Wall clock time and date at job start Tue Mar 31 2020 16:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47130 * 2 1 4 4 C 1.53001 * 109.46897 * 240.00200 * 2 1 3 5 5 C 1.53003 * 109.47152 * 175.00309 * 4 2 1 6 6 H 1.08994 * 109.47157 * 54.99522 * 5 4 2 7 7 O 1.42900 * 109.46452 * 294.99717 * 5 4 2 8 8 C 1.50697 * 109.47081 * 174.99970 * 5 4 2 9 9 C 1.33385 * 125.20045 * 264.99343 * 8 5 4 10 10 C 1.38424 * 114.92103 * 180.02562 * 9 8 5 11 11 C 1.33394 * 114.92041 * 359.97438 * 10 9 8 12 12 S 1.75884 * 125.20291 * 85.03769 * 8 5 4 13 13 N 1.46497 * 109.47238 * 120.00040 * 2 1 3 14 14 C 1.34781 * 120.00175 * 274.99797 * 13 2 1 15 15 O 1.21277 * 119.99709 * 0.02562 * 14 13 2 16 16 C 1.50693 * 119.99877 * 180.02562 * 14 13 2 17 17 C 1.53005 * 109.46811 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47114 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47221 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47228 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00306 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99925 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00136 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99976 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46855 * 60.00069 * 24 22 20 26 26 H 1.48500 * 109.47200 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47011 * 300.00215 * 24 22 20 28 28 H 1.09004 * 109.46945 * 299.99885 * 1 2 3 29 29 H 1.08992 * 109.47158 * 60.00048 * 1 2 3 30 30 H 1.08991 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47512 * 54.99915 * 4 2 1 32 32 H 1.09002 * 109.46711 * 294.99531 * 4 2 1 33 33 H 0.96703 * 114.00364 * 300.00036 * 7 5 4 34 34 H 1.07999 * 122.54451 * 0.02562 * 9 8 5 35 35 H 1.08001 * 122.54383 * 180.02562 * 10 9 8 36 36 H 1.07995 * 125.20296 * 179.73420 * 11 10 9 37 37 H 0.97000 * 120.00003 * 95.00344 * 13 2 1 38 38 H 1.09001 * 109.47343 * 299.99854 * 16 14 13 39 39 H 1.08998 * 109.47426 * 60.00555 * 16 14 13 40 40 H 1.08995 * 109.47289 * 299.99668 * 17 16 14 41 41 H 1.08998 * 109.47369 * 59.99895 * 17 16 14 42 42 H 1.09001 * 109.47352 * 300.00069 * 18 17 16 43 43 H 1.09005 * 109.46966 * 60.00221 * 18 17 16 44 44 H 1.08995 * 109.47343 * 299.99964 * 19 18 17 45 45 H 1.09005 * 109.46862 * 60.00290 * 19 18 17 46 46 H 0.97001 * 120.00361 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6134 -1.3138 6 1 3.9954 -0.9923 -0.3869 7 8 3.9385 0.7549 -1.4881 8 6 4.0772 -1.4259 -2.4748 9 6 4.5165 -2.6831 -2.3991 10 6 4.9399 -3.2264 -3.5998 11 6 4.8439 -2.4105 -4.6508 12 16 4.1886 -0.8613 -4.1369 13 7 2.0184 -0.6906 1.1961 14 6 2.1472 -0.0183 2.3572 15 8 1.8583 1.1584 2.4117 16 6 2.6501 -0.7286 3.5874 17 6 2.7021 0.2547 4.7585 18 6 3.2120 -0.4665 6.0077 19 6 3.2647 0.5168 7.1786 20 6 3.7664 -0.1938 8.4093 21 1 4.0226 -1.2418 8.3610 22 6 3.8984 0.4942 9.5969 23 7 3.5860 1.7702 9.6558 24 14 4.5210 -0.3865 11.1221 25 1 5.8821 -0.9211 10.8640 26 1 4.5708 0.5677 12.2589 27 1 3.6045 -1.5061 11.4560 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -0.2618 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.5895 1.1582 -2.2948 34 1 4.5401 -3.2354 -1.4713 35 1 5.3184 -4.2347 -3.6799 36 1 5.1299 -2.6610 -5.6616 37 1 2.2491 -1.6317 1.1526 38 1 1.9779 -1.5509 3.8325 39 1 3.6494 -1.1203 3.3978 40 1 3.3745 1.0767 4.5132 41 1 1.7030 0.6469 4.9483 42 1 2.5393 -1.2884 6.2529 43 1 4.2112 -0.8590 5.8182 44 1 3.9377 1.3383 6.9332 45 1 2.2657 0.9097 7.3683 46 1 3.6786 2.2541 10.4914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807138172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:47 Heat of formation + Delta-G solvation = -111.494952 kcal Electronic energy + Delta-G solvation = -24322.778015 eV Core-core repulsion = 20722.864279 eV Total energy + Delta-G solvation = -3599.913736 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98792 -39.56169 -38.02091 -36.81670 -36.30746 -34.59792 -32.96319 -31.80342 -30.94445 -28.80002 -27.44846 -25.55088 -24.41258 -23.35909 -22.16457 -21.63735 -21.29508 -20.33819 -18.91380 -18.40893 -17.96311 -17.20015 -16.94364 -16.79559 -16.51479 -16.43925 -15.83212 -15.51606 -14.99071 -14.90808 -14.54998 -14.35508 -13.98862 -13.82265 -13.60346 -13.56997 -13.36311 -13.27174 -13.07825 -12.82590 -12.78955 -12.76135 -12.50192 -12.36037 -12.14447 -12.11001 -11.87541 -11.67741 -11.36639 -11.34185 -11.26339 -11.15039 -10.69377 -10.53828 -10.09108 -9.58904 -9.39739 -8.17687 -6.30137 0.03331 0.65739 1.05267 1.40510 1.44894 1.52705 1.72825 1.81928 2.25880 2.42842 3.14610 3.33990 3.44278 3.83578 3.88968 4.06256 4.08181 4.14002 4.16886 4.25779 4.41809 4.47044 4.62807 4.67014 4.67775 4.70902 4.78681 4.81194 4.86515 4.88846 4.95407 5.13203 5.20229 5.20809 5.28987 5.34759 5.35863 5.38875 5.55241 5.56490 5.61673 5.78884 5.88673 6.25894 6.58551 6.63243 6.88062 7.36787 7.39286 8.94310 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020311 B = 0.001856 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.238873 B =15078.538532 C =15824.574764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 H 0.064 0.936 4 C -0.139 4.139 5 C 0.179 3.821 6 H 0.112 0.888 7 O -0.567 6.567 8 C -0.223 4.223 9 C -0.136 4.136 10 C -0.144 4.144 11 C -0.216 4.216 12 S 0.096 5.904 13 N -0.714 5.714 14 C 0.512 3.488 15 O -0.587 6.587 16 C -0.129 4.129 17 C -0.096 4.096 18 C -0.095 4.095 19 C 0.018 3.982 20 C -0.542 4.542 21 H 0.067 0.933 22 C -0.008 4.008 23 N -0.938 5.938 24 Si 0.971 3.029 25 H -0.264 1.264 26 H -0.285 1.285 27 H -0.264 1.264 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.381 0.619 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.183 0.817 37 H 0.415 0.585 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.060 0.940 44 H -0.017 1.017 45 H -0.016 1.016 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 -13.887 -34.846 37.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.177 4.177 5 C 0.118 3.882 6 H 0.129 0.871 7 O -0.374 6.374 8 C -0.341 4.341 9 C -0.167 4.167 10 C -0.174 4.174 11 C -0.352 4.352 12 S 0.359 5.641 13 N -0.367 5.367 14 C 0.300 3.700 15 O -0.467 6.467 16 C -0.169 4.169 17 C -0.134 4.134 18 C -0.133 4.133 19 C -0.019 4.019 20 C -0.580 4.580 21 H 0.085 0.915 22 C -0.205 4.205 23 N -0.578 5.578 24 Si 0.795 3.205 25 H -0.189 1.189 26 H -0.211 1.211 27 H -0.189 1.189 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.230 0.770 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.200 0.800 37 H 0.253 0.747 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.002 0.998 45 H 0.003 0.997 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.936 -11.672 -34.919 36.869 hybrid contribution 0.414 -1.268 1.150 1.761 sum -1.522 -12.940 -33.769 36.196 Atomic orbital electron populations 1.22134 0.94641 1.02962 1.02003 1.20870 0.94215 0.97015 0.83993 0.91729 1.22544 0.94214 1.03458 0.97533 1.20411 0.93902 0.79872 0.94034 0.87086 1.86700 1.77703 1.25137 1.47860 1.25496 1.09846 1.00115 0.98613 1.20393 1.01072 0.94598 1.00604 1.20479 1.02954 1.02355 0.91577 1.25971 1.08383 0.96348 1.04462 1.84188 1.63107 1.16216 1.00591 1.45983 1.67318 1.14540 1.08875 1.21142 0.76382 0.86816 0.85700 1.90694 1.51699 1.18569 1.85756 1.21676 1.04836 0.99439 0.90913 1.21236 1.00335 0.97687 0.94151 1.21447 1.00502 0.98024 0.93302 1.19063 0.94408 0.94648 0.93807 1.21726 1.43675 0.97014 0.95599 0.91517 1.26120 0.95761 0.95664 1.02998 1.70129 1.49890 1.10102 1.27681 0.85418 0.79295 0.78189 0.77629 1.18902 1.21090 1.18863 0.94812 0.90267 0.90710 0.88519 0.87799 0.77001 0.82674 0.82379 0.80017 0.74729 0.86281 0.86517 0.94165 0.93983 0.91977 0.92113 0.99842 0.99747 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.48 71.98 0.68 -1.83 16 2 C 0.14 2.40 2.53 44.99 0.11 2.51 16 3 H 0.06 1.55 7.13 -2.39 -0.02 1.53 16 4 C -0.14 -1.37 4.41 30.60 0.14 -1.24 16 5 C 0.18 2.38 3.35 29.85 0.10 2.48 16 6 H 0.11 1.59 7.61 -2.39 -0.02 1.57 16 7 O -0.57 -10.26 12.69 -148.98 -1.89 -12.15 16 8 C -0.22 -2.76 5.52 24.59 0.14 -2.63 16 9 C -0.14 -1.50 10.05 21.22 0.21 -1.29 16 10 C -0.14 -1.43 10.18 21.22 0.22 -1.21 16 11 C -0.22 -2.14 11.23 66.72 0.75 -1.39 16 12 S 0.10 1.07 22.53 -56.49 -1.27 -0.20 16 13 N -0.71 -12.40 4.45 -442.53 -1.97 -14.37 16 14 C 0.51 13.92 7.79 87.65 0.68 14.61 16 15 O -0.59 -22.46 15.64 -3.02 -0.05 -22.51 16 16 C -0.13 -3.22 5.70 29.85 0.17 -3.05 16 17 C -0.10 -3.57 4.50 30.60 0.14 -3.43 16 18 C -0.10 -3.97 5.15 30.59 0.16 -3.81 16 19 C 0.02 1.00 4.97 29.85 0.15 1.15 16 20 C -0.54 -31.86 9.11 25.60 0.23 -31.63 16 21 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 22 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 23 N -0.94 -59.77 13.29 21.45 0.28 -59.49 16 24 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 25 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 27 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 28 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.38 4.64 8.39 -74.05 -0.62 4.02 16 34 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.42 4.07 8.60 -92.71 -0.80 3.28 16 38 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 41 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 43 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 44 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 45 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 46 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -81.03 396.62 1.02 -80.01 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -0.45 Total: 12.23 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 4.34 Total: -30.79 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -1.68 Total: -73.86 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -1.94 Total: -34.66 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -1.27 Total: -0.20 kcal Total: -81.03 1.02 -80.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807138172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.487 kcal (2) G-P(sol) polarization free energy of solvation -81.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds