Wall clock time and date at job start Tue Mar 31 2020 16:47:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53000 * 109.47279 * 2 1
4 4 C 1.52998 * 109.47074 * 240.00125 * 2 1 3
5 5 H 1.09001 * 109.47515 * 62.80402 * 4 2 1
6 6 C 1.53001 * 109.47505 * 182.80841 * 4 2 1
7 7 N 1.46509 * 109.46811 * 302.80641 * 4 2 1
8 8 C 1.46496 * 120.00377 * 302.76653 * 7 4 2
9 9 S 1.65604 * 119.99697 * 122.77025 * 7 4 2
10 10 O 1.42098 * 106.39920 * 203.53812 * 9 7 4
11 11 O 1.42097 * 106.40340 * 336.45701 * 9 7 4
12 12 C 1.76195 * 107.21882 * 89.99756 * 9 7 4
13 13 C 1.38232 * 120.00314 * 269.72584 * 12 9 7
14 14 C 1.38236 * 120.00203 * 179.76796 * 13 12 9
15 15 C 1.38236 * 119.99802 * 0.48356 * 14 13 12
16 16 C 1.50697 * 120.00176 * 179.77072 * 15 14 13
17 17 C 1.50702 * 109.47266 * 270.02264 * 16 15 14
18 18 H 1.08000 * 119.99851 * 0.02562 * 17 16 15
19 19 C 1.37878 * 120.00201 * 179.97438 * 17 16 15
20 20 N 1.31514 * 119.99599 * 180.02562 * 19 17 16
21 21 Si 1.86799 * 120.00117 * 359.97438 * 19 17 16
22 22 H 1.48506 * 109.46969 * 90.00002 * 21 19 17
23 23 H 1.48499 * 109.47165 * 210.00222 * 21 19 17
24 24 H 1.48502 * 109.47218 * 330.00445 * 21 19 17
25 25 C 1.38235 * 120.00163 * 359.78737 * 15 14 13
26 26 C 1.38235 * 119.99780 * 359.96553 * 25 15 14
27 27 H 1.08994 * 109.47524 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.47000 * 300.00431 * 1 2 3
29 29 H 1.08997 * 109.47060 * 59.99522 * 1 2 3
30 30 H 1.09002 * 109.46897 * 120.00008 * 2 1 3
31 31 H 1.08994 * 109.47107 * 294.37799 * 3 2 1
32 32 H 1.08999 * 109.47281 * 54.38255 * 3 2 1
33 33 H 1.09002 * 109.46911 * 174.38291 * 3 2 1
34 34 H 1.09009 * 109.46912 * 59.99593 * 6 4 2
35 35 H 1.08999 * 109.47457 * 179.97438 * 6 4 2
36 36 H 1.08995 * 109.46942 * 300.00386 * 6 4 2
37 37 H 1.09001 * 109.46773 * 86.79390 * 8 7 4
38 38 H 1.08995 * 109.47426 * 206.80201 * 8 7 4
39 39 H 1.09001 * 109.46865 * 326.79903 * 8 7 4
40 40 H 1.08003 * 119.99922 * 0.02562 * 13 12 9
41 41 H 1.07997 * 120.00661 * 180.25389 * 14 13 12
42 42 H 1.09001 * 109.47223 * 30.02007 * 16 15 14
43 43 H 1.08999 * 109.47721 * 150.02349 * 16 15 14
44 44 H 0.97009 * 119.99501 * 179.97438 * 20 19 17
45 45 H 1.08000 * 119.99747 * 179.97438 * 25 15 14
46 46 H 1.08003 * 119.99863 * 180.02562 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 1 1.7183 -0.1792 -2.1386
6 6 3.5683 -0.7828 -1.2145
7 7 1.4971 -2.0816 -1.2835
8 6 1.7384 -2.9950 -0.1639
9 16 0.6108 -2.5868 -2.5880
10 8 -0.2077 -3.6534 -2.1281
11 8 0.0892 -1.4138 -3.1973
12 6 1.7392 -3.2887 -3.7450
13 6 2.3198 -2.4925 -4.7144
14 6 3.2088 -3.0422 -5.6191
15 6 3.5095 -4.3902 -5.5605
16 6 4.4746 -4.9906 -6.5500
17 6 3.7183 -5.4691 -7.7625
18 1 2.6461 -5.3499 -7.8119
19 6 4.3954 -6.0581 -8.8093
20 7 3.7353 -6.4751 -9.8676
21 14 6.2503 -6.2623 -8.7249
22 1 6.5764 -7.5711 -8.1036
23 1 6.8169 -6.2106 -10.0966
24 1 6.8321 -5.1677 -7.9073
25 6 2.9246 -5.1876 -4.5946
26 6 2.0396 -4.6368 -3.6867
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5139 -0.8899
30 1 1.8933 -0.5138 0.8900
31 1 1.7612 1.9264 -0.9360
32 1 1.5969 1.9846 0.8354
33 1 3.1254 1.4441 0.1006
34 1 3.8900 -1.3249 -0.3252
35 1 3.9316 -1.2970 -2.1043
36 1 3.9722 0.2293 -1.1889
37 1 0.9701 -2.8496 0.5956
38 1 1.7061 -4.0242 -0.5211
39 1 2.7185 -2.7906 0.2670
40 1 2.0821 -1.4401 -4.7624
41 1 3.6656 -2.4195 -6.3740
42 1 5.2030 -4.2373 -6.8501
43 1 4.9914 -5.8322 -6.0887
44 1 4.2118 -6.8892 -10.6042
45 1 3.1593 -6.2408 -4.5492
46 1 1.5829 -5.2597 -2.9318
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000884918265.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:47:34
Heat of formation + Delta-G solvation = -85.040760 kcal
Electronic energy + Delta-G solvation = -26211.313059 eV
Core-core repulsion = 22612.546462 eV
Total energy + Delta-G solvation = -3598.766596 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 325.150 amu
Computer time = 2.57 seconds
Orbital eigenvalues (eV)
-40.27536 -39.33986 -38.39989 -36.99496 -35.55906 -34.70294 -33.56320 -32.00011
-30.93375 -29.71924 -27.99686 -27.11832 -25.29825 -24.01424 -23.77431 -22.29411
-20.79700 -19.98610 -19.11832 -19.04092 -18.51556 -17.28216 -16.78308 -16.40154
-16.01704 -15.80150 -15.62770 -15.32563 -15.15187 -14.74370 -14.62174 -14.50025
-14.21717 -13.83463 -13.66507 -13.62940 -13.52317 -13.45112 -13.22353 -13.06112
-13.01466 -12.88441 -12.61980 -12.56245 -12.46953 -12.29724 -12.09369 -11.94589
-11.75900 -11.73868 -11.68055 -11.52750 -11.33083 -10.83872 -10.05695 -9.99209
-9.86940 -8.34796 -6.42345 -0.68863 -0.10083 0.36497 1.35483 1.37369
1.48858 1.92886 2.31745 2.53675 2.74751 2.99622 3.21176 3.65439
3.82031 3.93744 3.98591 4.04290 4.05911 4.22114 4.38992 4.43604
4.47932 4.54858 4.70521 4.75622 4.75764 4.78837 4.82972 4.86259
4.90599 4.98282 5.01824 5.04673 5.07474 5.12562 5.14819 5.20438
5.26263 5.29860 5.37311 5.47945 5.51197 5.58415 5.72560 5.75276
5.91382 6.17717 6.64273 7.21678 8.81766
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.023276 B = 0.003056 C = 0.002926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1202.671512 B = 9160.567023 C = 9568.462451
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.094 4.094
3 C -0.147 4.147
4 C 0.139 3.861
5 H 0.089 0.911
6 C -0.165 4.165
7 N -0.985 5.985
8 C 0.081 3.919
9 S 2.708 3.292
10 O -0.983 6.983
11 O -0.981 6.981
12 C -0.700 4.700
13 C -0.022 4.022
14 C -0.152 4.152
15 C -0.002 4.002
16 C 0.013 3.987
17 C -0.528 4.528
18 H 0.025 0.975
19 C 0.009 3.991
20 N -0.948 5.948
21 Si 0.954 3.046
22 H -0.263 1.263
23 H -0.284 1.284
24 H -0.241 1.241
25 C -0.153 4.153
26 C -0.023 4.023
27 H 0.042 0.958
28 H 0.070 0.930
29 H 0.046 0.954
30 H 0.091 0.909
31 H 0.052 0.948
32 H 0.065 0.935
33 H 0.071 0.929
34 H 0.075 0.925
35 H 0.050 0.950
36 H 0.085 0.915
37 H 0.069 0.931
38 H 0.072 0.928
39 H 0.098 0.902
40 H 0.152 0.848
41 H 0.135 0.865
42 H 0.041 0.959
43 H 0.040 0.960
44 H 0.269 0.731
45 H 0.135 0.865
46 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.112 13.752 25.271 28.792
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.114 4.114
3 C -0.205 4.205
4 C 0.034 3.966
5 H 0.107 0.893
6 C -0.223 4.223
7 N -0.825 5.825
8 C -0.063 4.063
9 S 2.800 3.200
10 O -0.974 6.974
11 O -0.971 6.971
12 C -0.787 4.787
13 C -0.041 4.041
14 C -0.171 4.171
15 C -0.002 4.002
16 C -0.025 4.025
17 C -0.565 4.565
18 H 0.044 0.956
19 C -0.189 4.189
20 N -0.587 5.587
21 Si 0.777 3.223
22 H -0.188 1.188
23 H -0.210 1.210
24 H -0.164 1.164
25 C -0.172 4.172
26 C -0.043 4.043
27 H 0.061 0.939
28 H 0.089 0.911
29 H 0.065 0.935
30 H 0.109 0.891
31 H 0.071 0.929
32 H 0.084 0.916
33 H 0.090 0.910
34 H 0.094 0.906
35 H 0.069 0.931
36 H 0.103 0.897
37 H 0.087 0.913
38 H 0.090 0.910
39 H 0.116 0.884
40 H 0.169 0.831
41 H 0.153 0.847
42 H 0.060 0.940
43 H 0.059 0.941
44 H 0.078 0.922
45 H 0.153 0.847
46 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges 0.219 13.722 25.013 28.531
hybrid contribution 0.905 -0.841 -1.308 1.799
sum 1.124 12.881 23.705 27.002
Atomic orbital electron populations
1.21926 0.96067 1.01263 1.02181 1.21389 0.95349 0.97044 0.97666
1.21880 1.01939 0.94372 1.02297 1.21266 0.94893 0.80109 1.00347
0.89286 1.22233 0.93497 1.03640 1.02943 1.57315 1.71938 1.21056
1.32170 1.21729 1.03880 0.92057 0.88612 1.01321 0.73547 0.72431
0.72721 1.93521 1.65473 1.57351 1.81009 1.93514 1.77392 1.48807
1.77368 1.30904 1.23671 1.04731 1.19367 1.20993 0.91750 0.99951
0.91429 1.21348 1.00360 0.95210 1.00207 1.20588 0.93598 0.93932
0.92117 1.18821 0.94354 0.96823 0.92454 1.21069 0.94119 1.39772
1.01569 0.95633 1.26022 1.04440 0.94101 0.94298 1.70063 1.38704
1.41682 1.08298 0.85601 0.78479 0.80218 0.78036 1.18818 1.20951
1.16416 1.21360 0.98957 1.00675 0.96158 1.21024 0.93108 0.92924
0.97200 0.93887 0.91103 0.93488 0.89098 0.92928 0.91614 0.91004
0.90597 0.93127 0.89662 0.91286 0.90961 0.88366 0.83067 0.84743
0.94033 0.94147 0.92188 0.84671 0.82917
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.48 9.01 71.98 0.65 -1.84 16
2 C -0.09 -1.18 2.27 -10.80 -0.02 -1.20 16
3 C -0.15 -1.46 8.75 71.98 0.63 -0.83 16
4 C 0.14 2.20 2.23 44.99 0.10 2.30 16
5 H 0.09 1.65 6.87 -2.39 -0.02 1.63 16
6 C -0.16 -2.04 8.93 71.98 0.64 -1.40 16
7 N -0.99 -18.44 2.19 -516.51 -1.13 -19.57 16
8 C 0.08 1.11 9.30 127.77 1.19 2.30 16
9 S 2.71 74.05 5.64 -56.49 -0.32 73.73 16
10 O -0.98 -31.18 16.29 -128.00 -2.09 -33.26 16
11 O -0.98 -30.86 15.82 -128.00 -2.02 -32.88 16
12 C -0.70 -21.40 5.97 22.27 0.13 -21.27 16
13 C -0.02 -0.70 9.52 22.27 0.21 -0.49 16
14 C -0.15 -5.52 9.70 22.27 0.22 -5.30 16
15 C 0.00 -0.08 5.07 -19.87 -0.10 -0.18 16
16 C 0.01 0.57 4.17 29.10 0.12 0.69 16
17 C -0.53 -30.02 9.65 25.60 0.25 -29.77 16
18 H 0.03 1.65 7.98 -2.91 -0.02 1.62 16
19 C 0.01 0.51 5.47 84.65 0.46 0.97 16
20 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16
21 Si 0.95 42.35 27.47 68.60 1.88 44.23 16
22 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16
23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
24 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16
25 C -0.15 -5.51 9.70 22.27 0.22 -5.30 16
26 C -0.02 -0.74 9.52 22.27 0.21 -0.53 16
27 H 0.04 0.76 7.23 -2.39 -0.02 0.74 16
28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
29 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16
30 H 0.09 0.87 7.71 -2.39 -0.02 0.86 16
31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16
32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16
33 H 0.07 0.54 6.80 -2.39 -0.02 0.52 16
34 H 0.08 0.73 6.78 -2.38 -0.02 0.71 16
35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16
36 H 0.08 0.81 6.63 -2.39 -0.02 0.80 16
37 H 0.07 0.82 7.90 -2.39 -0.02 0.80 16
38 H 0.07 1.03 7.67 -2.39 -0.02 1.01 16
39 H 0.10 0.84 6.58 -2.39 -0.02 0.83 16
40 H 0.15 4.02 7.61 -2.91 -0.02 4.00 16
41 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16
42 H 0.04 1.80 7.14 -2.39 -0.02 1.78 16
43 H 0.04 1.72 7.51 -2.39 -0.02 1.70 16
44 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16
45 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16
46 H 0.15 3.99 7.62 -2.91 -0.02 3.97 16
Total: -1.00 -73.43 378.55 2.42 -71.01
By element:
Atomic # 1 Polarization: 16.27 SS G_CDS: 0.89 Total: 17.16 kcal
Atomic # 6 Polarization: -66.74 SS G_CDS: 4.91 Total: -61.83 kcal
Atomic # 7 Polarization: -77.32 SS G_CDS: -0.83 Total: -78.15 kcal
Atomic # 8 Polarization: -62.04 SS G_CDS: -4.11 Total: -66.15 kcal
Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.23 kcal
Atomic # 16 Polarization: 74.05 SS G_CDS: -0.32 Total: 73.73 kcal
Total: -73.43 2.42 -71.01 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000884918265.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.034 kcal
(2) G-P(sol) polarization free energy of solvation -73.431 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.465 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.007 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.041 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.57 seconds