Wall clock time and date at job start Tue Mar 31 2020 16:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47032 * 179.97438 * 15 14 13 17 17 S 1.81402 * 109.47028 * 179.97438 * 16 15 14 18 18 O 1.42094 * 108.58075 * 294.49044 * 17 16 15 19 19 O 1.42097 * 108.57932 * 65.51727 * 17 16 15 20 20 C 1.81397 * 101.92013 * 180.02562 * 17 16 15 21 21 C 1.50701 * 109.47090 * 180.02562 * 20 17 16 22 22 C 1.38233 * 119.99972 * 269.72312 * 21 20 17 23 23 C 1.38242 * 119.99909 * 179.76095 * 22 21 20 24 24 C 1.38227 * 119.99989 * 0.51659 * 23 22 21 25 25 C 1.38241 * 119.99955 * 359.74191 * 24 23 22 26 26 C 1.38226 * 120.00062 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 28 28 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 29 29 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 31 31 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 32 32 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 33 33 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 34 34 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 35 35 H 1.00901 * 111.00285 * 56.04255 * 14 13 2 36 36 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 37 37 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 38 38 H 1.08999 * 109.47278 * 300.00268 * 16 15 14 39 39 H 1.09002 * 109.46933 * 60.00308 * 16 15 14 40 40 H 1.09008 * 109.47354 * 299.99980 * 20 17 16 41 41 H 1.08996 * 109.47548 * 60.00176 * 20 17 16 42 42 H 1.08004 * 120.00033 * 0.02562 * 22 21 20 43 43 H 1.07998 * 119.99447 * 180.22969 * 23 22 21 44 44 H 1.07999 * 120.00086 * 179.72080 * 24 23 22 45 45 H 1.08005 * 119.99815 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.00288 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 1.9987 -0.1340 -6.4619 11 1 0.0184 0.6649 -5.3125 12 1 2.0863 1.9251 -5.1840 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7035 0.1914 4.8891 17 16 2.2886 -0.6290 6.3975 18 8 1.6142 -1.8730 6.5271 19 8 3.7094 -0.6062 6.4033 20 6 1.6869 0.4915 7.6909 21 6 2.0887 -0.0399 9.0427 22 6 1.2476 -0.8983 9.7258 23 6 1.6184 -1.3896 10.9636 24 6 2.8254 -1.0141 11.5230 25 6 3.6641 -0.1514 10.8422 26 6 3.2960 0.3352 9.6019 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 1.6053 -1.7198 -1.2952 31 1 3.1262 -0.7995 -1.2056 32 1 2.9362 -2.0177 -3.0611 33 1 1.6053 -1.7199 1.2950 34 1 3.1263 -0.7996 1.2055 35 1 0.6529 0.1793 2.4753 36 1 1.6921 -1.6248 3.7300 37 1 3.2127 -0.7039 3.6399 38 1 2.1375 1.1892 4.8260 39 1 0.6166 0.2689 4.9165 40 1 2.1214 1.4806 7.5459 41 1 0.6005 0.5603 7.6355 42 1 0.3027 -1.1885 9.2905 43 1 0.9630 -2.0632 11.4956 44 1 3.1131 -1.3944 12.4920 45 1 4.6070 0.1423 11.2795 46 1 3.9510 1.0096 9.0702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876986865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:36 Heat of formation + Delta-G solvation = -93.361340 kcal Electronic energy + Delta-G solvation = -24221.964415 eV Core-core repulsion = 20622.837011 eV Total energy + Delta-G solvation = -3599.127404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -40.20908 -38.78425 -38.06774 -37.10498 -36.32936 -34.32777 -34.05080 -31.87618 -31.35352 -28.56202 -28.35063 -26.83771 -24.72538 -23.59593 -23.55032 -22.41912 -20.97738 -19.88340 -18.90394 -18.02008 -17.86493 -17.54829 -17.07117 -16.80132 -16.11907 -16.07442 -15.94454 -15.60584 -15.53181 -15.21325 -14.83474 -14.37813 -14.28273 -14.05718 -13.82284 -13.69836 -13.61672 -13.49786 -13.16885 -13.09264 -13.05101 -12.94055 -12.60546 -12.44676 -12.34803 -12.12913 -11.98501 -11.97579 -11.92336 -11.62785 -11.59437 -11.29621 -10.58176 -10.52124 -9.92281 -9.70792 -9.57256 -8.65465 -6.34837 -1.18328 0.36128 0.40574 1.52960 1.61777 1.77579 1.80544 2.50313 2.58717 2.80449 3.01293 3.16959 3.18779 3.43859 3.56025 3.72161 3.84553 4.07029 4.07655 4.10770 4.18305 4.23517 4.29871 4.33183 4.50727 4.53290 4.53493 4.59960 4.63814 4.72155 4.79890 4.88724 5.00245 5.01477 5.07472 5.22163 5.30118 5.45658 5.46219 5.46306 5.54029 5.60398 5.83211 5.99930 6.06187 6.21921 6.36022 6.61273 7.46620 8.75023 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.045939 B = 0.001739 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.355933 B =16095.810696 C =16186.463527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 H 0.060 0.940 4 C 0.014 3.986 5 C -0.605 4.605 6 H 0.055 0.945 7 C -0.045 4.045 8 N -0.942 5.942 9 Si 1.118 2.882 10 H -0.287 1.287 11 H -0.267 1.267 12 H -0.269 1.269 13 C 0.067 3.933 14 N -0.676 5.676 15 C 0.054 3.946 16 C -0.598 4.598 17 S 2.410 3.590 18 O -0.975 6.975 19 O -0.975 6.975 20 C -0.545 4.545 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.132 4.132 24 C -0.118 4.118 25 C -0.132 4.132 26 C -0.122 4.122 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.039 0.961 30 H -0.014 1.014 31 H -0.018 1.018 32 H 0.253 0.747 33 H 0.027 0.973 34 H 0.058 0.942 35 H 0.353 0.647 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.175 0.825 41 H 0.177 0.823 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.134 6.644 33.661 34.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.089 4.089 3 H 0.079 0.921 4 C -0.024 4.024 5 C -0.643 4.643 6 H 0.073 0.927 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.939 3.061 10 H -0.212 1.212 11 H -0.192 1.192 12 H -0.194 1.194 13 C -0.062 4.062 14 N -0.310 5.310 15 C -0.076 4.076 16 C -0.728 4.728 17 S 2.599 3.401 18 O -0.972 6.972 19 O -0.972 6.972 20 C -0.675 4.675 21 C -0.116 4.116 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.137 4.137 25 C -0.150 4.150 26 C -0.141 4.141 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.004 0.996 31 H 0.000 1.000 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.173 0.827 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.184 0.816 39 H 0.184 0.816 40 H 0.193 0.807 41 H 0.194 0.806 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.164 0.836 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.023 6.278 32.034 32.891 hybrid contribution -0.678 -0.582 1.346 1.616 sum -4.701 5.696 33.380 34.187 Atomic orbital electron populations 1.21669 0.94497 1.00796 1.01561 1.20912 0.96603 0.98985 0.92389 0.92138 1.19207 0.93867 0.94874 0.94424 1.22439 1.38154 1.10415 0.93293 0.92664 1.27449 0.94053 0.97293 1.05340 1.70921 1.37889 1.16409 1.32789 0.82932 0.76987 0.74502 0.71704 1.21214 1.19246 1.19434 1.21961 0.99961 0.94623 0.89682 1.60494 1.20717 1.49592 1.00180 1.21688 1.01479 0.95301 0.89147 1.30298 1.15024 1.14022 1.13425 1.08193 0.75319 0.77636 0.78998 1.93533 1.76572 1.40983 1.86122 1.93538 1.29662 1.87436 1.86611 1.29186 1.15339 1.16033 1.06942 1.19234 0.96448 1.00606 0.95291 1.21518 1.00344 0.96546 0.95610 1.21548 0.97616 1.00142 0.95664 1.21650 0.94153 0.96916 1.00938 1.21544 1.00825 0.97691 0.94920 1.21518 0.95939 1.00233 0.96420 0.90725 0.93503 0.94148 0.99569 0.99965 0.93764 0.95438 0.92297 0.82702 0.93877 0.90515 0.81598 0.81621 0.80719 0.80564 0.84058 0.83591 0.83445 0.83649 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 8.77 71.98 0.63 -3.88 16 2 C -0.07 -2.83 2.55 -10.79 -0.03 -2.86 16 3 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 4 C 0.01 0.73 3.76 29.85 0.11 0.84 16 5 C -0.61 -34.59 8.41 25.60 0.22 -34.38 16 6 H 0.06 3.04 7.06 -2.91 -0.02 3.02 16 7 C -0.04 -2.63 5.46 84.65 0.46 -2.17 16 8 N -0.94 -59.74 13.65 21.45 0.29 -59.45 16 9 Si 1.12 50.75 29.90 68.60 2.05 52.80 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 C 0.07 2.30 5.14 86.30 0.44 2.74 16 14 N -0.68 -17.73 6.50 -513.90 -3.34 -21.07 16 15 C 0.05 1.23 5.69 86.30 0.49 1.72 16 16 C -0.60 -7.64 6.07 71.98 0.44 -7.21 16 17 S 2.41 40.46 4.70 -56.49 -0.27 40.19 16 18 O -0.98 -23.88 18.10 -127.37 -2.30 -26.18 16 19 O -0.98 -24.61 18.10 -127.37 -2.31 -26.92 16 20 C -0.55 -4.55 5.93 71.24 0.42 -4.13 16 21 C -0.11 -1.68 5.14 -19.86 -0.10 -1.78 16 22 C -0.12 -1.77 9.70 22.27 0.22 -1.55 16 23 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 24 C -0.12 -1.43 10.05 22.27 0.22 -1.21 16 25 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 26 C -0.12 -1.82 9.70 22.27 0.22 -1.61 16 27 H 0.07 2.00 6.68 -2.39 -0.02 1.98 16 28 H 0.05 1.82 6.95 -2.39 -0.02 1.80 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H -0.01 -0.78 8.01 -2.39 -0.02 -0.80 16 31 H -0.02 -1.02 8.00 -2.39 -0.02 -1.04 16 32 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16 33 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.35 7.77 6.98 -89.69 -0.63 7.14 16 36 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.17 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.18 0.37 8.09 -2.39 -0.02 0.35 16 41 H 0.18 0.27 8.08 -2.39 -0.02 0.25 16 42 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 44 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 45 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 46 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -84.16 391.23 -1.26 -85.42 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.42 Total: 13.67 kcal Atomic # 6 Polarization: -62.66 SS G_CDS: 4.19 Total: -58.47 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.05 Total: -80.52 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -4.61 Total: -53.10 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.05 Total: 52.80 kcal Atomic # 16 Polarization: 40.46 SS G_CDS: -0.27 Total: 40.19 kcal Total: -84.16 -1.26 -85.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876986865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.939 kcal (2) G-P(sol) polarization free energy of solvation -84.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds