Wall clock time and date at job start Tue Mar 31 2020 14:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47406 * 2 1 4 4 H 1.09008 * 109.46678 * 304.99444 * 3 2 1 5 5 C 1.50695 * 109.47336 * 185.00079 * 3 2 1 6 6 H 1.08001 * 120.00195 * 239.71847 * 5 3 2 7 7 C 1.37875 * 120.00567 * 59.99573 * 5 3 2 8 8 N 1.31517 * 119.99527 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00584 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46795 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47032 * 119.99679 * 9 7 5 12 12 H 1.48503 * 109.47262 * 240.00150 * 9 7 5 13 13 O 1.45196 * 109.47337 * 64.99410 * 3 2 1 14 14 C 1.34709 * 117.00155 * 270.00435 * 13 3 2 15 15 O 1.21471 * 120.00125 * 0.02562 * 14 13 3 16 16 C 1.47748 * 119.99848 * 179.97438 * 14 13 3 17 17 C 1.39670 * 120.11351 * 0.02562 * 16 14 13 18 18 C 1.37977 * 120.00243 * 180.02562 * 17 16 14 19 19 C 1.38254 * 120.23307 * 359.97438 * 18 17 16 20 20 C 1.39010 * 120.22690 * 0.02562 * 19 18 17 21 21 N 1.39746 * 120.00086 * 179.97438 * 20 19 18 22 22 C 1.39708 * 120.00049 * 205.14357 * 21 20 19 23 23 C 1.38933 * 120.07486 * 211.98811 * 22 21 20 24 24 C 1.38097 * 119.92001 * 179.76950 * 23 22 21 25 25 C 1.38295 * 120.07819 * 0.51359 * 24 23 22 26 26 C 1.38295 * 120.14993 * 359.74357 * 25 24 23 27 27 C 1.38096 * 120.07488 * 359.97438 * 26 25 24 28 28 C 1.38680 * 119.99447 * 359.68161 * 20 19 18 29 29 H 1.09001 * 109.46916 * 60.00638 * 1 2 3 30 30 H 1.09006 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47120 * 300.00183 * 1 2 3 32 32 H 1.08997 * 109.47629 * 239.99308 * 2 1 3 33 33 H 1.09003 * 109.47428 * 119.99377 * 2 1 3 34 34 H 0.97004 * 119.99919 * 179.97438 * 8 7 5 35 35 H 1.08002 * 120.00019 * 359.97374 * 17 16 14 36 36 H 1.07990 * 119.88607 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.88244 * 179.97438 * 19 18 17 38 38 H 0.97004 * 120.00003 * 25.14503 * 21 20 19 39 39 H 1.07997 * 120.03720 * 0.02819 * 23 22 21 40 40 H 1.07997 * 119.95909 * 180.25613 * 24 23 22 41 41 H 1.07997 * 119.92507 * 179.72194 * 25 24 23 42 42 H 1.08000 * 119.96175 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.03515 * 179.97438 * 27 26 25 44 44 H 1.08002 * 120.11640 * 180.29722 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8420 5 6 3.5419 1.4443 -0.1238 6 1 4.1470 1.8928 0.6501 7 6 4.1434 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8799 -1.3811 10 1 6.5988 1.5441 -0.1930 11 1 6.4962 -0.5191 -1.4624 12 1 6.4001 1.6155 -2.6091 13 8 1.6559 2.0917 1.2406 14 6 0.4685 2.7278 1.2558 15 8 -0.2272 2.7393 0.2601 16 6 0.0118 3.4104 2.4840 17 6 0.8096 3.3982 3.6304 18 6 0.3806 4.0359 4.7763 19 6 -0.8378 4.6890 4.7949 20 6 -1.6395 4.7072 3.6594 21 7 -2.8704 5.3684 3.6837 22 6 -3.8876 4.9832 2.8069 23 6 -4.7882 5.9265 2.3279 24 6 -5.7895 5.5431 1.4576 25 6 -5.9029 4.2201 1.0711 26 6 -5.0114 3.2777 1.5501 27 6 -4.0042 3.6552 2.4161 28 6 -1.2149 4.0745 2.5007 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.8293 -0.0605 -2.9502 35 1 1.7619 2.8888 3.6202 36 1 0.9988 4.0249 5.6617 37 1 -1.1682 5.1860 5.6950 38 1 -3.0186 6.0947 4.3093 39 1 -4.7027 6.9590 2.6326 40 1 -6.4874 6.2766 1.0817 41 1 -6.6897 3.9222 0.3939 42 1 -5.1025 2.2454 1.2459 43 1 -3.3085 2.9185 2.7901 44 1 -1.8340 4.0915 1.6160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787084361.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:42 Heat of formation + Delta-G solvation = -50.930118 kcal Electronic energy + Delta-G solvation = -26754.661210 eV Core-core repulsion = 23021.929811 eV Total energy + Delta-G solvation = -3732.731399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67095 -40.87779 -39.45805 -37.61723 -36.42990 -35.49488 -33.42422 -32.38588 -32.02933 -31.24342 -29.51645 -29.00554 -25.95812 -24.88299 -23.93016 -23.60642 -22.35169 -22.23789 -21.30132 -19.36169 -18.68988 -18.39275 -17.99935 -17.40989 -17.08400 -16.85166 -16.62473 -16.25150 -15.86404 -15.38221 -15.01989 -14.88505 -14.77513 -14.74152 -14.44134 -14.15042 -13.86831 -13.54527 -13.43148 -13.35615 -13.12423 -12.85302 -12.81536 -12.65759 -12.54275 -12.23957 -12.14257 -12.13030 -11.79390 -11.66638 -11.49215 -11.33010 -10.84003 -10.54987 -10.07395 -9.92555 -9.87339 -8.33337 -8.28255 -6.45317 -0.29724 0.15733 0.45824 0.71059 1.41249 1.42190 1.55847 1.65097 1.91545 2.27428 2.42716 2.75864 2.94597 3.01357 3.78081 3.87612 3.97143 4.03027 4.09774 4.23419 4.30896 4.32987 4.35878 4.37649 4.45322 4.51260 4.54692 4.65276 4.75144 4.82864 4.91062 5.03784 5.08607 5.14524 5.18376 5.32085 5.32984 5.40562 5.42401 5.50226 5.52158 5.64242 5.65072 5.70125 5.93585 5.94736 6.08594 6.31967 6.59402 6.72186 6.95094 7.25909 8.79009 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.003078 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.430923 B = 9095.946643 C =10186.771214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.225 3.775 4 H 0.004 0.996 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.263 1.263 11 H -0.270 1.270 12 H -0.277 1.277 13 O -0.354 6.354 14 C 0.488 3.512 15 O -0.543 6.543 16 C -0.107 4.107 17 C -0.107 4.107 18 C -0.084 4.084 19 C -0.123 4.123 20 C 0.172 3.828 21 N -0.675 5.675 22 C 0.164 3.836 23 C -0.166 4.166 24 C -0.092 4.092 25 C -0.158 4.158 26 C -0.104 4.104 27 C -0.180 4.180 28 C -0.123 4.123 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.271 0.729 35 H 0.134 0.866 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.426 0.574 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.140 0.860 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.220 10.780 15.787 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.022 0.978 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.187 1.187 11 H -0.195 1.195 12 H -0.202 1.202 13 O -0.271 6.271 14 C 0.335 3.665 15 O -0.436 6.436 16 C -0.108 4.108 17 C -0.127 4.127 18 C -0.102 4.102 19 C -0.144 4.144 20 C 0.074 3.926 21 N -0.301 5.301 22 C 0.067 3.933 23 C -0.187 4.187 24 C -0.110 4.110 25 C -0.177 4.177 26 C -0.122 4.122 27 C -0.201 4.201 28 C -0.144 4.144 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.189 0.811 37 H 0.189 0.811 38 H 0.266 0.734 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.158 0.842 42 H 0.144 0.856 43 H 0.125 0.875 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.377 10.601 15.246 24.110 hybrid contribution 0.777 -0.230 -0.857 1.179 sum -14.601 10.371 14.389 22.973 Atomic orbital electron populations 1.21702 0.96515 1.00557 0.99851 1.21863 0.94253 0.98034 1.02480 1.20420 0.94734 0.89266 0.78390 0.97825 1.21339 0.90250 1.39861 1.07118 0.91501 1.25833 1.04392 0.93843 0.94267 1.70029 1.37429 1.37969 1.09842 0.85133 0.77496 0.78375 0.78393 1.18674 1.19548 1.20207 1.86507 1.35053 1.62916 1.42583 1.21841 0.79856 0.76184 0.88629 1.90742 1.56085 1.59842 1.36918 1.19040 0.96960 1.02586 0.92258 1.21552 0.99663 0.99331 0.92130 1.21320 0.95947 0.94985 0.97919 1.21408 0.94869 1.01316 0.96805 1.17566 0.86996 0.95279 0.92786 1.41888 1.08817 1.38817 1.40539 1.17870 0.89958 0.92636 0.92884 1.21141 0.97787 0.99201 1.00549 1.21331 0.97463 0.96415 0.95782 1.21375 1.00556 0.93675 1.02128 1.21211 0.94301 1.00589 0.96136 1.21077 1.00926 0.94973 1.03136 1.20866 0.95166 1.00423 0.97992 0.94689 0.91813 0.94919 0.89335 0.93384 0.92010 0.84846 0.81064 0.81116 0.73437 0.83482 0.83044 0.84189 0.85582 0.87524 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.56 71.98 0.62 -5.39 16 2 C -0.13 -6.72 5.49 30.59 0.17 -6.55 16 3 C 0.23 12.78 2.25 29.85 0.07 12.84 16 4 H 0.00 0.25 7.16 -2.38 -0.02 0.24 16 5 C -0.55 -31.84 8.90 25.60 0.23 -31.61 16 6 H 0.07 3.81 7.81 -2.91 -0.02 3.78 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.91 -53.28 11.29 21.45 0.24 -53.04 16 9 Si 0.98 43.47 29.54 68.60 2.03 45.50 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 O -0.35 -18.06 9.05 -56.19 -0.51 -18.57 16 14 C 0.49 22.86 6.35 70.34 0.45 23.30 16 15 O -0.54 -28.25 13.53 19.93 0.27 -27.98 16 16 C -0.11 -3.87 5.87 -20.11 -0.12 -3.99 16 17 C -0.11 -3.10 9.61 22.55 0.22 -2.88 16 18 C -0.08 -1.60 10.02 22.21 0.22 -1.38 16 19 C -0.12 -2.09 9.93 22.46 0.22 -1.87 16 20 C 0.17 3.96 6.05 38.17 0.23 4.19 16 21 N -0.68 -12.43 5.46 -180.61 -0.99 -13.42 16 22 C 0.16 3.60 5.90 38.22 0.23 3.83 16 23 C -0.17 -2.96 9.96 22.40 0.22 -2.73 16 24 C -0.09 -1.55 10.04 22.25 0.22 -1.33 16 25 C -0.16 -3.09 10.04 22.30 0.22 -2.86 16 26 C -0.10 -2.47 10.04 22.25 0.22 -2.24 16 27 C -0.18 -4.68 7.75 22.40 0.17 -4.50 16 28 C -0.12 -3.94 7.43 22.68 0.17 -3.77 16 29 H 0.03 1.72 7.79 -2.39 -0.02 1.70 16 30 H 0.06 2.53 8.14 -2.38 -0.02 2.52 16 31 H 0.03 1.48 6.06 -2.39 -0.01 1.47 16 32 H 0.09 5.01 5.95 -2.39 -0.01 4.99 16 33 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.13 4.00 7.61 -2.91 -0.02 3.98 16 36 H 0.17 1.97 8.06 -2.92 -0.02 1.95 16 37 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.43 4.79 8.89 -92.71 -0.82 3.97 16 39 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 40 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 43 H 0.11 3.09 6.62 -2.91 -0.02 3.07 16 44 H 0.12 4.22 5.93 -2.91 -0.02 4.20 16 Total: -1.00 -73.23 366.44 5.45 -67.78 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.20 Total: 25.33 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 4.21 Total: -25.60 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -0.74 Total: -66.46 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -0.24 Total: -46.55 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -73.23 5.45 -67.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084361.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.849 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds