Wall clock time and date at job start Tue Mar 31 2020 16:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47453 * 2 1 4 4 O 1.45202 * 109.46953 * 119.99523 * 2 1 3 5 5 C 1.34228 * 116.99962 * 270.00029 * 4 2 1 6 6 O 1.20821 * 120.00259 * 359.97438 * 5 4 2 7 7 C 1.50707 * 120.00007 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47316 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.46632 * 54.99977 * 8 7 5 10 10 C 1.50703 * 109.47239 * 295.00774 * 8 7 5 11 11 H 1.07996 * 120.00137 * 121.36447 * 10 8 7 12 12 C 1.37881 * 119.99628 * 301.35871 * 10 8 7 13 13 N 1.31520 * 120.00080 * 6.18794 * 12 10 8 14 14 Si 1.86800 * 120.00038 * 186.18357 * 12 10 8 15 15 H 1.48497 * 109.46882 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46663 * 120.00205 * 14 12 10 17 17 H 1.48497 * 109.47314 * 240.00355 * 14 12 10 18 18 C 1.50699 * 109.47056 * 175.00380 * 8 7 5 19 19 C 1.38239 * 119.99498 * 211.37458 * 18 8 7 20 20 C 1.38241 * 119.99416 * 179.78711 * 19 18 8 21 21 C 1.38233 * 119.99726 * 0.44179 * 20 19 18 22 22 C 1.38233 * 120.00578 * 359.81008 * 21 20 19 23 23 C 1.38228 * 119.99940 * 31.64538 * 18 8 7 24 24 C 1.50697 * 109.47551 * 239.99367 * 2 1 3 25 25 C 1.38648 * 120.79365 * 279.72743 * 24 2 1 26 26 C 1.38203 * 119.16552 * 179.75278 * 25 24 2 27 27 N 1.31870 * 120.76335 * 0.52683 * 26 25 24 28 28 C 1.31873 * 121.72498 * 359.74495 * 27 26 25 29 29 C 1.38208 * 120.76519 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.46753 * 60.00444 * 1 2 3 31 31 H 1.08997 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47086 * 300.00581 * 1 2 3 33 33 H 1.09001 * 109.46407 * 60.00341 * 7 5 4 34 34 H 1.08994 * 109.46865 * 300.00706 * 7 5 4 35 35 H 0.96994 * 119.99782 * 179.97438 * 13 12 10 36 36 H 1.08002 * 120.00061 * 359.97438 * 19 18 8 37 37 H 1.07995 * 119.99534 * 180.27665 * 20 19 18 38 38 H 1.08002 * 119.99419 * 179.83426 * 21 20 19 39 39 H 1.07997 * 120.00001 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00406 * 359.97438 * 23 18 8 41 41 H 1.08004 * 120.41556 * 359.97438 * 25 24 2 42 42 H 1.07999 * 119.61603 * 180.24370 * 26 25 24 43 43 H 1.07995 * 119.61733 * 180.02562 * 28 27 26 44 44 H 1.07996 * 120.42298 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2171 0.0642 2.2811 6 8 1.9982 1.2520 2.2503 7 6 2.7182 -0.5770 3.5496 8 6 2.8635 0.4894 4.6372 9 1 1.9161 1.0141 4.7602 10 6 3.9337 1.4721 4.2373 11 1 3.6948 2.5208 4.1399 12 6 5.2180 1.0323 3.9959 13 7 5.4827 -0.2560 3.9951 14 14 6.5821 2.2663 3.6700 15 1 6.0280 3.6429 3.7263 16 1 7.6411 2.1169 4.7003 17 1 7.1615 2.0200 2.3251 18 6 3.2461 -0.1686 5.9378 19 6 2.8300 0.3780 7.1375 20 6 3.1773 -0.2280 8.3304 21 6 3.9483 -1.3753 8.3240 22 6 4.3688 -1.9189 7.1246 23 6 4.0179 -1.3153 5.9315 24 6 2.0324 -0.7105 -1.2303 25 6 2.0794 -2.0953 -1.2809 26 6 2.5414 -2.7121 -2.4281 27 7 2.9440 -1.9992 -3.4618 28 6 2.9186 -0.6808 -3.4471 29 6 2.4640 0.0052 -2.3367 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.6871 -1.0406 3.3641 34 1 2.0087 -1.3366 3.8775 35 1 6.3861 -0.5653 3.8249 36 1 2.2310 1.2767 7.1425 37 1 2.8484 0.1964 9.2674 38 1 4.2219 -1.8472 9.2561 39 1 4.9716 -2.8150 7.1197 40 1 4.3463 -1.7401 4.9944 41 1 1.7556 -2.6846 -0.4357 42 1 2.5773 -3.7904 -2.4768 43 1 3.2562 -0.1307 -4.3130 44 1 2.4453 1.0850 -2.3307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795980804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:16 Heat of formation + Delta-G solvation = -38.936981 kcal Electronic energy + Delta-G solvation = -27068.601452 eV Core-core repulsion = 23336.390114 eV Total energy + Delta-G solvation = -3732.211338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.67689 -40.87736 -39.86186 -37.78461 -36.07843 -34.79383 -33.04094 -32.17093 -31.45465 -31.19050 -30.17328 -28.01735 -25.77481 -24.71719 -24.38262 -23.19968 -22.61039 -21.68577 -20.93979 -18.72526 -18.49602 -17.97366 -17.40370 -17.13585 -16.88653 -16.65611 -16.59129 -16.15696 -15.50935 -15.41877 -15.04471 -14.89634 -14.63280 -14.50013 -14.21536 -14.00506 -13.78892 -13.58976 -13.26136 -13.23757 -13.00807 -12.85203 -12.73494 -12.70891 -12.35191 -12.13328 -11.95388 -11.79569 -11.74479 -11.26243 -11.12207 -10.94132 -10.66905 -10.49190 -10.46412 -10.11049 -9.41581 -9.14301 -8.02391 -6.17993 0.12082 0.18347 0.86018 0.97213 1.33440 1.38433 1.46684 1.55340 1.88286 2.40892 2.82963 3.14178 3.34261 3.37255 3.58391 3.80190 3.89355 4.12671 4.16879 4.18412 4.25122 4.31216 4.40442 4.48321 4.62563 4.63254 4.65932 4.69866 4.79729 4.83235 4.87758 4.94731 5.03998 5.07353 5.11958 5.20543 5.35775 5.49920 5.54146 5.64197 5.68439 5.72101 5.87956 5.92579 6.08738 6.29689 6.38037 6.55390 6.79208 6.97162 7.10642 7.46532 8.87602 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.003541 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.753174 B = 7904.725585 C = 8535.376748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.117 3.883 3 H 0.077 0.923 4 O -0.359 6.359 5 C 0.474 3.526 6 O -0.526 6.526 7 C -0.107 4.107 8 C 0.087 3.913 9 H 0.025 0.975 10 C -0.498 4.498 11 H 0.036 0.964 12 C 0.034 3.966 13 N -0.885 5.885 14 Si 0.930 3.070 15 H -0.281 1.281 16 H -0.279 1.279 17 H -0.283 1.283 18 C -0.055 4.055 19 C -0.147 4.147 20 C -0.139 4.139 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.091 4.091 24 C -0.054 4.054 25 C -0.152 4.152 26 C 0.093 3.907 27 N -0.506 5.506 28 C 0.094 3.906 29 C -0.167 4.167 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.264 0.736 36 H 0.108 0.892 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.182 0.818 43 H 0.184 0.816 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -5.792 -6.477 11.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.062 3.938 3 H 0.095 0.905 4 O -0.277 6.277 5 C 0.319 3.681 6 O -0.414 6.414 7 C -0.145 4.145 8 C 0.068 3.932 9 H 0.043 0.957 10 C -0.536 4.536 11 H 0.054 0.946 12 C -0.166 4.166 13 N -0.524 5.524 14 Si 0.758 3.242 15 H -0.206 1.206 16 H -0.205 1.205 17 H -0.210 1.210 18 C -0.056 4.056 19 C -0.165 4.165 20 C -0.157 4.157 21 C -0.165 4.165 22 C -0.166 4.166 23 C -0.109 4.109 24 C -0.062 4.062 25 C -0.172 4.172 26 C -0.063 4.063 27 N -0.215 5.215 28 C -0.063 4.063 29 C -0.187 4.187 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.151 0.849 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.154 0.846 41 H 0.164 0.836 42 H 0.199 0.801 43 H 0.201 0.799 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.559 -5.960 -7.298 11.480 hybrid contribution 0.678 1.676 0.591 1.902 sum -5.881 -4.284 -6.707 9.895 Atomic orbital electron populations 1.22106 0.91372 1.03975 1.03578 1.21475 0.95994 0.95733 0.80614 0.90510 1.86581 1.77784 1.42844 1.20529 1.24272 0.72563 0.85913 0.85391 1.90547 1.48667 1.17786 1.84433 1.21731 1.03999 0.99832 0.88894 1.17604 0.94964 0.92124 0.88524 0.95686 1.21045 0.94334 0.93553 1.44641 0.94605 1.25285 0.99558 0.96502 0.95268 1.69622 1.20645 1.12609 1.49510 0.85920 0.80435 0.80248 0.77581 1.20633 1.20480 1.20962 1.20214 0.96378 0.93849 0.95152 1.21107 1.02381 1.00130 0.92917 1.21179 1.00073 0.96934 0.97539 1.21230 0.99902 0.97171 0.98151 1.21387 1.01379 1.00838 0.93006 1.21564 0.95119 0.95255 0.99009 1.20164 0.96979 0.94970 0.94112 1.22194 1.00306 0.94456 1.00213 1.23194 0.93489 1.01635 0.88025 1.67723 1.15235 1.08799 1.29776 1.23163 0.94978 0.90053 0.98063 1.22240 0.99951 1.02467 0.94031 0.88810 0.90331 0.92488 0.84937 0.89589 0.92599 0.87345 0.84783 0.84591 0.85700 0.84640 0.83569 0.80055 0.79880 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.53 71.98 0.69 -3.05 16 2 C 0.12 3.56 2.80 29.85 0.08 3.64 16 3 H 0.08 2.61 7.06 -2.38 -0.02 2.59 16 4 O -0.36 -13.21 9.29 -51.40 -0.48 -13.69 16 5 C 0.47 20.51 7.68 71.24 0.55 21.06 16 6 O -0.53 -25.42 14.20 21.98 0.31 -25.11 16 7 C -0.11 -4.66 4.33 29.85 0.13 -4.53 16 8 C 0.09 4.16 1.98 -12.29 -0.02 4.13 16 9 H 0.02 1.22 7.89 -2.39 -0.02 1.20 16 10 C -0.50 -26.78 7.27 25.60 0.19 -26.60 16 11 H 0.04 2.06 7.82 -2.91 -0.02 2.04 16 12 C 0.03 1.76 5.14 84.65 0.44 2.20 16 13 N -0.89 -44.64 7.74 21.45 0.17 -44.47 16 14 Si 0.93 43.54 29.54 68.60 2.03 45.56 16 15 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 18 C -0.06 -2.48 4.68 -19.87 -0.09 -2.57 16 19 C -0.15 -5.99 9.70 22.27 0.22 -5.77 16 20 C -0.14 -4.82 10.05 22.27 0.22 -4.60 16 21 C -0.15 -4.87 10.05 22.27 0.22 -4.65 16 22 C -0.15 -5.43 10.05 22.27 0.22 -5.21 16 23 C -0.09 -3.88 7.56 22.27 0.17 -3.71 16 24 C -0.05 -1.44 5.01 -19.67 -0.10 -1.54 16 25 C -0.15 -3.73 9.46 22.36 0.21 -3.51 16 26 C 0.09 2.08 11.18 84.68 0.95 3.03 16 27 N -0.51 -12.41 10.36 -195.84 -2.03 -14.44 16 28 C 0.09 2.04 11.18 84.68 0.95 2.98 16 29 C -0.17 -3.88 9.78 22.36 0.22 -3.66 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.13 6.23 4.65 -2.39 -0.01 6.22 16 34 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.26 12.90 8.31 -92.71 -0.77 12.13 16 36 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 37 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 38 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 40 H 0.14 6.07 4.97 -2.91 -0.01 6.06 16 41 H 0.15 3.34 7.85 -2.91 -0.02 3.31 16 42 H 0.18 2.93 8.06 -2.91 -0.02 2.91 16 43 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 44 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -62.23 367.39 6.23 -55.99 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 1.00 Total: 28.51 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 5.23 Total: -32.36 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -1.86 Total: -58.91 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -0.17 Total: -38.80 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -62.23 6.23 -55.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795980804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.058 kcal (2) G-P(sol) polarization free energy of solvation -62.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds