Wall clock time and date at job start Tue Mar 31 2020 16:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00228 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99783 * 359.97438 * 7 5 4 10 10 H 1.48489 * 109.47262 * 90.00178 * 9 7 5 11 11 H 1.48509 * 109.46916 * 210.00229 * 9 7 5 12 12 H 1.48493 * 109.47108 * 329.99715 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47288 * 179.97438 * 15 14 13 17 17 S 1.81399 * 109.46958 * 179.97438 * 16 15 14 18 18 O 1.42101 * 108.57982 * 294.48710 * 17 16 15 19 19 O 1.42097 * 108.57805 * 65.51669 * 17 16 15 20 20 C 1.81409 * 101.91912 * 180.02562 * 17 16 15 21 21 C 1.50697 * 109.46944 * 179.97438 * 20 17 16 22 22 C 1.38230 * 119.99973 * 269.72588 * 21 20 17 23 23 C 1.38242 * 119.99619 * 179.76715 * 22 21 20 24 24 C 1.38225 * 120.00032 * 0.50841 * 23 22 21 25 25 C 1.38236 * 120.00365 * 359.74683 * 24 23 22 26 26 C 1.38230 * 119.99580 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 34 34 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 35 35 H 1.00901 * 111.00083 * 303.94749 * 14 13 2 36 36 H 1.09000 * 109.47041 * 300.00315 * 15 14 13 37 37 H 1.09004 * 109.46766 * 59.99797 * 15 14 13 38 38 H 1.08993 * 109.47074 * 300.00164 * 16 15 14 39 39 H 1.09004 * 109.46404 * 60.00223 * 16 15 14 40 40 H 1.08997 * 109.46579 * 300.00132 * 20 17 16 41 41 H 1.09001 * 109.47075 * 60.00169 * 20 17 16 42 42 H 1.08001 * 120.00523 * 0.02562 * 22 21 20 43 43 H 1.08010 * 119.99794 * 180.22993 * 23 22 21 44 44 H 1.08007 * 120.00092 * 179.71960 * 24 23 22 45 45 H 1.07996 * 120.00143 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.00202 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 1.6447 0.2773 4.7994 9 14 2.9634 -1.9883 3.9028 10 1 4.4168 -1.6850 3.8781 11 1 2.6160 -2.6420 5.1903 12 1 2.6287 -2.8994 2.7790 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 6 1.7026 0.1909 -4.8892 17 16 2.2891 -0.6286 -6.3975 18 8 3.7099 -0.6039 -6.4030 19 8 1.6164 -1.8735 -6.5272 20 6 1.6872 0.4918 -7.6910 21 6 2.0901 -0.0389 -9.0427 22 6 3.2945 0.3421 -9.6038 23 6 3.6663 -0.1486 -10.8416 24 6 2.8288 -1.0119 -11.5228 25 6 1.6219 -1.3887 -10.9640 26 6 1.2528 -0.9026 -9.7237 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 1.8926 -0.0452 5.6800 33 1 3.1264 -0.7995 -1.2055 34 1 1.6055 -1.7198 -1.2951 35 1 0.6530 0.1793 -2.4754 36 1 3.2128 -0.7038 -3.6399 37 1 1.6922 -1.6246 -3.7300 38 1 0.6157 0.2678 -4.9162 39 1 2.1361 1.1891 -4.8264 40 1 0.6007 0.5598 -7.6359 41 1 2.1210 1.4811 -7.5455 42 1 3.9471 1.0198 -9.0734 43 1 4.6091 0.1462 -11.2784 44 1 3.1171 -1.3917 -12.4918 45 1 0.9674 -2.0629 -11.4964 46 1 0.3096 -1.1967 -9.2872 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876986864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:27 Heat of formation + Delta-G solvation = -59.644774 kcal Electronic energy + Delta-G solvation = -24239.735006 eV Core-core repulsion = 20642.069663 eV Total energy + Delta-G solvation = -3597.665344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.72621 -37.42389 -37.27932 -36.30964 -34.68681 -33.57061 -32.30487 -31.38338 -30.37957 -27.98993 -27.38781 -25.43260 -23.12268 -23.09412 -21.99262 -21.74617 -19.26586 -19.01291 -17.44420 -17.22744 -16.93765 -16.66448 -16.26635 -15.92497 -15.52412 -15.44076 -14.67948 -14.47756 -14.00105 -13.90797 -13.81366 -13.77362 -13.27830 -13.20432 -12.92253 -12.85425 -12.36078 -12.31349 -12.27724 -12.01970 -11.86239 -11.77255 -11.64372 -11.51091 -11.46800 -11.01943 -10.98273 -10.71054 -10.43270 -9.93082 -9.68221 -9.49480 -9.40325 -9.18428 -9.07451 -8.51830 -8.40535 -6.02216 -3.99417 -0.52652 0.87257 0.92453 2.37619 3.15267 3.32222 3.33472 3.39685 3.43218 3.59618 3.90545 4.15260 4.19798 4.40958 4.47049 4.52148 4.53312 4.65208 4.65584 4.87567 4.99694 5.09409 5.10969 5.31065 5.31492 5.45206 5.46016 5.55314 5.60984 5.64807 5.89646 5.95405 5.98077 6.03901 6.09333 6.30678 6.40645 6.47638 6.70056 6.93316 7.01142 7.09735 7.27890 7.39129 7.50549 7.81992 8.56550 9.02913 9.60641 11.11091 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.038306 B = 0.001829 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.786643 B =15306.503215 C =15492.904987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 H 0.073 0.927 4 C -0.009 4.009 5 C -0.514 4.514 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.056 3.944 14 N -0.681 5.681 15 C 0.068 3.932 16 C -0.610 4.610 17 S 2.415 3.585 18 O -0.928 6.928 19 O -0.931 6.931 20 C -0.568 4.568 21 C -0.092 4.092 22 C -0.102 4.102 23 C -0.119 4.119 24 C -0.111 4.111 25 C -0.119 4.119 26 C -0.103 4.103 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.342 0.658 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 0.102 -34.192 34.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.095 4.095 3 H 0.091 0.909 4 C -0.047 4.047 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.072 4.072 14 N -0.314 5.314 15 C -0.063 4.063 16 C -0.740 4.740 17 S 2.597 3.403 18 O -0.925 6.925 19 O -0.928 6.928 20 C -0.695 4.695 21 C -0.094 4.094 22 C -0.121 4.121 23 C -0.137 4.137 24 C -0.130 4.130 25 C -0.137 4.137 26 C -0.122 4.122 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.161 0.839 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.194 -0.254 -34.015 34.016 hybrid contribution -0.632 -0.687 0.318 0.986 sum -0.438 -0.940 -33.697 33.713 Atomic orbital electron populations 1.21764 0.96164 1.00627 1.00853 1.21042 0.95295 1.00253 0.92890 0.90900 1.19611 0.95700 0.96083 0.93321 1.21119 1.35444 1.09533 0.89087 0.90824 1.25026 0.95684 0.96922 0.95954 1.69911 1.47148 1.39316 0.98015 0.86802 0.80683 0.84463 0.77453 1.20333 1.21487 1.19107 1.22266 1.00771 0.94730 0.89452 1.60588 1.19959 1.50136 1.00683 1.21582 1.01875 0.94440 0.88425 1.30426 1.12707 1.14111 1.16726 1.08378 0.76457 0.77444 0.78035 1.93598 1.26723 1.86557 1.85658 1.93591 1.76399 1.37610 1.85243 1.29360 1.13136 1.16485 1.10513 1.18920 0.96225 0.99978 0.94242 1.21202 0.95544 0.99594 0.95762 1.21205 0.99932 0.97637 0.94930 1.21303 0.94338 0.97308 1.00039 1.21196 0.97051 0.99960 0.95525 1.21190 0.99617 0.96355 0.95006 0.94763 0.93957 0.91190 0.96711 0.97008 0.92816 0.91039 0.95301 0.83875 0.89392 0.93714 0.85023 0.83906 0.83973 0.83849 0.85080 0.85350 0.85585 0.85379 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.77 37.16 0.33 -2.11 16 2 C -0.08 -1.47 2.55 -90.62 -0.23 -1.70 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 4 C -0.01 -0.22 3.52 -27.89 -0.10 -0.32 16 5 C -0.51 -14.45 8.96 -34.44 -0.31 -14.76 16 6 H 0.07 2.21 7.30 -52.48 -0.38 1.83 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 9 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.06 0.91 5.14 -3.82 -0.02 0.89 16 14 N -0.68 -9.14 6.50 -113.78 -0.74 -9.88 16 15 C 0.07 0.77 5.69 -3.82 -0.02 0.75 16 16 C -0.61 -4.55 6.07 37.16 0.23 -4.32 16 17 S 2.41 20.88 4.70 -107.50 -0.51 20.37 16 18 O -0.93 -11.29 18.10 -57.83 -1.05 -12.33 16 19 O -0.93 -11.17 18.10 -57.83 -1.05 -12.21 16 20 C -0.57 -3.10 5.94 36.00 0.21 -2.89 16 21 C -0.09 -0.74 5.14 -104.63 -0.54 -1.27 16 22 C -0.10 -0.80 9.70 -39.58 -0.38 -1.18 16 23 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 24 C -0.11 -0.73 10.05 -39.59 -0.40 -1.13 16 25 C -0.12 -0.83 10.05 -39.59 -0.40 -1.23 16 26 C -0.10 -0.80 9.70 -39.58 -0.38 -1.18 16 27 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 30 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 31 H 0.01 0.28 7.57 -51.92 -0.39 -0.12 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.34 4.14 6.98 -39.29 -0.27 3.86 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.14 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.14 0.39 8.09 -51.93 -0.42 -0.03 16 41 H 0.14 0.42 8.08 -51.92 -0.42 0.00 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 45 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 388.94 15.07 5.86 5.86 Total: -1.00 -36.94 388.94 -11.52 -48.46 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.63 Total: -0.47 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: -2.51 Total: -29.88 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.03 Total: -36.99 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -2.09 Total: -24.55 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: 20.88 SS G_CDS: -0.51 Total: 20.37 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.94 -11.52 -48.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876986864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.184 kcal (2) G-P(sol) polarization free energy of solvation -36.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds