Wall clock time and date at job start Tue Mar 31 2020 16:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00228 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99783 * 359.97438 * 7 5 4 10 10 H 1.48489 * 109.47262 * 90.00178 * 9 7 5 11 11 H 1.48509 * 109.46916 * 210.00229 * 9 7 5 12 12 H 1.48493 * 109.47108 * 329.99715 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47288 * 179.97438 * 15 14 13 17 17 S 1.81399 * 109.46958 * 179.97438 * 16 15 14 18 18 O 1.42101 * 108.57982 * 294.48710 * 17 16 15 19 19 O 1.42097 * 108.57805 * 65.51669 * 17 16 15 20 20 C 1.81409 * 101.91912 * 180.02562 * 17 16 15 21 21 C 1.50697 * 109.46944 * 179.97438 * 20 17 16 22 22 C 1.38230 * 119.99973 * 269.72588 * 21 20 17 23 23 C 1.38242 * 119.99619 * 179.76715 * 22 21 20 24 24 C 1.38225 * 120.00032 * 0.50841 * 23 22 21 25 25 C 1.38236 * 120.00365 * 359.74683 * 24 23 22 26 26 C 1.38230 * 119.99580 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 34 34 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 35 35 H 1.00901 * 111.00083 * 303.94749 * 14 13 2 36 36 H 1.09000 * 109.47041 * 300.00315 * 15 14 13 37 37 H 1.09004 * 109.46766 * 59.99797 * 15 14 13 38 38 H 1.08993 * 109.47074 * 300.00164 * 16 15 14 39 39 H 1.09004 * 109.46404 * 60.00223 * 16 15 14 40 40 H 1.08997 * 109.46579 * 300.00132 * 20 17 16 41 41 H 1.09001 * 109.47075 * 60.00169 * 20 17 16 42 42 H 1.08001 * 120.00523 * 0.02562 * 22 21 20 43 43 H 1.08010 * 119.99794 * 180.22993 * 23 22 21 44 44 H 1.08007 * 120.00092 * 179.71960 * 24 23 22 45 45 H 1.07996 * 120.00143 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.00202 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 1.6447 0.2773 4.7994 9 14 2.9634 -1.9883 3.9028 10 1 4.4168 -1.6850 3.8781 11 1 2.6160 -2.6420 5.1903 12 1 2.6287 -2.8994 2.7790 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 6 1.7026 0.1909 -4.8892 17 16 2.2891 -0.6286 -6.3975 18 8 3.7099 -0.6039 -6.4030 19 8 1.6164 -1.8735 -6.5272 20 6 1.6872 0.4918 -7.6910 21 6 2.0901 -0.0389 -9.0427 22 6 3.2945 0.3421 -9.6038 23 6 3.6663 -0.1486 -10.8416 24 6 2.8288 -1.0119 -11.5228 25 6 1.6219 -1.3887 -10.9640 26 6 1.2528 -0.9026 -9.7237 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 1.8926 -0.0452 5.6800 33 1 3.1264 -0.7995 -1.2055 34 1 1.6055 -1.7198 -1.2951 35 1 0.6530 0.1793 -2.4754 36 1 3.2128 -0.7038 -3.6399 37 1 1.6922 -1.6246 -3.7300 38 1 0.6157 0.2678 -4.9162 39 1 2.1361 1.1891 -4.8264 40 1 0.6007 0.5598 -7.6359 41 1 2.1210 1.4811 -7.5455 42 1 3.9471 1.0198 -9.0734 43 1 4.6091 0.1462 -11.2784 44 1 3.1171 -1.3917 -12.4918 45 1 0.9674 -2.0629 -11.4964 46 1 0.3096 -1.1967 -9.2872 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876986864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:25 Heat of formation + Delta-G solvation = -86.192293 kcal Electronic energy + Delta-G solvation = -24240.886193 eV Core-core repulsion = 20642.069663 eV Total energy + Delta-G solvation = -3598.816530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.19419 -38.68130 -38.03299 -37.06882 -36.09664 -34.26885 -34.03185 -31.86175 -31.53738 -29.23174 -28.41775 -26.79788 -24.35407 -23.58154 -23.32248 -22.39314 -20.69383 -19.85288 -18.97093 -17.98286 -17.83928 -17.48138 -17.00642 -16.75102 -16.40532 -16.05662 -16.01125 -15.69246 -15.38541 -15.04587 -14.70917 -14.36392 -14.26401 -14.04419 -13.87675 -13.80235 -13.59551 -13.54222 -13.15320 -13.11347 -13.05739 -12.85353 -12.61556 -12.34783 -12.32996 -12.12502 -12.07746 -11.96174 -11.78987 -11.66383 -11.46145 -11.16873 -11.04443 -10.73554 -9.90882 -9.69061 -9.47268 -8.26257 -6.28359 -1.14787 0.37662 0.41937 1.35958 1.37061 1.48653 1.80822 2.37270 2.54235 2.82111 3.04708 3.09039 3.23930 3.46594 3.61823 3.75277 3.89023 4.09079 4.16967 4.17691 4.21623 4.24789 4.36905 4.40332 4.52741 4.54926 4.59647 4.65401 4.70564 4.80489 4.86341 4.98010 5.01897 5.05883 5.08865 5.28814 5.36967 5.47232 5.47700 5.53878 5.55411 5.68132 5.72521 5.95864 6.01354 6.33769 6.43391 6.79092 7.35205 8.90250 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.038306 B = 0.001829 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.786643 B =15306.503215 C =15492.904987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 H 0.057 0.943 4 C -0.009 4.009 5 C -0.518 4.518 6 H 0.037 0.963 7 C 0.002 3.998 8 N -0.952 5.952 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.248 1.248 13 C 0.065 3.935 14 N -0.681 5.681 15 C 0.055 3.945 16 C -0.599 4.599 17 S 2.412 3.588 18 O -0.975 6.975 19 O -0.974 6.974 20 C -0.547 4.547 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.119 4.119 25 C -0.132 4.132 26 C -0.121 4.121 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.352 0.648 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.140 0.860 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -0.233 -36.582 36.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.047 4.047 5 C -0.556 4.556 6 H 0.055 0.945 7 C -0.195 4.195 8 N -0.594 5.594 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.172 1.172 13 C -0.064 4.064 14 N -0.315 5.315 15 C -0.075 4.075 16 C -0.729 4.729 17 S 2.600 3.400 18 O -0.972 6.972 19 O -0.971 6.971 20 C -0.677 4.677 21 C -0.115 4.115 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.137 4.137 25 C -0.150 4.150 26 C -0.141 4.141 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.172 0.828 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.182 0.818 39 H 0.183 0.817 40 H 0.193 0.807 41 H 0.192 0.808 42 H 0.158 0.842 43 H 0.163 0.837 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.086 -0.617 -36.410 36.415 hybrid contribution -0.597 -0.471 0.972 1.234 sum -0.683 -1.088 -35.438 35.461 Atomic orbital electron populations 1.21688 0.95050 1.01089 1.01022 1.20899 0.96252 0.99178 0.92772 0.92446 1.19583 0.95854 0.95880 0.93361 1.21449 1.34351 1.08674 0.91151 0.94472 1.25975 0.97053 1.00819 0.95604 1.70065 1.49061 1.41554 0.98686 0.85718 0.79217 0.80079 0.77974 1.19435 1.21162 1.17189 1.22014 1.00508 0.94764 0.89148 1.60494 1.20724 1.49841 1.00399 1.21689 1.01582 0.95260 0.89000 1.30301 1.14935 1.14054 1.13584 1.08139 0.75310 0.77559 0.78955 1.93539 1.29614 1.87427 1.86605 1.93534 1.76636 1.40842 1.86124 1.29202 1.15286 1.16130 1.07087 1.19235 0.96489 1.00471 0.95326 1.21517 0.95948 1.00215 0.96419 1.21543 1.00808 0.97668 0.94969 1.21644 0.94159 0.96972 1.00927 1.21542 0.97605 1.00181 0.95631 1.21515 1.00349 0.96590 0.95598 0.91123 0.93293 0.94497 0.96396 0.96758 0.92695 0.91384 0.94645 0.82824 0.90267 0.93690 0.81774 0.81748 0.80678 0.80827 0.84183 0.83675 0.83486 0.83617 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 8.77 71.98 0.63 -3.90 16 2 C -0.07 -2.72 2.55 -10.79 -0.03 -2.75 16 3 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.01 -0.41 3.52 29.85 0.10 -0.31 16 5 C -0.52 -29.76 8.96 25.60 0.23 -29.54 16 6 H 0.04 2.34 7.30 -2.91 -0.02 2.32 16 7 C 0.00 0.10 5.47 84.65 0.46 0.56 16 8 N -0.95 -60.22 13.96 21.44 0.30 -59.92 16 9 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 13 C 0.06 1.97 5.14 86.30 0.44 2.42 16 14 N -0.68 -16.51 6.50 -513.88 -3.34 -19.85 16 15 C 0.06 1.14 5.69 86.30 0.49 1.63 16 16 C -0.60 -7.02 6.07 71.98 0.44 -6.59 16 17 S 2.41 38.01 4.70 -56.49 -0.27 37.74 16 18 O -0.97 -23.44 18.10 -127.37 -2.30 -25.75 16 19 O -0.97 -22.71 18.10 -127.37 -2.31 -25.01 16 20 C -0.55 -4.33 5.94 71.23 0.42 -3.90 16 21 C -0.11 -1.62 5.14 -19.87 -0.10 -1.72 16 22 C -0.12 -1.77 9.70 22.27 0.22 -1.55 16 23 C -0.13 -1.70 10.05 22.27 0.22 -1.47 16 24 C -0.12 -1.40 10.05 22.27 0.22 -1.17 16 25 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 26 C -0.12 -1.72 9.70 22.27 0.22 -1.51 16 27 H 0.07 1.89 6.68 -2.39 -0.02 1.87 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 30 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 31 H 0.01 0.65 7.57 -2.38 -0.02 0.63 16 32 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.35 7.29 6.98 -89.69 -0.63 6.66 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.18 0.22 8.09 -2.39 -0.02 0.20 16 41 H 0.17 0.32 8.08 -2.39 -0.02 0.30 16 42 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 44 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16 45 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 46 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -83.01 388.94 -1.57 -84.58 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.27 Total: 12.61 kcal Atomic # 6 Polarization: -55.44 SS G_CDS: 4.20 Total: -51.24 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -3.04 Total: -79.76 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -4.61 Total: -50.76 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Atomic # 16 Polarization: 38.01 SS G_CDS: -0.27 Total: 37.74 kcal Total: -83.01 -1.57 -84.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876986864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.615 kcal (2) G-P(sol) polarization free energy of solvation -83.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds