Wall clock time and date at job start Tue Mar 31 2020 16:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47119 * 2 1 4 4 N 1.46493 * 109.47456 * 240.00039 * 2 1 3 5 5 C 1.39673 * 120.00259 * 84.99648 * 4 2 1 6 6 C 1.39079 * 120.08464 * 0.02562 * 5 4 2 7 7 C 1.38113 * 119.68097 * 179.97438 * 6 5 4 8 8 C 1.38025 * 120.43058 * 359.82324 * 7 6 5 9 9 C 1.39317 * 120.39714 * 0.02562 * 8 7 6 10 10 C 1.38360 * 120.08650 * 179.97438 * 5 4 2 11 11 C 1.51633 * 132.18718 * 0.95131 * 10 5 4 12 12 C 1.54708 * 101.91875 * 164.14520 * 11 10 5 13 13 O 1.36149 * 129.84523 * 180.56717 * 9 8 7 14 14 C 1.50695 * 109.47122 * 119.99643 * 2 1 3 15 15 C 1.38301 * 119.93114 * 79.72830 * 14 2 1 16 16 C 1.38105 * 120.07097 * 179.72503 * 15 14 2 17 17 C 1.38881 * 119.92885 * 0.54598 * 16 15 14 18 18 O 1.35745 * 120.06936 * 179.74509 * 17 16 15 19 19 C 1.34835 * 116.99887 * 174.44172 * 18 17 16 20 20 H 1.07998 * 119.99986 * 5.06208 * 19 18 17 21 21 C 1.38652 * 119.99845 * 185.05349 * 19 18 17 22 22 N 1.31555 * 120.00117 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99971 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47080 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47017 * 120.00562 * 23 21 19 26 26 H 1.48497 * 109.47190 * 240.00547 * 23 21 19 27 27 C 1.38880 * 119.85976 * 359.73060 * 17 16 15 28 28 C 1.38098 * 119.93573 * 359.97438 * 27 17 16 29 29 H 1.09004 * 109.47180 * 60.00510 * 1 2 3 30 30 H 1.09001 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47623 * 300.00447 * 1 2 3 32 32 H 0.97000 * 119.99843 * 265.00241 * 4 2 1 33 33 H 1.07998 * 120.15830 * 359.95712 * 6 5 4 34 34 H 1.07997 * 119.78513 * 179.55470 * 7 6 5 35 35 H 1.08005 * 119.79838 * 180.02562 * 8 7 6 36 36 H 1.09002 * 110.93539 * 282.29930 * 11 10 5 37 37 H 1.08995 * 110.94501 * 45.98838 * 11 10 5 38 38 H 1.08998 * 110.75196 * 266.93731 * 12 11 10 39 39 H 1.09000 * 110.91170 * 143.65462 * 12 11 10 40 40 H 1.08001 * 119.96322 * 0.02562 * 15 14 2 41 41 H 1.07993 * 120.03436 * 180.27842 * 16 15 14 42 42 H 0.96998 * 120.00231 * 179.97438 * 22 21 19 43 43 H 1.08006 * 120.03543 * 179.97438 * 27 17 16 44 44 H 1.08001 * 119.96701 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1517 0.0062 -2.3993 6 6 1.8219 1.3557 -2.4637 7 6 1.9575 2.0367 -3.6576 8 6 2.4210 1.3874 -4.7839 9 6 2.7575 0.0366 -4.7306 10 6 2.6133 -0.6442 -3.5299 11 6 3.0287 -2.0809 -3.7800 12 6 3.0215 -2.1512 -5.3255 13 8 3.2368 -0.7822 -5.7071 14 6 2.0323 -0.7103 1.2305 15 6 2.0608 -2.0926 1.2660 16 6 2.5259 -2.7464 2.3900 17 6 2.9546 -2.0146 3.4897 18 8 3.4075 -2.6544 4.5980 19 6 3.9153 -1.8869 5.5834 20 1 3.8737 -0.8105 5.5053 21 6 4.4907 -2.4795 6.6970 22 7 4.5417 -3.7906 6.7919 23 14 5.1936 -1.4162 8.0625 24 1 5.0125 0.0167 7.7171 25 1 4.4859 -1.7117 9.3341 26 1 6.6408 -1.7082 8.2221 27 6 2.9193 -0.6267 3.4531 28 6 2.4589 0.0214 2.3239 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2490 -1.6317 -1.1525 33 1 1.4612 1.8687 -1.5844 34 1 1.6950 3.0829 -3.7113 35 1 2.5235 1.9300 -5.7122 36 1 4.0269 -2.2720 -3.3860 37 1 2.3042 -2.7756 -3.3551 38 1 2.0582 -2.5064 -5.6914 39 1 3.8292 -2.7859 -5.6898 40 1 1.7235 -2.6612 0.4120 41 1 2.5521 -3.8257 2.4154 42 1 4.9446 -4.2052 7.5708 43 1 3.2517 -0.0547 4.3069 44 1 2.4316 1.1006 2.2947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794836489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:24 Heat of formation + Delta-G solvation = -22.899711 kcal Electronic energy + Delta-G solvation = -26186.616117 eV Core-core repulsion = 22455.100208 eV Total energy + Delta-G solvation = -3731.515910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.96936 -40.93811 -39.50877 -38.29351 -36.31199 -34.33790 -33.64187 -32.05064 -31.74754 -30.37439 -29.43943 -28.66859 -27.38373 -24.58382 -24.21020 -23.67323 -23.06049 -22.10501 -21.29114 -19.82737 -18.96243 -18.63927 -17.90060 -17.11959 -16.91210 -16.59720 -16.32245 -16.14485 -15.82919 -15.55183 -15.38862 -15.00541 -14.78033 -14.40261 -14.29158 -14.11605 -14.00440 -13.85503 -13.62769 -13.53560 -13.23907 -12.99056 -12.83172 -12.57648 -12.46686 -12.43388 -12.15379 -12.10524 -11.97507 -11.83285 -11.71292 -11.20397 -10.88386 -10.77523 -9.82602 -9.10077 -8.96169 -8.49111 -8.30192 -6.17202 0.48601 0.55083 0.61220 0.72629 1.34727 1.42434 1.52732 2.16177 2.42259 2.47599 2.81702 2.92438 3.14218 3.47252 3.63667 3.76566 3.80767 4.01003 4.12874 4.15803 4.21466 4.30111 4.37386 4.46002 4.52539 4.53692 4.57765 4.65811 4.70587 4.83746 4.90360 4.90975 4.93871 5.02267 5.05828 5.15046 5.24407 5.33372 5.35247 5.47354 5.51919 5.64403 5.67712 5.68960 5.74883 6.00912 6.14894 6.23565 6.47832 6.81000 6.95983 7.76141 8.74249 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021515 B = 0.002360 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.123073 B =11859.803912 C =12334.026592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.210 3.790 3 H 0.093 0.907 4 N -0.733 5.733 5 C 0.261 3.739 6 C -0.234 4.234 7 C -0.037 4.037 8 C -0.214 4.214 9 C 0.128 3.872 10 C -0.275 4.275 11 C -0.099 4.099 12 C 0.051 3.949 13 O -0.327 6.327 14 C -0.166 4.166 15 C -0.058 4.058 16 C -0.201 4.201 17 C 0.115 3.885 18 O -0.232 6.232 19 C -0.412 4.412 20 H 0.103 0.897 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.250 1.250 25 H -0.268 1.268 26 H -0.269 1.269 27 C -0.239 4.239 28 C -0.057 4.057 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.399 0.601 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.142 0.858 41 H 0.113 0.887 42 H 0.273 0.727 43 H 0.120 0.880 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.720 9.749 -21.256 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.105 3.895 3 H 0.110 0.890 4 N -0.361 5.361 5 C 0.156 3.844 6 C -0.257 4.257 7 C -0.055 4.055 8 C -0.235 4.235 9 C 0.082 3.918 10 C -0.281 4.281 11 C -0.136 4.136 12 C -0.023 4.023 13 O -0.241 6.241 14 C -0.167 4.167 15 C -0.076 4.076 16 C -0.221 4.221 17 C 0.064 3.936 18 O -0.138 6.138 19 C -0.488 4.488 20 H 0.120 0.880 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.174 1.174 25 H -0.193 1.193 26 H -0.195 1.195 27 C -0.258 4.258 28 C -0.076 4.076 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.235 0.765 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.149 0.851 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.142 0.858 40 H 0.159 0.841 41 H 0.131 0.869 42 H 0.082 0.918 43 H 0.138 0.862 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.615 9.502 -21.109 24.076 hybrid contribution 0.585 -0.690 1.132 1.449 sum -6.030 8.812 -19.977 22.652 Atomic orbital electron populations 1.22220 0.94138 1.02500 1.02610 1.19555 0.93864 0.95638 0.80437 0.88962 1.44967 1.72135 1.12484 1.06553 1.17190 0.91339 0.91435 0.84466 1.20871 1.12117 0.92521 1.00153 1.20902 0.93899 1.00280 0.90450 1.20268 1.10512 0.91626 1.01051 1.19594 0.92839 0.92619 0.86744 1.20319 1.15661 0.98107 0.93983 1.21628 1.02679 0.92942 0.96397 1.24007 1.04106 0.80563 0.93639 1.86765 1.76217 1.18021 1.43140 1.19691 1.06897 0.93423 0.96670 1.20650 0.96760 0.94092 0.96083 1.20421 1.08789 0.99575 0.93289 1.19957 0.93421 0.92510 0.87673 1.83944 1.69806 1.36581 1.23511 1.21861 1.38269 0.91410 0.97290 0.87983 1.26582 0.96892 0.97798 1.00778 1.70184 1.43993 1.10992 1.30718 0.84536 0.77853 0.77884 0.76001 1.17354 1.19346 1.19457 1.21256 1.09838 0.93480 1.01270 1.20920 0.95041 1.00244 0.91354 0.91285 0.92819 0.91160 0.76486 0.84199 0.82678 0.85148 0.90043 0.88658 0.89512 0.85795 0.84076 0.86910 0.91834 0.86225 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.41 71.98 0.68 -2.22 16 2 C 0.21 4.43 2.47 44.24 0.11 4.54 16 3 H 0.09 1.79 6.35 -2.39 -0.02 1.78 16 4 N -0.73 -15.43 5.20 -322.86 -1.68 -17.11 16 5 C 0.26 5.71 6.62 38.12 0.25 5.96 16 6 C -0.23 -4.55 8.87 22.44 0.20 -4.35 16 7 C -0.04 -0.65 10.01 22.19 0.22 -0.43 16 8 C -0.21 -4.41 10.06 22.48 0.23 -4.18 16 9 C 0.13 3.00 7.03 22.66 0.16 3.16 16 10 C -0.27 -6.14 6.19 -19.41 -0.12 -6.26 16 11 C -0.10 -1.73 6.75 30.73 0.21 -1.53 16 12 C 0.05 0.79 8.01 72.56 0.58 1.37 16 13 O -0.33 -7.46 11.10 -95.24 -1.06 -8.52 16 14 C -0.17 -4.67 4.96 -19.83 -0.10 -4.77 16 15 C -0.06 -1.78 9.04 22.25 0.20 -1.58 16 16 C -0.20 -8.18 9.99 22.39 0.22 -7.96 16 17 C 0.11 5.54 6.65 22.58 0.15 5.69 16 18 O -0.23 -13.73 9.76 -22.73 -0.22 -13.95 16 19 C -0.41 -23.64 9.49 67.92 0.64 -22.99 16 20 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 21 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 22 N -0.92 -56.07 13.67 21.61 0.30 -55.78 16 23 Si 1.02 42.31 29.55 68.60 2.03 44.34 16 24 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 27 C -0.24 -9.94 9.17 22.39 0.21 -9.73 16 28 C -0.06 -1.82 9.66 22.25 0.21 -1.60 16 29 H 0.07 1.14 7.72 -2.39 -0.02 1.12 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.40 8.24 6.57 -92.71 -0.61 7.63 16 33 H 0.14 2.28 6.15 -2.91 -0.02 2.26 16 34 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.14 3.39 6.93 -2.91 -0.02 3.36 16 41 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.12 5.09 5.64 -2.91 -0.02 5.08 16 44 H 0.14 3.56 8.03 -2.91 -0.02 3.54 16 Total: -1.00 -71.47 364.38 4.31 -67.15 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.43 Total: 31.57 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 4.52 Total: -47.71 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -1.38 Total: -72.89 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -1.28 Total: -22.47 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -71.47 4.31 -67.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794836489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.255 kcal (2) G-P(sol) polarization free energy of solvation -71.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds