Wall clock time and date at job start Tue Mar 31 2020 16:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47130 * 2 1 4 4 C 1.53001 * 109.46897 * 240.00200 * 2 1 3 5 5 C 1.53003 * 109.47152 * 175.00309 * 4 2 1 6 6 H 1.08994 * 109.47157 * 54.99522 * 5 4 2 7 7 O 1.42900 * 109.46452 * 294.99717 * 5 4 2 8 8 C 1.50697 * 109.47081 * 174.99970 * 5 4 2 9 9 C 1.33385 * 125.20045 * 264.99343 * 8 5 4 10 10 C 1.38424 * 114.92103 * 180.02562 * 9 8 5 11 11 C 1.33394 * 114.92041 * 359.97438 * 10 9 8 12 12 S 1.75884 * 125.20291 * 85.03769 * 8 5 4 13 13 N 1.46497 * 109.47238 * 120.00040 * 2 1 3 14 14 C 1.34781 * 120.00175 * 274.99797 * 13 2 1 15 15 O 1.21277 * 119.99709 * 0.02562 * 14 13 2 16 16 C 1.50693 * 119.99877 * 180.02562 * 14 13 2 17 17 C 1.53005 * 109.46811 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47114 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47221 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47228 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00306 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99925 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00136 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99976 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46855 * 60.00069 * 24 22 20 26 26 H 1.48500 * 109.47200 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47011 * 300.00215 * 24 22 20 28 28 H 1.09004 * 109.46945 * 299.99885 * 1 2 3 29 29 H 1.08992 * 109.47158 * 60.00048 * 1 2 3 30 30 H 1.08991 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47512 * 54.99915 * 4 2 1 32 32 H 1.09002 * 109.46711 * 294.99531 * 4 2 1 33 33 H 0.96703 * 114.00364 * 300.00036 * 7 5 4 34 34 H 1.07999 * 122.54451 * 0.02562 * 9 8 5 35 35 H 1.08001 * 122.54383 * 180.02562 * 10 9 8 36 36 H 1.07995 * 125.20296 * 179.73420 * 11 10 9 37 37 H 0.97000 * 120.00003 * 95.00344 * 13 2 1 38 38 H 1.09001 * 109.47343 * 299.99854 * 16 14 13 39 39 H 1.08998 * 109.47426 * 60.00555 * 16 14 13 40 40 H 1.08995 * 109.47289 * 299.99668 * 17 16 14 41 41 H 1.08998 * 109.47369 * 59.99895 * 17 16 14 42 42 H 1.09001 * 109.47352 * 300.00069 * 18 17 16 43 43 H 1.09005 * 109.46966 * 60.00221 * 18 17 16 44 44 H 1.08995 * 109.47343 * 299.99964 * 19 18 17 45 45 H 1.09005 * 109.46862 * 60.00290 * 19 18 17 46 46 H 0.97001 * 120.00361 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6134 -1.3138 6 1 3.9954 -0.9923 -0.3869 7 8 3.9385 0.7549 -1.4881 8 6 4.0772 -1.4259 -2.4748 9 6 4.5165 -2.6831 -2.3991 10 6 4.9399 -3.2264 -3.5998 11 6 4.8439 -2.4105 -4.6508 12 16 4.1886 -0.8613 -4.1369 13 7 2.0184 -0.6906 1.1961 14 6 2.1472 -0.0183 2.3572 15 8 1.8583 1.1584 2.4117 16 6 2.6501 -0.7286 3.5874 17 6 2.7021 0.2547 4.7585 18 6 3.2120 -0.4665 6.0077 19 6 3.2647 0.5168 7.1786 20 6 3.7664 -0.1938 8.4093 21 1 4.0226 -1.2418 8.3610 22 6 3.8984 0.4942 9.5969 23 7 3.5860 1.7702 9.6558 24 14 4.5210 -0.3865 11.1221 25 1 5.8821 -0.9211 10.8640 26 1 4.5708 0.5677 12.2589 27 1 3.6045 -1.5061 11.4560 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -0.2618 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.5895 1.1582 -2.2948 34 1 4.5401 -3.2354 -1.4713 35 1 5.3184 -4.2347 -3.6799 36 1 5.1299 -2.6610 -5.6616 37 1 2.2491 -1.6317 1.1526 38 1 1.9779 -1.5509 3.8325 39 1 3.6494 -1.1203 3.3978 40 1 3.3745 1.0767 4.5132 41 1 1.7030 0.6469 4.9483 42 1 2.5393 -1.2884 6.2529 43 1 4.2112 -0.8590 5.8182 44 1 3.9377 1.3383 6.9332 45 1 2.2657 0.9097 7.3683 46 1 3.6786 2.2541 10.4914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807138172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:48 Heat of formation + Delta-G solvation = -87.322055 kcal Electronic energy + Delta-G solvation = -24321.729800 eV Core-core repulsion = 20722.864279 eV Total energy + Delta-G solvation = -3598.865521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.03449 -38.90313 -37.45473 -35.76908 -34.75873 -32.65131 -32.05331 -30.99068 -29.40607 -28.25880 -25.67449 -24.97865 -23.04015 -22.53556 -21.14832 -20.32977 -19.93824 -19.84859 -18.37385 -16.97165 -16.51332 -16.21806 -16.11578 -16.02067 -15.51230 -15.18846 -14.55636 -14.43333 -14.06276 -13.73308 -13.71018 -13.34061 -13.16672 -12.80157 -12.70326 -12.53049 -12.28989 -12.18441 -12.02616 -11.95300 -11.63391 -11.54193 -11.25695 -11.16491 -10.93566 -10.66584 -10.50825 -10.47862 -10.36386 -9.72905 -9.56886 -9.25731 -9.17727 -9.05089 -8.95226 -8.93985 -8.27064 -5.91846 -3.94357 0.48663 1.10417 1.49013 2.25880 2.80430 3.14113 3.37470 3.41716 3.44012 3.88750 3.96596 4.40407 4.51529 4.57998 4.63332 4.65357 4.96724 4.99984 5.06637 5.10280 5.17809 5.30028 5.37062 5.42222 5.43483 5.44430 5.47187 5.63768 5.78924 5.81634 5.94202 5.97603 6.00651 6.19026 6.35497 6.41978 6.60028 6.89067 7.07192 7.08187 7.24381 7.48812 7.77529 7.94330 8.09778 8.34478 8.51444 9.13148 9.68934 11.19402 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020311 B = 0.001856 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.238873 B =15078.538532 C =15824.574764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 H 0.097 0.903 4 C -0.154 4.154 5 C 0.178 3.822 6 H 0.119 0.881 7 O -0.543 6.543 8 C -0.210 4.210 9 C -0.131 4.131 10 C -0.133 4.133 11 C -0.212 4.212 12 S 0.103 5.897 13 N -0.735 5.735 14 C 0.514 3.486 15 O -0.532 6.532 16 C -0.139 4.139 17 C -0.103 4.103 18 C -0.110 4.110 19 C 0.020 3.980 20 C -0.520 4.520 21 H 0.053 0.947 22 C 0.055 3.945 23 N -0.895 5.895 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.278 1.278 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.371 0.629 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 -10.450 -33.695 35.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.115 0.885 4 C -0.193 4.193 5 C 0.117 3.883 6 H 0.136 0.864 7 O -0.347 6.347 8 C -0.328 4.328 9 C -0.162 4.162 10 C -0.163 4.163 11 C -0.348 4.348 12 S 0.366 5.634 13 N -0.389 5.389 14 C 0.301 3.699 15 O -0.407 6.407 16 C -0.179 4.179 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.017 4.017 20 C -0.559 4.559 21 H 0.072 0.928 22 C -0.146 4.146 23 N -0.534 5.534 24 Si 0.720 3.280 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.218 0.782 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.182 0.818 37 H 0.230 0.770 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.379 -8.175 -33.718 34.776 hybrid contribution 0.547 -2.374 0.865 2.585 sum -1.832 -10.548 -32.853 34.553 Atomic orbital electron populations 1.22179 0.95204 1.02049 1.02763 1.20850 0.93845 0.98175 0.83227 0.88542 1.22651 0.95146 1.02603 0.98859 1.20420 0.93225 0.80626 0.94044 0.86372 1.86740 1.77130 1.23936 1.46931 1.25538 1.08841 0.99858 0.98549 1.20121 1.01672 0.94641 0.99748 1.20219 1.02902 1.01450 0.91766 1.25643 1.08874 0.96808 1.03461 1.84171 1.62889 1.15605 1.00725 1.46187 1.69025 1.13775 1.09917 1.21060 0.76833 0.87489 0.84497 1.90704 1.48985 1.16172 1.84837 1.21796 1.02407 1.00434 0.93282 1.21443 1.02428 0.97268 0.92967 1.21649 0.99136 0.99229 0.94769 1.19095 0.97219 0.94147 0.91286 1.21249 1.43661 0.96250 0.94715 0.92831 1.25045 0.95720 0.94880 0.98958 1.69963 1.48741 1.08151 1.26583 0.86670 0.79369 0.79372 0.82630 1.20299 1.21334 1.20322 0.91615 0.91869 0.92570 0.89840 0.89902 0.78168 0.84004 0.84066 0.81783 0.77012 0.89257 0.89251 0.91790 0.91862 0.93535 0.93515 0.96576 0.96602 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.14 1.26 2.53 -67.93 -0.17 1.09 16 3 H 0.10 1.12 7.13 -51.93 -0.37 0.75 16 4 C -0.15 -0.92 4.41 -26.73 -0.12 -1.04 16 5 C 0.18 1.31 3.35 -27.88 -0.09 1.21 16 6 H 0.12 0.93 7.61 -51.93 -0.40 0.54 16 7 O -0.54 -4.96 12.69 -35.23 -0.45 -5.40 16 8 C -0.21 -1.48 5.52 -36.01 -0.20 -1.68 16 9 C -0.13 -0.87 10.05 -41.21 -0.41 -1.29 16 10 C -0.13 -0.81 10.18 -41.21 -0.42 -1.23 16 11 C -0.21 -1.26 11.23 29.04 0.33 -0.93 16 12 S 0.10 0.65 22.53 -107.50 -2.42 -1.78 16 13 N -0.74 -6.96 4.45 -53.81 -0.24 -7.20 16 14 C 0.51 7.09 7.79 -10.99 -0.09 7.01 16 15 O -0.53 -9.73 15.64 5.56 0.09 -9.65 16 16 C -0.14 -1.86 5.70 -27.88 -0.16 -2.02 16 17 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 18 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 19 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 20 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 21 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 22 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 23 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 24 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.37 2.27 8.39 45.56 0.38 2.65 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 36 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.40 2.55 8.60 -40.82 -0.35 2.20 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 41 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 396.62 15.07 5.98 5.98 Total: -1.00 -35.65 396.62 -10.15 -45.80 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.04 Total: 0.14 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.79 Total: -17.93 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.50 Total: -34.26 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.36 Total: -15.05 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.42 Total: -1.78 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.65 -10.15 -45.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807138172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.521 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds