Wall clock time and date at job start Tue Mar 31 2020 16:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47119 * 2 1 4 4 N 1.46493 * 109.47456 * 240.00039 * 2 1 3 5 5 C 1.39673 * 120.00259 * 84.99648 * 4 2 1 6 6 C 1.39079 * 120.08464 * 0.02562 * 5 4 2 7 7 C 1.38113 * 119.68097 * 179.97438 * 6 5 4 8 8 C 1.38025 * 120.43058 * 359.82324 * 7 6 5 9 9 C 1.39317 * 120.39714 * 0.02562 * 8 7 6 10 10 C 1.38360 * 120.08650 * 179.97438 * 5 4 2 11 11 C 1.51633 * 132.18718 * 0.95131 * 10 5 4 12 12 C 1.54708 * 101.91875 * 164.14520 * 11 10 5 13 13 O 1.36149 * 129.84523 * 180.56717 * 9 8 7 14 14 C 1.50695 * 109.47122 * 119.99643 * 2 1 3 15 15 C 1.38301 * 119.93114 * 79.72830 * 14 2 1 16 16 C 1.38105 * 120.07097 * 179.72503 * 15 14 2 17 17 C 1.38881 * 119.92885 * 0.54598 * 16 15 14 18 18 O 1.35745 * 120.06936 * 179.74509 * 17 16 15 19 19 C 1.34835 * 116.99887 * 174.44172 * 18 17 16 20 20 H 1.07998 * 119.99986 * 5.06208 * 19 18 17 21 21 C 1.38652 * 119.99845 * 185.05349 * 19 18 17 22 22 N 1.31555 * 120.00117 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99971 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47080 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47017 * 120.00562 * 23 21 19 26 26 H 1.48497 * 109.47190 * 240.00547 * 23 21 19 27 27 C 1.38880 * 119.85976 * 359.73060 * 17 16 15 28 28 C 1.38098 * 119.93573 * 359.97438 * 27 17 16 29 29 H 1.09004 * 109.47180 * 60.00510 * 1 2 3 30 30 H 1.09001 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47623 * 300.00447 * 1 2 3 32 32 H 0.97000 * 119.99843 * 265.00241 * 4 2 1 33 33 H 1.07998 * 120.15830 * 359.95712 * 6 5 4 34 34 H 1.07997 * 119.78513 * 179.55470 * 7 6 5 35 35 H 1.08005 * 119.79838 * 180.02562 * 8 7 6 36 36 H 1.09002 * 110.93539 * 282.29930 * 11 10 5 37 37 H 1.08995 * 110.94501 * 45.98838 * 11 10 5 38 38 H 1.08998 * 110.75196 * 266.93731 * 12 11 10 39 39 H 1.09000 * 110.91170 * 143.65462 * 12 11 10 40 40 H 1.08001 * 119.96322 * 0.02562 * 15 14 2 41 41 H 1.07993 * 120.03436 * 180.27842 * 16 15 14 42 42 H 0.96998 * 120.00231 * 179.97438 * 22 21 19 43 43 H 1.08006 * 120.03543 * 179.97438 * 27 17 16 44 44 H 1.08001 * 119.96701 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1517 0.0062 -2.3993 6 6 1.8219 1.3557 -2.4637 7 6 1.9575 2.0367 -3.6576 8 6 2.4210 1.3874 -4.7839 9 6 2.7575 0.0366 -4.7306 10 6 2.6133 -0.6442 -3.5299 11 6 3.0287 -2.0809 -3.7800 12 6 3.0215 -2.1512 -5.3255 13 8 3.2368 -0.7822 -5.7071 14 6 2.0323 -0.7103 1.2305 15 6 2.0608 -2.0926 1.2660 16 6 2.5259 -2.7464 2.3900 17 6 2.9546 -2.0146 3.4897 18 8 3.4075 -2.6544 4.5980 19 6 3.9153 -1.8869 5.5834 20 1 3.8737 -0.8105 5.5053 21 6 4.4907 -2.4795 6.6970 22 7 4.5417 -3.7906 6.7919 23 14 5.1936 -1.4162 8.0625 24 1 5.0125 0.0167 7.7171 25 1 4.4859 -1.7117 9.3341 26 1 6.6408 -1.7082 8.2221 27 6 2.9193 -0.6267 3.4531 28 6 2.4589 0.0214 2.3239 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2490 -1.6317 -1.1525 33 1 1.4612 1.8687 -1.5844 34 1 1.6950 3.0829 -3.7113 35 1 2.5235 1.9300 -5.7122 36 1 4.0269 -2.2720 -3.3860 37 1 2.3042 -2.7756 -3.3551 38 1 2.0582 -2.5064 -5.6914 39 1 3.8292 -2.7859 -5.6898 40 1 1.7235 -2.6612 0.4120 41 1 2.5521 -3.8257 2.4154 42 1 4.9446 -4.2052 7.5708 43 1 3.2517 -0.0547 4.3069 44 1 2.4316 1.1006 2.2947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794836489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:25 Heat of formation + Delta-G solvation = -5.700306 kcal Electronic energy + Delta-G solvation = -26185.870295 eV Core-core repulsion = 22455.100208 eV Total energy + Delta-G solvation = -3730.770087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.14825 -39.42198 -38.31928 -36.97959 -35.16903 -32.87574 -32.29860 -30.93147 -30.32051 -29.57105 -28.07869 -27.79042 -25.49564 -23.64675 -23.23805 -22.22860 -21.97572 -21.12535 -20.03282 -18.16426 -17.72162 -17.34175 -16.82328 -16.34296 -15.92552 -15.47875 -15.05254 -14.62575 -14.53908 -14.01006 -13.96337 -13.68218 -13.58247 -13.41961 -13.27831 -12.98486 -12.86040 -12.73516 -12.57721 -12.24267 -11.87245 -11.83805 -11.75898 -11.38335 -11.30914 -11.16226 -11.07098 -10.83578 -10.77533 -10.51628 -10.48638 -9.95594 -9.43031 -8.91281 -8.31795 -8.26237 -7.40411 -7.30110 -6.53216 -4.12241 1.32479 1.58966 2.08415 2.14439 3.07032 3.09041 3.14566 3.18324 3.46425 3.76701 3.89894 4.37819 4.43666 4.50653 4.81074 4.89896 5.00381 5.02491 5.04934 5.16799 5.21229 5.26784 5.36259 5.43030 5.45711 5.56707 5.58094 5.63400 5.64684 5.75531 5.85181 5.91977 6.08536 6.16353 6.21000 6.29158 6.33376 6.45203 6.53907 6.55318 6.76151 6.94165 7.01732 7.13046 7.21718 7.33249 7.41686 7.68201 7.75132 7.91437 8.92380 9.60761 10.64575 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021515 B = 0.002360 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.123073 B =11859.803912 C =12334.026592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.204 3.796 3 H 0.079 0.921 4 N -0.731 5.731 5 C 0.276 3.724 6 C -0.228 4.228 7 C -0.039 4.039 8 C -0.204 4.204 9 C 0.149 3.851 10 C -0.262 4.262 11 C -0.099 4.099 12 C 0.054 3.946 13 O -0.308 6.308 14 C -0.194 4.194 15 C -0.067 4.067 16 C -0.190 4.190 17 C 0.156 3.844 18 O -0.175 6.175 19 C -0.393 4.393 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.231 4.231 28 C -0.059 4.059 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.399 0.601 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.270 0.730 43 H 0.129 0.871 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.756 7.233 -19.164 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.100 3.900 3 H 0.097 0.903 4 N -0.358 5.358 5 C 0.169 3.831 6 C -0.250 4.250 7 C -0.057 4.057 8 C -0.225 4.225 9 C 0.103 3.897 10 C -0.268 4.268 11 C -0.136 4.136 12 C -0.021 4.021 13 O -0.222 6.222 14 C -0.196 4.196 15 C -0.085 4.085 16 C -0.209 4.209 17 C 0.102 3.898 18 O -0.078 6.078 19 C -0.469 4.469 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.250 4.250 28 C -0.077 4.077 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.235 0.765 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.135 0.865 42 H 0.080 0.920 43 H 0.146 0.854 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.623 6.955 -18.949 20.953 hybrid contribution 0.438 -0.018 0.914 1.014 sum -5.185 6.938 -18.035 20.007 Atomic orbital electron populations 1.22265 0.95581 1.02429 1.01638 1.19559 0.92956 0.95570 0.81950 0.90329 1.45100 1.71528 1.12502 1.06710 1.17034 0.90606 0.90893 0.84525 1.20613 1.12344 0.92757 0.99305 1.20564 0.94965 0.98991 0.91223 1.19933 1.10786 0.91711 1.00058 1.19275 0.92137 0.91914 0.86343 1.20031 1.15810 0.96931 0.94024 1.21567 1.02570 0.93830 0.95632 1.23767 1.02473 0.81651 0.94184 1.86796 1.75999 1.16672 1.42762 1.19208 1.10709 0.93638 0.96022 1.20292 0.98408 0.93307 0.96522 1.20175 1.08502 0.99432 0.92839 1.19396 0.91943 0.90934 0.87551 1.83979 1.66901 1.35175 1.21774 1.21391 1.37999 0.90754 0.96750 0.88924 1.25311 0.96631 0.96352 0.98197 1.70042 1.41334 1.08775 1.29354 0.85634 0.78740 0.79260 0.79739 1.19043 1.20074 1.20065 1.21153 1.09356 0.94417 1.00069 1.20539 0.96393 0.98300 0.92505 0.92669 0.92384 0.91655 0.76521 0.85471 0.85498 0.86213 0.89787 0.89871 0.90777 0.87880 0.87533 0.86469 0.91957 0.85373 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.41 37.15 0.35 -1.47 16 2 C 0.20 2.57 2.47 -69.09 -0.17 2.40 16 3 H 0.08 0.96 6.35 -51.93 -0.33 0.63 16 4 N -0.73 -8.92 5.20 -53.40 -0.28 -9.20 16 5 C 0.28 3.42 6.62 -83.93 -0.56 2.86 16 6 C -0.23 -2.60 8.87 -39.32 -0.35 -2.95 16 7 C -0.04 -0.40 10.01 -39.71 -0.40 -0.80 16 8 C -0.20 -2.33 10.06 -39.26 -0.39 -2.72 16 9 C 0.15 1.88 7.03 -38.98 -0.27 1.60 16 10 C -0.26 -3.20 6.19 -103.92 -0.64 -3.84 16 11 C -0.10 -0.96 6.75 -26.52 -0.18 -1.14 16 12 C 0.05 0.47 8.01 38.06 0.30 0.78 16 13 O -0.31 -3.74 11.10 -20.21 -0.22 -3.96 16 14 C -0.19 -3.04 4.96 -104.58 -0.52 -3.56 16 15 C -0.07 -1.10 9.04 -39.61 -0.36 -1.45 16 16 C -0.19 -3.81 9.99 -39.39 -0.39 -4.21 16 17 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 18 O -0.18 -4.87 9.76 0.05 0.00 -4.87 16 19 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 20 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -24.78 13.67 55.48 0.76 -24.03 16 23 Si 0.94 20.10 29.55 -169.99 -5.02 15.07 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 C -0.23 -4.78 9.17 -39.39 -0.36 -5.14 16 28 C -0.06 -1.01 9.66 -39.61 -0.38 -1.39 16 29 H 0.05 0.58 7.72 -51.93 -0.40 0.17 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.40 4.75 6.57 -40.82 -0.27 4.48 16 33 H 0.13 1.32 6.15 -52.49 -0.32 0.99 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.11 1.45 6.93 -52.49 -0.36 1.09 16 41 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 42 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.13 2.68 5.64 -52.48 -0.30 2.38 16 44 H 0.11 1.56 8.03 -52.49 -0.42 1.14 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -30.61 364.38 -9.28 -39.89 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.62 Total: 8.72 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -4.39 Total: -27.11 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.48 Total: -33.23 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.22 Total: -8.83 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.61 -9.28 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794836489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.188 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds