Wall clock time and date at job start Tue Mar 31 2020 16:47:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53000 * 109.47279 * 2 1
4 4 C 1.52998 * 109.47074 * 240.00125 * 2 1 3
5 5 H 1.09001 * 109.47515 * 62.80402 * 4 2 1
6 6 C 1.53001 * 109.47505 * 182.80841 * 4 2 1
7 7 N 1.46509 * 109.46811 * 302.80641 * 4 2 1
8 8 C 1.46496 * 120.00377 * 302.76653 * 7 4 2
9 9 S 1.65604 * 119.99697 * 122.77025 * 7 4 2
10 10 O 1.42098 * 106.39920 * 203.53812 * 9 7 4
11 11 O 1.42097 * 106.40340 * 336.45701 * 9 7 4
12 12 C 1.76195 * 107.21882 * 89.99756 * 9 7 4
13 13 C 1.38232 * 120.00314 * 269.72584 * 12 9 7
14 14 C 1.38236 * 120.00203 * 179.76796 * 13 12 9
15 15 C 1.38236 * 119.99802 * 0.48356 * 14 13 12
16 16 C 1.50697 * 120.00176 * 179.77072 * 15 14 13
17 17 C 1.50702 * 109.47266 * 270.02264 * 16 15 14
18 18 H 1.08000 * 119.99851 * 0.02562 * 17 16 15
19 19 C 1.37878 * 120.00201 * 179.97438 * 17 16 15
20 20 N 1.31514 * 119.99599 * 180.02562 * 19 17 16
21 21 Si 1.86799 * 120.00117 * 359.97438 * 19 17 16
22 22 H 1.48506 * 109.46969 * 90.00002 * 21 19 17
23 23 H 1.48499 * 109.47165 * 210.00222 * 21 19 17
24 24 H 1.48502 * 109.47218 * 330.00445 * 21 19 17
25 25 C 1.38235 * 120.00163 * 359.78737 * 15 14 13
26 26 C 1.38235 * 119.99780 * 359.96553 * 25 15 14
27 27 H 1.08994 * 109.47524 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.47000 * 300.00431 * 1 2 3
29 29 H 1.08997 * 109.47060 * 59.99522 * 1 2 3
30 30 H 1.09002 * 109.46897 * 120.00008 * 2 1 3
31 31 H 1.08994 * 109.47107 * 294.37799 * 3 2 1
32 32 H 1.08999 * 109.47281 * 54.38255 * 3 2 1
33 33 H 1.09002 * 109.46911 * 174.38291 * 3 2 1
34 34 H 1.09009 * 109.46912 * 59.99593 * 6 4 2
35 35 H 1.08999 * 109.47457 * 179.97438 * 6 4 2
36 36 H 1.08995 * 109.46942 * 300.00386 * 6 4 2
37 37 H 1.09001 * 109.46773 * 86.79390 * 8 7 4
38 38 H 1.08995 * 109.47426 * 206.80201 * 8 7 4
39 39 H 1.09001 * 109.46865 * 326.79903 * 8 7 4
40 40 H 1.08003 * 119.99922 * 0.02562 * 13 12 9
41 41 H 1.07997 * 120.00661 * 180.25389 * 14 13 12
42 42 H 1.09001 * 109.47223 * 30.02007 * 16 15 14
43 43 H 1.08999 * 109.47721 * 150.02349 * 16 15 14
44 44 H 0.97009 * 119.99501 * 179.97438 * 20 19 17
45 45 H 1.08000 * 119.99747 * 179.97438 * 25 15 14
46 46 H 1.08003 * 119.99863 * 180.02562 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 1 1.7183 -0.1792 -2.1386
6 6 3.5683 -0.7828 -1.2145
7 7 1.4971 -2.0816 -1.2835
8 6 1.7384 -2.9950 -0.1639
9 16 0.6108 -2.5868 -2.5880
10 8 -0.2077 -3.6534 -2.1281
11 8 0.0892 -1.4138 -3.1973
12 6 1.7392 -3.2887 -3.7450
13 6 2.3198 -2.4925 -4.7144
14 6 3.2088 -3.0422 -5.6191
15 6 3.5095 -4.3902 -5.5605
16 6 4.4746 -4.9906 -6.5500
17 6 3.7183 -5.4691 -7.7625
18 1 2.6461 -5.3499 -7.8119
19 6 4.3954 -6.0581 -8.8093
20 7 3.7353 -6.4751 -9.8676
21 14 6.2503 -6.2623 -8.7249
22 1 6.5764 -7.5711 -8.1036
23 1 6.8169 -6.2106 -10.0966
24 1 6.8321 -5.1677 -7.9073
25 6 2.9246 -5.1876 -4.5946
26 6 2.0396 -4.6368 -3.6867
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5139 -0.8899
30 1 1.8933 -0.5138 0.8900
31 1 1.7612 1.9264 -0.9360
32 1 1.5969 1.9846 0.8354
33 1 3.1254 1.4441 0.1006
34 1 3.8900 -1.3249 -0.3252
35 1 3.9316 -1.2970 -2.1043
36 1 3.9722 0.2293 -1.1889
37 1 0.9701 -2.8496 0.5956
38 1 1.7061 -4.0242 -0.5211
39 1 2.7185 -2.7906 0.2670
40 1 2.0821 -1.4401 -4.7624
41 1 3.6656 -2.4195 -6.3740
42 1 5.2030 -4.2373 -6.8501
43 1 4.9914 -5.8322 -6.0887
44 1 4.2118 -6.8892 -10.6042
45 1 3.1593 -6.2408 -4.5492
46 1 1.5829 -5.2597 -2.9318
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000884918265.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:47:35
Heat of formation + Delta-G solvation = -65.027021 kcal
Electronic energy + Delta-G solvation = -26210.445198 eV
Core-core repulsion = 22612.546462 eV
Total energy + Delta-G solvation = -3597.898735 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 325.150 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-38.89019 -38.63267 -37.19338 -35.76780 -34.01733 -33.68241 -31.74536 -30.65734
-30.28252 -27.97181 -27.40772 -26.43791 -23.58048 -23.26465 -22.42189 -20.72168
-20.04079 -19.00981 -18.03520 -17.37886 -16.91947 -16.30177 -15.33744 -15.17998
-14.89767 -14.69725 -14.36051 -14.29431 -14.08848 -13.84242 -13.20404 -13.10033
-13.00830 -12.77705 -12.68240 -12.59734 -12.43199 -12.37116 -12.03127 -11.98498
-11.89614 -11.78785 -11.75994 -11.61871 -11.12543 -11.09861 -10.95995 -10.92476
-10.69590 -10.53309 -10.24743 -10.09569 -9.55972 -9.18430 -8.71333 -8.64059
-8.43967 -6.19394 -4.20958 0.44161 1.26643 1.72882 2.95193 3.19314
3.27824 3.28556 3.76614 4.03944 4.29694 4.29913 4.37029 4.63198
4.69009 4.86523 5.05056 5.07636 5.13541 5.18171 5.19617 5.26904
5.34382 5.42330 5.42864 5.50673 5.57053 5.59925 5.64562 5.68133
5.75040 5.75930 5.81953 5.89248 6.01484 6.07884 6.15575 6.19685
6.23894 6.39973 6.50481 6.69377 6.70266 6.80344 7.28971 7.29470
7.52814 8.33777 8.84341 9.38813 10.93154
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.023276 B = 0.003056 C = 0.002926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1202.671512 B = 9160.567023 C = 9568.462451
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.099 4.099
3 C -0.148 4.148
4 C 0.146 3.854
5 H 0.102 0.898
6 C -0.167 4.167
7 N -0.996 5.996
8 C 0.093 3.907
9 S 2.692 3.308
10 O -0.962 6.962
11 O -0.960 6.960
12 C -0.701 4.701
13 C -0.022 4.022
14 C -0.143 4.143
15 C 0.030 3.970
16 C 0.006 3.994
17 C -0.520 4.520
18 H 0.075 0.925
19 C 0.072 3.928
20 N -0.894 5.894
21 Si 0.879 3.121
22 H -0.275 1.275
23 H -0.285 1.285
24 H -0.265 1.265
25 C -0.143 4.143
26 C -0.023 4.023
27 H 0.053 0.947
28 H 0.055 0.945
29 H 0.061 0.939
30 H 0.074 0.926
31 H 0.059 0.941
32 H 0.056 0.944
33 H 0.058 0.942
34 H 0.061 0.939
35 H 0.063 0.937
36 H 0.069 0.931
37 H 0.057 0.943
38 H 0.073 0.927
39 H 0.072 0.928
40 H 0.130 0.870
41 H 0.129 0.871
42 H 0.034 0.966
43 H 0.029 0.971
44 H 0.266 0.734
45 H 0.129 0.871
46 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.679 12.651 22.371 25.709
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.119 4.119
3 C -0.206 4.206
4 C 0.041 3.959
5 H 0.120 0.880
6 C -0.226 4.226
7 N -0.833 5.833
8 C -0.052 4.052
9 S 2.786 3.214
10 O -0.952 6.952
11 O -0.951 6.951
12 C -0.790 4.790
13 C -0.042 4.042
14 C -0.161 4.161
15 C 0.030 3.970
16 C -0.031 4.031
17 C -0.558 4.558
18 H 0.093 0.907
19 C -0.130 4.130
20 N -0.532 5.532
21 Si 0.706 3.294
22 H -0.200 1.200
23 H -0.211 1.211
24 H -0.189 1.189
25 C -0.162 4.162
26 C -0.043 4.043
27 H 0.072 0.928
28 H 0.074 0.926
29 H 0.081 0.919
30 H 0.093 0.907
31 H 0.078 0.922
32 H 0.076 0.924
33 H 0.077 0.923
34 H 0.080 0.920
35 H 0.082 0.918
36 H 0.088 0.912
37 H 0.076 0.924
38 H 0.092 0.908
39 H 0.090 0.910
40 H 0.148 0.852
41 H 0.147 0.853
42 H 0.052 0.948
43 H 0.047 0.953
44 H 0.076 0.924
45 H 0.147 0.853
46 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -1.575 12.621 22.110 25.507
hybrid contribution 1.623 -0.577 -0.513 1.797
sum 0.048 12.044 21.597 24.728
Atomic orbital electron populations
1.21879 0.94953 1.02001 1.02173 1.21389 0.96341 0.96231 0.97970
1.21878 1.01092 0.95377 1.02261 1.21043 0.93836 0.81107 0.99941
0.88028 1.22241 0.94883 1.02573 1.02915 1.57563 1.72249 1.20201
1.33293 1.21431 1.01960 0.92566 0.89270 1.01852 0.73720 0.73277
0.72599 1.93554 1.64516 1.56407 1.80743 1.93543 1.76739 1.48378
1.76417 1.30478 1.24519 1.04726 1.19265 1.20750 0.92541 0.98775
0.92091 1.21212 0.99734 0.95644 0.99552 1.20688 0.92323 0.92796
0.91198 1.18979 0.94046 0.96301 0.93746 1.20826 0.95893 1.39847
0.99237 0.90668 1.24988 0.98426 0.94617 0.95000 1.69893 1.36161
1.40057 1.07086 0.86789 0.85808 0.79162 0.77650 1.20030 1.21059
1.18938 1.21215 0.98547 1.00381 0.96023 1.20761 0.93797 0.92422
0.97280 0.92788 0.92591 0.91942 0.90723 0.92239 0.92448 0.92275
0.92028 0.91788 0.91190 0.92399 0.90843 0.90964 0.85233 0.85266
0.94824 0.95264 0.92362 0.85268 0.85256
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.33 9.01 37.16 0.33 -1.00 16
2 C -0.10 -0.75 2.27 -90.62 -0.21 -0.96 16
3 C -0.15 -0.94 8.75 37.16 0.33 -0.61 16
4 C 0.15 1.32 2.23 -67.93 -0.15 1.17 16
5 H 0.10 1.01 6.87 -51.93 -0.36 0.65 16
6 C -0.17 -1.28 8.93 37.16 0.33 -0.95 16
7 N -1.00 -10.32 2.19 -114.61 -0.25 -10.57 16
8 C 0.09 0.76 9.30 59.84 0.56 1.32 16
9 S 2.69 38.22 5.64 -107.50 -0.61 37.62 16
10 O -0.96 -15.73 16.29 -57.17 -0.93 -16.67 16
11 O -0.96 -15.39 15.82 -57.17 -0.90 -16.29 16
12 C -0.70 -11.03 5.97 -39.58 -0.24 -11.27 16
13 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16
14 C -0.14 -2.58 9.70 -39.58 -0.38 -2.96 16
15 C 0.03 0.61 5.07 -104.62 -0.53 0.08 16
16 C 0.01 0.14 4.17 -29.04 -0.12 0.02 16
17 C -0.52 -14.33 9.65 -34.44 -0.33 -14.67 16
18 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16
19 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16
20 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16
21 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16
22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16
23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
24 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16
25 C -0.14 -2.59 9.70 -39.58 -0.38 -2.97 16
26 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16
27 H 0.05 0.52 7.23 -51.93 -0.38 0.14 16
28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.07 0.50 7.71 -51.93 -0.40 0.10 16
31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
33 H 0.06 0.32 6.80 -51.93 -0.35 -0.03 16
34 H 0.06 0.42 6.78 -51.92 -0.35 0.06 16
35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
36 H 0.07 0.45 6.63 -51.93 -0.34 0.10 16
37 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16
38 H 0.07 0.61 7.67 -51.93 -0.40 0.21 16
39 H 0.07 0.45 6.58 -51.93 -0.34 0.11 16
40 H 0.13 1.79 7.61 -52.48 -0.40 1.39 16
41 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16
42 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16
43 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16
44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
45 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16
46 H 0.13 1.79 7.62 -52.48 -0.40 1.39 16
LS Contribution 378.55 15.07 5.70 5.70
Total: -1.00 -32.96 378.55 -9.97 -42.93
By element:
Atomic # 1 Polarization: 7.22 SS G_CDS: -7.44 Total: -0.22 kcal
Atomic # 6 Polarization: -30.71 SS G_CDS: -1.65 Total: -32.36 kcal
Atomic # 7 Polarization: -37.17 SS G_CDS: 0.52 Total: -36.65 kcal
Atomic # 8 Polarization: -31.13 SS G_CDS: -1.84 Total: -32.96 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal
Atomic # 16 Polarization: 38.22 SS G_CDS: -0.61 Total: 37.62 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -32.96 -9.97 -42.93 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000884918265.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.098 kcal
(2) G-P(sol) polarization free energy of solvation -32.959 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.057 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.027 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds