Wall clock time and date at job start Tue Mar 31 2020 16:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47032 * 179.97438 * 15 14 13 17 17 S 1.81402 * 109.47028 * 179.97438 * 16 15 14 18 18 O 1.42094 * 108.58075 * 294.49044 * 17 16 15 19 19 O 1.42097 * 108.57932 * 65.51727 * 17 16 15 20 20 C 1.81397 * 101.92013 * 180.02562 * 17 16 15 21 21 C 1.50701 * 109.47090 * 180.02562 * 20 17 16 22 22 C 1.38233 * 119.99972 * 269.72312 * 21 20 17 23 23 C 1.38242 * 119.99909 * 179.76095 * 22 21 20 24 24 C 1.38227 * 119.99989 * 0.51659 * 23 22 21 25 25 C 1.38241 * 119.99955 * 359.74191 * 24 23 22 26 26 C 1.38226 * 120.00062 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 28 28 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 29 29 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 31 31 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 32 32 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 33 33 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 34 34 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 35 35 H 1.00901 * 111.00285 * 56.04255 * 14 13 2 36 36 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 37 37 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 38 38 H 1.08999 * 109.47278 * 300.00268 * 16 15 14 39 39 H 1.09002 * 109.46933 * 60.00308 * 16 15 14 40 40 H 1.09008 * 109.47354 * 299.99980 * 20 17 16 41 41 H 1.08996 * 109.47548 * 60.00176 * 20 17 16 42 42 H 1.08004 * 120.00033 * 0.02562 * 22 21 20 43 43 H 1.07998 * 119.99447 * 180.22969 * 23 22 21 44 44 H 1.07999 * 120.00086 * 179.72080 * 24 23 22 45 45 H 1.08005 * 119.99815 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.00288 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 1.9987 -0.1340 -6.4619 11 1 0.0184 0.6649 -5.3125 12 1 2.0863 1.9251 -5.1840 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7035 0.1914 4.8891 17 16 2.2886 -0.6290 6.3975 18 8 1.6142 -1.8730 6.5271 19 8 3.7094 -0.6062 6.4033 20 6 1.6869 0.4915 7.6909 21 6 2.0887 -0.0399 9.0427 22 6 1.2476 -0.8983 9.7258 23 6 1.6184 -1.3896 10.9636 24 6 2.8254 -1.0141 11.5230 25 6 3.6641 -0.1514 10.8422 26 6 3.2960 0.3352 9.6019 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 1.6053 -1.7198 -1.2952 31 1 3.1262 -0.7995 -1.2056 32 1 2.9362 -2.0177 -3.0611 33 1 1.6053 -1.7199 1.2950 34 1 3.1263 -0.7996 1.2055 35 1 0.6529 0.1793 2.4753 36 1 1.6921 -1.6248 3.7300 37 1 3.2127 -0.7039 3.6399 38 1 2.1375 1.1892 4.8260 39 1 0.6166 0.2689 4.9165 40 1 2.1214 1.4806 7.5459 41 1 0.6005 0.5603 7.6355 42 1 0.3027 -1.1885 9.2905 43 1 0.9630 -2.0632 11.4956 44 1 3.1131 -1.3944 12.4920 45 1 4.6070 0.1423 11.2795 46 1 3.9510 1.0096 9.0702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876986865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:42 Heat of formation + Delta-G solvation = -67.053816 kcal Electronic energy + Delta-G solvation = -24220.823635 eV Core-core repulsion = 20622.837011 eV Total energy + Delta-G solvation = -3597.986624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 4.78 seconds Orbital eigenvalues (eV) -39.72326 -37.41541 -37.27515 -36.30542 -34.76875 -33.56860 -32.46834 -31.38083 -30.18089 -27.95402 -26.55365 -25.33961 -23.16209 -23.09118 -22.24879 -21.81523 -19.38504 -19.11133 -17.43754 -17.23512 -16.85656 -16.63452 -16.28806 -15.94745 -15.51551 -15.45522 -14.65853 -14.29421 -13.90772 -13.87639 -13.80275 -13.69453 -13.27750 -13.20497 -13.16799 -12.86352 -12.35510 -12.27459 -12.24571 -11.85988 -11.79907 -11.68976 -11.50877 -11.46738 -11.37535 -11.06153 -10.97655 -10.70539 -10.26078 -10.08187 -9.88678 -9.48467 -9.40058 -9.18345 -8.49580 -8.39291 -8.29392 -6.32176 -4.00629 -0.52389 0.87513 0.92744 2.38011 3.15671 3.33795 3.45190 3.47303 3.59731 3.65909 3.90707 4.15266 4.20125 4.41230 4.51878 4.53565 4.58414 4.65479 4.65974 4.87439 4.99970 5.09751 5.11222 5.32316 5.43678 5.45934 5.46746 5.55587 5.62517 5.66842 5.89896 5.95685 5.98322 6.04162 6.10376 6.30315 6.40791 6.47907 6.73242 6.97490 6.99044 7.11637 7.40540 7.42098 7.59147 8.25975 8.50042 8.92425 9.70951 11.08203 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.045939 B = 0.001739 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.355933 B =16095.810696 C =16186.463527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 H 0.068 0.932 4 C 0.014 3.986 5 C -0.595 4.595 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.915 5.915 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.058 3.942 14 N -0.681 5.681 15 C 0.067 3.933 16 C -0.610 4.610 17 S 2.415 3.585 18 O -0.931 6.931 19 O -0.928 6.928 20 C -0.568 4.568 21 C -0.092 4.092 22 C -0.103 4.103 23 C -0.119 4.119 24 C -0.111 4.111 25 C -0.119 4.119 26 C -0.102 4.102 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.268 0.732 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.341 0.659 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.142 0.858 39 H 0.131 0.869 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 4.412 32.167 32.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 H 0.086 0.914 4 C -0.024 4.024 5 C -0.634 4.634 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.551 5.551 9 Si 0.897 3.103 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.070 4.070 14 N -0.314 5.314 15 C -0.063 4.063 16 C -0.740 4.740 17 S 2.597 3.403 18 O -0.928 6.928 19 O -0.925 6.925 20 C -0.695 4.695 21 C -0.094 4.094 22 C -0.122 4.122 23 C -0.137 4.137 24 C -0.130 4.130 25 C -0.137 4.137 26 C -0.121 4.121 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.160 0.840 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.189 4.070 30.529 30.876 hybrid contribution -1.262 0.110 1.675 2.100 sum -3.451 4.180 32.203 32.656 Atomic orbital electron populations 1.21745 0.96410 1.00543 1.00479 1.21095 0.95067 1.00081 0.93402 0.91365 1.19248 0.95463 0.95461 0.92185 1.22020 1.38847 1.10239 0.92245 0.93203 1.25834 0.94705 0.97171 1.01402 1.70780 1.35802 1.15009 1.33523 0.83557 0.75975 0.75166 0.75651 1.20847 1.21544 1.21488 1.22249 1.00755 0.94690 0.89344 1.60598 1.19843 1.50199 1.00740 1.21582 1.01903 0.94445 0.88400 1.30429 1.12667 1.14093 1.16774 1.08377 0.76459 0.77450 0.78018 1.93591 1.76338 1.37657 1.85231 1.93598 1.26714 1.86537 1.85648 1.29363 1.13134 1.16477 1.10533 1.18921 0.96164 1.00064 0.94221 1.21191 0.99605 0.96343 0.95021 1.21198 0.97049 0.99922 0.95558 1.21305 0.94348 0.97283 1.00044 1.21204 0.99942 0.97662 0.94887 1.21201 0.95545 0.99617 0.95754 0.94859 0.91586 0.93991 0.97593 0.97483 0.92161 0.95359 0.91091 0.83995 0.93693 0.89387 0.83936 0.85065 0.83861 0.83977 0.85160 0.85371 0.85573 0.85341 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.77 37.16 0.33 -2.15 16 2 C -0.08 -1.58 2.55 -90.62 -0.23 -1.81 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 5 C -0.60 -16.84 8.41 -34.44 -0.29 -17.13 16 6 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 8 N -0.91 -28.29 13.65 55.43 0.76 -27.53 16 9 Si 1.07 25.45 29.90 -169.99 -5.08 20.37 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.06 1.00 5.14 -3.83 -0.02 0.98 16 14 N -0.68 -9.62 6.50 -113.78 -0.74 -10.36 16 15 C 0.07 0.81 5.69 -3.82 -0.02 0.79 16 16 C -0.61 -4.80 6.07 37.16 0.23 -4.58 16 17 S 2.41 21.74 4.70 -107.50 -0.51 21.24 16 18 O -0.93 -11.51 18.10 -57.83 -1.05 -12.56 16 19 O -0.93 -11.62 18.10 -57.83 -1.05 -12.67 16 20 C -0.57 -3.23 5.93 36.01 0.21 -3.02 16 21 C -0.09 -0.76 5.14 -104.62 -0.54 -1.29 16 22 C -0.10 -0.82 9.70 -39.58 -0.38 -1.20 16 23 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16 24 C -0.11 -0.74 10.05 -39.58 -0.40 -1.14 16 25 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 26 C -0.10 -0.82 9.70 -39.58 -0.38 -1.20 16 27 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 28 H 0.07 1.33 6.95 -51.93 -0.36 0.97 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 31 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 32 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.34 4.34 6.98 -39.29 -0.27 4.07 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.14 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.13 0.70 8.14 -51.92 -0.42 0.27 16 40 H 0.14 0.45 8.09 -51.92 -0.42 0.03 16 41 H 0.14 0.42 8.08 -51.93 -0.42 0.00 16 42 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 46 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 391.23 15.07 5.90 5.90 Total: -1.00 -37.31 391.23 -11.88 -49.19 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.61 Total: 0.16 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: -2.50 Total: -33.74 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.02 Total: -37.89 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -2.09 Total: -25.22 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Atomic # 16 Polarization: 21.74 SS G_CDS: -0.51 Total: 21.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.31 -11.88 -49.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876986865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.864 kcal (2) G-P(sol) polarization free energy of solvation -37.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.78 seconds