92649 0.99298 1.03373 1.20710 0.95044 0.88772 0.78562 0.93466 1.21073 0.89628 1.38722 1.06353 0.91255 1.24886 0.99222 0.94813 0.95060 1.69905 1.35262 1.37930 1.09434 0.86236 0.83935 0.77860 0.78214 1.19473 1.20729 1.20780 1.86524 1.33501 1.62325 1.44134 1.20935 0.81120 0.76964 0.87213 1.90778 1.55528 1.58528 1.35194 1.19243 0.95133 1.00197 0.93281 1.21497 1.00118 0.98400 0.91693 1.20915 0.95527 0.97034 0.98246 1.20913 0.96195 1.03325 0.96371 1.17494 0.86125 0.96028 0.93368 1.41983 1.09948 1.38696 1.40441 1.17722 0.89192 0.92781 0.92209 1.20808 0.98519 0.98328 1.01160 1.20921 0.97305 0.96174 0.96481 1.21071 1.00567 0.93418 1.02178 1.21028 0.93741 0.99831 0.95670 1.21076 1.00534 0.94359 1.01905 1.21050 0.95876 0.99000 0.97252 0.92800 0.94819 0.94937 0.87312 0.93940 0.92457 0.84057 0.85104 0.85690 0.75483 0.86047 0.85971 0.86128 0.85703 0.85604 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.56 37.16 0.32 -2.87 16 2 C -0.14 -3.39 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.92 2.25 -27.89 -0.06 5.86 16 4 H 0.05 1.40 7.16 -51.92 -0.37 1.03 16 5 C -0.52 -14.53 8.90 -34.44 -0.31 -14.83 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.07 11.29 55.43 0.63 -24.45 16 9 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 O -0.35 -8.35 9.05 -40.52 -0.37 -8.72 16 14 C 0.49 10.76 6.35 34.62 0.22 10.98 16 15 O -0.51 -12.17 13.53 -19.24 -0.26 -12.43 16 16 C -0.08 -1.33 5.87 -105.01 -0.62 -1.95 16 17 C -0.10 -1.43 9.61 -39.14 -0.38 -1.81 16 18 C -0.10 -1.11 10.02 -39.67 -0.40 -1.51 16 19 C -0.15 -1.54 9.93 -39.29 -0.39 -1.93 16 20 C 0.17 2.06 6.05 -83.80 -0.51 1.55 16 21 N -0.69 -7.05 5.46 -8.44 -0.05 -7.10 16 22 C 0.18 2.03 5.90 -83.76 -0.49 1.54 16 23 C -0.17 -1.66 9.96 -39.38 -0.39 -2.05 16 24 C -0.09 -0.86 10.04 -39.61 -0.40 -1.25 16 25 C -0.15 -1.55 10.04 -39.54 -0.40 -1.95 16 26 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 27 C -0.16 -1.97 7.75 -39.38 -0.31 -2.27 16 28 C -0.11 -1.71 7.43 -38.95 -0.29 -2.00 16 29 H 0.05 1.26 7.79 -51.93 -0.40 0.85 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.70 6.06 -51.93 -0.31 0.39 16 32 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 33 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.14 2.09 7.61 -52.49 -0.40 1.69 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.41 3.03 8.89 -40.82 -0.36 2.67 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.13 1.68 6.62 -52.49 -0.35 1.33 16 44 H 0.14 2.37 5.93 -52.49 -0.31 2.05 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -31.16 366.44 -10.33 -41.48 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.75 Total: 7.47 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -5.03 Total: -17.78 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.58 Total: -31.54 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.63 Total: -21.15 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.16 -10.33 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.082 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds