Wall clock time and date at job start Tue Mar 31 2020 14:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53002 * 109.46819 * 2 1 4 4 H 1.08997 * 109.47339 * 54.99543 * 3 2 1 5 5 O 1.45207 * 109.46791 * 294.99713 * 3 2 1 6 6 C 1.34224 * 116.99815 * 90.00519 * 5 3 2 7 7 O 1.20829 * 120.00369 * 359.97438 * 6 5 3 8 8 C 1.50707 * 119.99811 * 180.02562 * 6 5 3 9 9 C 1.50701 * 109.46977 * 180.02562 * 8 6 5 10 10 C 1.37637 * 120.12547 * 264.99579 * 9 8 6 11 11 C 1.38613 * 120.25232 * 180.29744 * 10 9 8 12 12 C 1.38664 * 120.49242 * 359.44597 * 11 10 9 13 13 C 1.37589 * 120.25118 * 0.55863 * 12 11 10 14 14 C 1.40693 * 120.13116 * 85.02206 * 9 8 6 15 15 C 1.41397 * 120.24389 * 359.95203 * 14 9 8 16 16 H 1.08003 * 119.99955 * 334.08061 * 15 14 9 17 17 C 1.39940 * 120.00210 * 154.08724 * 15 14 9 18 18 N 1.30822 * 119.99912 * 343.62218 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 163.63321 * 17 15 14 20 20 H 1.48496 * 109.47262 * 59.99447 * 19 17 15 21 21 H 1.48504 * 109.47090 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46694 * 299.99081 * 19 17 15 23 23 C 1.50694 * 109.47074 * 175.00265 * 3 2 1 24 24 C 1.38648 * 120.79394 * 84.70991 * 23 3 2 25 25 C 1.38211 * 119.16148 * 179.75793 * 24 23 3 26 26 N 1.31867 * 120.76559 * 0.53389 * 25 24 23 27 27 C 1.31874 * 121.72218 * 359.74273 * 26 25 24 28 28 C 1.38201 * 120.76778 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.46518 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46885 * 300.00422 * 1 2 3 31 31 H 1.08998 * 109.46990 * 60.00824 * 1 2 3 32 32 H 1.08997 * 109.46885 * 239.99578 * 2 1 3 33 33 H 1.08999 * 109.47098 * 119.99719 * 2 1 3 34 34 H 1.08998 * 109.47152 * 59.99388 * 8 6 5 35 35 H 1.09003 * 109.46597 * 299.99293 * 8 6 5 36 36 H 1.08001 * 119.87531 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.75701 * 179.69812 * 11 10 9 38 38 H 1.08006 * 119.86930 * 180.29907 * 12 11 10 39 39 H 1.08001 * 120.12932 * 179.74849 * 13 12 11 40 40 H 0.97001 * 120.00439 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.41795 * 0.02562 * 24 23 3 42 42 H 1.07996 * 119.61492 * 180.25751 * 25 24 23 43 43 H 1.08003 * 119.61630 * 179.97438 * 27 26 25 44 44 H 1.07995 * 120.41798 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 8 1.6559 2.0916 -1.2408 6 6 0.4728 2.7254 -1.2561 7 8 -0.2193 2.7370 -0.2657 8 6 0.0069 3.4214 -2.5090 9 6 -1.3406 4.0497 -2.2631 10 6 -2.4903 3.3748 -2.6054 11 6 -3.7309 3.9527 -2.3861 12 6 -3.8294 5.2102 -1.8100 13 6 -2.6935 5.9032 -1.4600 14 6 -1.4284 5.3286 -1.6833 15 6 -0.2542 6.0313 -1.3272 16 1 0.6509 5.4887 -1.0970 17 6 -0.2647 7.4296 -1.2728 18 7 -1.2311 8.0992 -1.8467 19 14 1.1011 8.3400 -0.3811 20 1 2.4059 8.0153 -1.0113 21 1 0.8601 9.8028 -0.4685 22 1 1.1231 7.9259 1.0448 23 6 3.5419 1.4444 0.1238 24 6 4.3466 1.3011 -0.9962 25 6 5.7203 1.3126 -0.8444 26 7 6.2660 1.4472 0.3485 27 6 5.5318 1.5802 1.4359 28 6 4.1518 1.5836 1.3611 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 -0.0719 2.6968 -3.3193 35 1 0.7239 4.1957 -2.7823 36 1 -2.4254 2.3929 -3.0505 37 1 -4.6277 3.4181 -2.6622 38 1 -4.8014 5.6490 -1.6392 39 1 -2.7724 6.8842 -1.0151 40 1 -1.2387 9.0684 -1.8087 41 1 3.9056 1.1863 -1.9753 42 1 6.3540 1.2058 -1.7123 43 1 6.0146 1.6877 2.3960 44 1 3.5561 1.6933 2.2552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839008302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:35 Heat of formation + Delta-G solvation = -44.157116 kcal Electronic energy + Delta-G solvation = -27182.823446 eV Core-core repulsion = 23450.385746 eV Total energy + Delta-G solvation = -3732.437700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.67982 -39.81243 -37.76460 -36.30072 -34.12789 -33.69229 -32.14048 -31.78589 -31.32925 -29.53899 -27.59863 -26.52610 -25.08590 -23.64664 -22.81559 -21.88377 -21.00591 -20.48866 -19.39405 -17.42903 -17.32778 -17.14120 -16.14262 -16.00640 -15.74477 -15.48265 -15.15390 -14.56811 -14.15083 -14.03934 -13.87101 -13.75411 -13.61091 -13.37236 -12.90110 -12.62422 -12.34436 -12.01496 -11.86305 -11.72451 -11.60594 -11.43551 -11.28561 -11.16347 -11.04507 -10.87613 -10.77042 -10.46385 -10.36830 -9.77201 -9.70371 -9.56213 -9.53722 -9.44708 -9.27563 -9.21404 -7.40892 -7.38069 -6.80354 -4.42476 0.99783 1.05828 2.64095 2.84203 2.89482 3.03205 3.06673 3.22693 3.26195 3.68614 3.89335 4.31738 4.35279 4.59706 4.69896 4.81317 4.98925 5.01903 5.06175 5.12537 5.44968 5.49382 5.52015 5.66085 5.71603 5.73316 5.82751 5.89211 5.90636 5.97373 6.05508 6.21185 6.27157 6.34861 6.39516 6.44488 6.55114 6.70247 6.92120 7.01977 7.21994 7.34348 7.56733 7.82192 7.83912 7.97953 8.05940 8.23379 8.40849 8.57654 8.83576 8.93088 10.13651 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011371 B = 0.004222 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.816850 B = 6630.311427 C = 8452.927827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.125 3.875 4 H 0.097 0.903 5 O -0.358 6.358 6 C 0.460 3.540 7 O -0.485 6.485 8 C -0.041 4.041 9 C -0.195 4.195 10 C -0.076 4.076 11 C -0.240 4.240 12 C -0.104 4.104 13 C -0.158 4.158 14 C 0.132 3.868 15 C -0.458 4.458 16 H 0.073 0.927 17 C 0.079 3.921 18 N -0.791 5.791 19 Si 0.902 3.098 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.039 4.039 24 C -0.145 4.145 25 C 0.095 3.905 26 N -0.487 5.487 27 C 0.096 3.904 28 C -0.162 4.162 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.282 0.718 41 H 0.142 0.858 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.874 -11.495 2.354 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.069 3.931 4 H 0.115 0.885 5 O -0.277 6.277 6 C 0.302 3.698 7 O -0.370 6.370 8 C -0.079 4.079 9 C -0.196 4.196 10 C -0.094 4.094 11 C -0.259 4.259 12 C -0.122 4.122 13 C -0.178 4.178 14 C 0.129 3.871 15 C -0.488 4.488 16 H 0.091 0.909 17 C -0.139 4.139 18 N -0.416 5.416 19 Si 0.726 3.274 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.047 4.047 24 C -0.165 4.165 25 C -0.062 4.062 26 N -0.196 5.196 27 C -0.060 4.060 28 C -0.182 4.182 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.160 0.840 42 H 0.174 0.826 43 H 0.174 0.826 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.499 -11.247 2.704 14.968 hybrid contribution -0.445 0.547 0.458 0.841 sum 9.054 -10.700 3.162 14.369 Atomic orbital electron populations 1.21839 0.94095 1.01362 1.03488 1.21915 0.97451 0.94383 1.02973 1.21402 0.89633 0.94098 0.87946 0.88483 1.86590 1.39144 1.64397 1.37571 1.24473 0.78009 0.75391 0.91917 1.90641 1.54428 1.56311 1.35571 1.19996 0.97792 0.98771 0.91301 1.19017 0.90807 0.98448 1.11354 1.20307 0.92726 0.96918 0.99454 1.20312 0.95571 0.97865 1.12178 1.20703 0.97054 0.94862 0.99598 1.21299 0.91479 1.00585 1.04387 1.17327 0.93045 0.89784 0.86921 1.19449 0.97368 0.90844 1.41106 0.90917 1.25863 0.96681 0.98223 0.93138 1.69799 1.30711 1.09136 1.31967 0.86462 0.81549 0.78269 0.81112 1.18924 1.20164 1.18832 1.20132 0.94710 0.96059 0.93816 1.22074 0.94597 0.99828 0.99988 1.22796 0.92780 0.95389 0.95194 1.67659 1.41172 1.11706 0.99111 1.22701 0.90446 0.95574 0.97313 1.21999 0.96515 1.01781 0.97936 0.92766 0.91615 0.92385 0.90958 0.90524 0.89436 0.87519 0.89611 0.89530 0.89468 0.86464 0.90745 0.84011 0.82600 0.82621 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.57 37.16 0.32 -1.69 16 2 C -0.13 -1.53 5.63 -26.72 -0.15 -1.68 16 3 C 0.12 1.72 2.50 -27.88 -0.07 1.65 16 4 H 0.10 1.48 7.09 -51.93 -0.37 1.12 16 5 O -0.36 -5.78 9.07 -39.24 -0.36 -6.13 16 6 C 0.46 8.73 6.05 36.01 0.22 8.95 16 7 O -0.48 -10.49 13.18 -18.75 -0.25 -10.74 16 8 C -0.04 -0.80 5.29 -29.03 -0.15 -0.95 16 9 C -0.19 -4.51 4.43 -103.91 -0.46 -4.97 16 10 C -0.08 -1.68 9.66 -39.66 -0.38 -2.06 16 11 C -0.24 -5.38 10.05 -39.29 -0.39 -5.78 16 12 C -0.10 -2.45 10.02 -39.66 -0.40 -2.85 16 13 C -0.16 -4.11 8.68 -38.88 -0.34 -4.45 16 14 C 0.13 3.41 5.56 -106.83 -0.59 2.82 16 15 C -0.46 -11.81 8.14 -37.74 -0.31 -12.12 16 16 H 0.07 1.83 6.68 -52.48 -0.35 1.48 16 17 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 18 N -0.79 -20.03 10.97 55.55 0.61 -19.42 16 19 Si 0.90 18.73 29.59 -169.99 -5.03 13.70 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.04 -0.49 5.04 -104.32 -0.53 -1.01 16 24 C -0.15 -1.69 9.44 -39.44 -0.37 -2.06 16 25 C 0.10 1.05 11.18 -17.55 -0.20 0.86 16 26 N -0.49 -5.99 10.36 -13.25 -0.14 -6.12 16 27 C 0.10 1.04 11.18 -17.55 -0.20 0.85 16 28 C -0.16 -1.80 9.80 -39.44 -0.39 -2.19 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.96 7.80 -51.93 -0.40 0.55 16 31 H 0.06 0.90 6.06 -51.93 -0.31 0.58 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 35 H 0.11 2.07 7.06 -51.93 -0.37 1.71 16 36 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.12 3.14 6.22 -52.49 -0.33 2.81 16 40 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 41 H 0.14 1.51 7.72 -52.49 -0.41 1.10 16 42 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -29.40 368.61 -9.98 -39.38 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.89 Total: 8.58 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -4.48 Total: -24.80 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.47 Total: -25.55 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.60 Total: -16.87 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.40 -9.98 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839008302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.774 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds