Wall clock time and date at job start Tue Mar 31 2020 14:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53002 * 109.46819 * 2 1 4 4 H 1.08997 * 109.47339 * 54.99543 * 3 2 1 5 5 O 1.45207 * 109.46791 * 294.99713 * 3 2 1 6 6 C 1.34224 * 116.99815 * 90.00519 * 5 3 2 7 7 O 1.20829 * 120.00369 * 359.97438 * 6 5 3 8 8 C 1.50707 * 119.99811 * 180.02562 * 6 5 3 9 9 C 1.50701 * 109.46977 * 180.02562 * 8 6 5 10 10 C 1.37637 * 120.12547 * 264.99579 * 9 8 6 11 11 C 1.38613 * 120.25232 * 180.29744 * 10 9 8 12 12 C 1.38664 * 120.49242 * 359.44597 * 11 10 9 13 13 C 1.37589 * 120.25118 * 0.55863 * 12 11 10 14 14 C 1.40693 * 120.13116 * 85.02206 * 9 8 6 15 15 C 1.41397 * 120.24389 * 359.95203 * 14 9 8 16 16 H 1.08003 * 119.99955 * 334.08061 * 15 14 9 17 17 C 1.39940 * 120.00210 * 154.08724 * 15 14 9 18 18 N 1.30822 * 119.99912 * 343.62218 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 163.63321 * 17 15 14 20 20 H 1.48496 * 109.47262 * 59.99447 * 19 17 15 21 21 H 1.48504 * 109.47090 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46694 * 299.99081 * 19 17 15 23 23 C 1.50694 * 109.47074 * 175.00265 * 3 2 1 24 24 C 1.38648 * 120.79394 * 84.70991 * 23 3 2 25 25 C 1.38211 * 119.16148 * 179.75793 * 24 23 3 26 26 N 1.31867 * 120.76559 * 0.53389 * 25 24 23 27 27 C 1.31874 * 121.72218 * 359.74273 * 26 25 24 28 28 C 1.38201 * 120.76778 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.46518 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46885 * 300.00422 * 1 2 3 31 31 H 1.08998 * 109.46990 * 60.00824 * 1 2 3 32 32 H 1.08997 * 109.46885 * 239.99578 * 2 1 3 33 33 H 1.08999 * 109.47098 * 119.99719 * 2 1 3 34 34 H 1.08998 * 109.47152 * 59.99388 * 8 6 5 35 35 H 1.09003 * 109.46597 * 299.99293 * 8 6 5 36 36 H 1.08001 * 119.87531 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.75701 * 179.69812 * 11 10 9 38 38 H 1.08006 * 119.86930 * 180.29907 * 12 11 10 39 39 H 1.08001 * 120.12932 * 179.74849 * 13 12 11 40 40 H 0.97001 * 120.00439 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.41795 * 0.02562 * 24 23 3 42 42 H 1.07996 * 119.61492 * 180.25751 * 25 24 23 43 43 H 1.08003 * 119.61630 * 179.97438 * 27 26 25 44 44 H 1.07995 * 120.41798 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 8 1.6559 2.0916 -1.2408 6 6 0.4728 2.7254 -1.2561 7 8 -0.2193 2.7370 -0.2657 8 6 0.0069 3.4214 -2.5090 9 6 -1.3406 4.0497 -2.2631 10 6 -2.4903 3.3748 -2.6054 11 6 -3.7309 3.9527 -2.3861 12 6 -3.8294 5.2102 -1.8100 13 6 -2.6935 5.9032 -1.4600 14 6 -1.4284 5.3286 -1.6833 15 6 -0.2542 6.0313 -1.3272 16 1 0.6509 5.4887 -1.0970 17 6 -0.2647 7.4296 -1.2728 18 7 -1.2311 8.0992 -1.8467 19 14 1.1011 8.3400 -0.3811 20 1 2.4059 8.0153 -1.0113 21 1 0.8601 9.8028 -0.4685 22 1 1.1231 7.9259 1.0448 23 6 3.5419 1.4444 0.1238 24 6 4.3466 1.3011 -0.9962 25 6 5.7203 1.3126 -0.8444 26 7 6.2660 1.4472 0.3485 27 6 5.5318 1.5802 1.4359 28 6 4.1518 1.5836 1.3611 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 -0.0719 2.6968 -3.3193 35 1 0.7239 4.1957 -2.7823 36 1 -2.4254 2.3929 -3.0505 37 1 -4.6277 3.4181 -2.6622 38 1 -4.8014 5.6490 -1.6392 39 1 -2.7724 6.8842 -1.0151 40 1 -1.2387 9.0684 -1.8087 41 1 3.9056 1.1863 -1.9753 42 1 6.3540 1.2058 -1.7123 43 1 6.0146 1.6877 2.3960 44 1 3.5561 1.6933 2.2552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839008302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:34 Heat of formation + Delta-G solvation = -56.991879 kcal Electronic energy + Delta-G solvation = -27183.380003 eV Core-core repulsion = 23450.385746 eV Total energy + Delta-G solvation = -3732.994257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87668 -40.92068 -39.47451 -37.70421 -35.54022 -35.26757 -33.52307 -33.03619 -32.16368 -31.38869 -29.10342 -27.81057 -26.89245 -24.52042 -23.74566 -23.23832 -22.84048 -21.73729 -21.02844 -19.11156 -18.76142 -18.28235 -17.48740 -17.21455 -17.02222 -16.65362 -16.38612 -16.19935 -15.62182 -15.48015 -15.00459 -14.94462 -14.60532 -14.54841 -14.41108 -14.18127 -13.65664 -13.51230 -13.38414 -13.12325 -12.95891 -12.82602 -12.76615 -12.65093 -12.51968 -12.44337 -12.15360 -11.94292 -11.62550 -11.36088 -11.26984 -11.23400 -11.06302 -10.64659 -10.44165 -10.10814 -9.25856 -9.22952 -8.63933 -6.34461 0.12212 0.18651 0.91755 1.08530 1.33079 1.40363 1.42309 1.50872 1.84887 2.16181 2.74937 2.82025 3.31974 3.58646 3.68779 3.80358 3.82255 3.99910 4.07261 4.17212 4.18139 4.23398 4.34778 4.44829 4.50094 4.56283 4.66668 4.69048 4.75649 4.76849 4.87997 4.91421 4.92719 4.99284 5.05091 5.15652 5.28215 5.30258 5.34066 5.50727 5.55406 5.72492 5.73880 6.00487 6.11967 6.19636 6.37801 6.69384 6.93952 6.96512 6.98245 7.06627 8.32254 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011371 B = 0.004222 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.816850 B = 6630.311427 C = 8452.927827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.123 3.877 4 H 0.078 0.922 5 O -0.352 6.352 6 C 0.468 3.532 7 O -0.517 6.517 8 C -0.043 4.043 9 C -0.197 4.197 10 C -0.083 4.083 11 C -0.241 4.241 12 C -0.113 4.113 13 C -0.192 4.192 14 C 0.100 3.900 15 C -0.485 4.485 16 H 0.068 0.932 17 C 0.041 3.959 18 N -0.821 5.821 19 Si 0.964 3.036 20 H -0.258 1.258 21 H -0.264 1.264 22 H -0.269 1.269 23 C -0.054 4.054 24 C -0.152 4.152 25 C 0.092 3.908 26 N -0.507 5.507 27 C 0.094 3.906 28 C -0.166 4.166 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.287 0.713 41 H 0.149 0.851 42 H 0.181 0.819 43 H 0.183 0.817 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.200 -13.177 2.141 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C 0.068 3.932 4 H 0.096 0.904 5 O -0.270 6.270 6 C 0.312 3.688 7 O -0.405 6.405 8 C -0.080 4.080 9 C -0.199 4.199 10 C -0.101 4.101 11 C -0.260 4.260 12 C -0.131 4.131 13 C -0.211 4.211 14 C 0.098 3.902 15 C -0.515 4.515 16 H 0.086 0.914 17 C -0.174 4.174 18 N -0.447 5.447 19 Si 0.785 3.215 20 H -0.182 1.182 21 H -0.188 1.188 22 H -0.194 1.194 23 C -0.063 4.063 24 C -0.171 4.171 25 C -0.064 4.064 26 N -0.217 5.217 27 C -0.063 4.063 28 C -0.186 4.186 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.167 0.833 42 H 0.198 0.802 43 H 0.200 0.800 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.834 -12.942 2.474 17.058 hybrid contribution -0.888 0.947 0.506 1.393 sum 9.945 -11.995 2.980 15.864 Atomic orbital electron populations 1.21790 0.95256 1.02077 1.01359 1.21904 0.96223 0.93165 1.04642 1.21583 0.90762 0.94821 0.86039 0.90388 1.86540 1.37559 1.64024 1.38884 1.24206 0.78393 0.75033 0.91154 1.90635 1.55589 1.57676 1.36567 1.19998 0.95843 0.99470 0.92659 1.19414 0.93117 0.97629 1.09721 1.20738 0.92253 0.98209 0.98921 1.20732 0.97082 0.97325 1.10822 1.20980 0.97242 0.95524 0.99360 1.21301 0.92766 1.00605 1.06451 1.17685 0.93144 0.91367 0.87981 1.19581 0.97375 0.91732 1.42807 0.91401 1.26576 0.98849 0.98613 0.93386 1.69854 1.32292 1.09613 1.32946 0.85522 0.78973 0.77609 0.79359 1.18186 1.18818 1.19372 1.20141 0.93747 0.97470 0.94906 1.22200 0.94930 0.99945 1.00045 1.23200 0.92899 0.94542 0.95759 1.67722 1.41819 1.12317 0.99804 1.23154 0.90389 0.94596 0.98124 1.22209 0.96956 1.01361 0.98063 0.90558 0.93545 0.94681 0.89664 0.88343 0.85891 0.87961 0.86238 0.86485 0.87571 0.88476 0.90207 0.83316 0.80171 0.80015 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 8.57 71.99 0.62 -3.16 16 2 C -0.12 -2.65 5.63 30.60 0.17 -2.48 16 3 C 0.12 3.30 2.50 29.85 0.07 3.37 16 4 H 0.08 2.41 7.09 -2.39 -0.02 2.39 16 5 O -0.35 -11.08 9.07 -51.36 -0.47 -11.54 16 6 C 0.47 17.70 6.05 71.24 0.43 18.13 16 7 O -0.52 -22.73 13.18 21.96 0.29 -22.44 16 8 C -0.04 -1.62 5.29 29.10 0.15 -1.46 16 9 C -0.20 -9.13 4.43 -19.41 -0.09 -9.21 16 10 C -0.08 -3.55 9.66 22.22 0.21 -3.34 16 11 C -0.24 -10.44 10.05 22.46 0.23 -10.22 16 12 C -0.11 -5.35 10.02 22.22 0.22 -5.13 16 13 C -0.19 -10.31 8.68 22.73 0.20 -10.11 16 14 C 0.10 5.35 5.56 -21.29 -0.12 5.24 16 15 C -0.49 -25.83 8.14 23.46 0.19 -25.64 16 16 H 0.07 3.54 6.68 -2.91 -0.02 3.52 16 17 C 0.04 2.08 5.16 85.26 0.44 2.52 16 18 N -0.82 -42.94 10.97 21.82 0.24 -42.70 16 19 Si 0.96 39.04 29.59 68.60 2.03 41.07 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 C -0.05 -1.28 5.04 -19.67 -0.10 -1.38 16 24 C -0.15 -3.26 9.44 22.36 0.21 -3.05 16 25 C 0.09 1.86 11.18 84.68 0.95 2.81 16 26 N -0.51 -11.46 10.36 -195.84 -2.03 -13.48 16 27 C 0.09 1.84 11.18 84.68 0.95 2.79 16 28 C -0.17 -3.42 9.80 22.36 0.22 -3.20 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.35 7.80 -2.39 -0.02 1.33 16 31 H 0.03 1.05 6.06 -2.39 -0.01 1.03 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.12 3.71 8.05 -2.39 -0.02 3.69 16 35 H 0.10 3.98 7.06 -2.39 -0.02 3.97 16 36 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 37 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 38 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.10 5.48 6.22 -2.91 -0.02 5.47 16 40 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 41 H 0.15 2.90 7.72 -2.91 -0.02 2.87 16 42 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 43 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -65.15 368.61 6.03 -59.12 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: 1.01 Total: 33.52 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 4.96 Total: -43.54 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -1.79 Total: -56.18 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.18 Total: -33.99 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -65.15 6.03 -59.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839008302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.132 kcal (2) G-P(sol) polarization free energy of solvation -65.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds